RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 IPO8O15397 1037 aaKnown RBP17.76■□□□□ 0.43
SFSWAP-210ENST00000541286 IFNL2Q8IZJ0 200 aa17.76■□□□□ 0.43
SFSWAP-210ENST00000541286 GRPEL1Q9HAV7 217 aa17.75■□□□□ 0.43
SFSWAP-210ENST00000541286 SMIM5Q71RC9 77 aa17.75■□□□□ 0.43
SFSWAP-210ENST00000541286 BTBD11A6QL63 1104 aa17.74■□□□□ 0.43
SFSWAP-210ENST00000541286 PRIM1P49642 420 aaKnown RBP17.74■□□□□ 0.43
SFSWAP-210ENST00000541286 GJD4Q96KN9 370 aaPredicted RBP17.74■□□□□ 0.43
SFSWAP-210ENST00000541286 OVOS2A0A0G2JMS6 1433 aa17.74■□□□□ 0.43
SFSWAP-210ENST00000541286 AMOTQ4VCS5 1084 aa17.74■□□□□ 0.43
SFSWAP-210ENST00000541286 CFAP44Q96MT7 982 aa17.74■□□□□ 0.43
SFSWAP-210ENST00000541286 AAMPQ13685 434 aa17.74■□□□□ 0.43
SFSWAP-210ENST00000541286 POTEAQ6S8J7 498 aa17.74■□□□□ 0.43
SFSWAP-210ENST00000541286 ASAP1Q9ULH1 1129 aa17.74■□□□□ 0.43
SFSWAP-210ENST00000541286 GAS2L3Q86XJ1 694 aa17.73■□□□□ 0.43
SFSWAP-210ENST00000541286 NCAPD2Q15021 1401 aa17.73■□□□□ 0.43
SFSWAP-210ENST00000541286 HSP90AB1P08238 724 aaKnown RBP17.72■□□□□ 0.43
SFSWAP-210ENST00000541286 ZNF853P0CG23 659 aa17.72■□□□□ 0.43
SFSWAP-210ENST00000541286 FAM13BQ9NYF5 915 aa17.72■□□□□ 0.43
SFSWAP-210ENST00000541286 FSD2A1L4K1 749 aa17.72■□□□□ 0.43
SFSWAP-210ENST00000541286 CHL1O00533 1208 aa17.72■□□□□ 0.43
SFSWAP-210ENST00000541286 VPS72Q15906 364 aa17.72■□□□□ 0.43
SFSWAP-210ENST00000541286 CABP4P57796 275 aa17.72■□□□□ 0.43
SFSWAP-210ENST00000541286 SEPT12Q8IYM1 358 aa17.71■□□□□ 0.43
SFSWAP-210ENST00000541286 NRAPQ86VF7 1730 aa17.71■□□□□ 0.43
SFSWAP-210ENST00000541286 TAF7Q15545 349 aaPredicted RBP17.71■□□□□ 0.43
SFSWAP-210ENST00000541286 KIAA1211Q6ZU35 1233 aa17.71■□□□□ 0.43
SFSWAP-210ENST00000541286 TWISTNBQ3B726 338 aaPredicted RBP17.7■□□□□ 0.42
SFSWAP-210ENST00000541286 GNAI1P63096 354 aa17.7■□□□□ 0.42
SFSWAP-210ENST00000541286 PIGBQ92521 554 aa17.7■□□□□ 0.42
SFSWAP-210ENST00000541286 ZNF496Q96IT1 587 aaPredicted RBP17.7■□□□□ 0.42
SFSWAP-210ENST00000541286 ZBTB40Q9NUA8 1239 aa17.7■□□□□ 0.42
SFSWAP-210ENST00000541286 IFT57Q9NWB7 429 aa17.7■□□□□ 0.42
SFSWAP-210ENST00000541286 KIF16BQ96L93 1317 aa17.69■□□□□ 0.42
SFSWAP-210ENST00000541286 PCDH11XQ9BZA7 1347 aa17.69■□□□□ 0.42
SFSWAP-210ENST00000541286 PCDH11YQ9BZA8 1340 aa17.69■□□□□ 0.42
SFSWAP-210ENST00000541286 MRE11P49959 708 aa17.69■□□□□ 0.42
SFSWAP-210ENST00000541286 LMOD3Q0VAK6 560 aa17.69■□□□□ 0.42
SFSWAP-210ENST00000541286 SLC52A2Q9HAB3 445 aa17.69■□□□□ 0.42
SFSWAP-210ENST00000541286 CHMP5Q9NZZ3 219 aa17.69■□□□□ 0.42
SFSWAP-210ENST00000541286 VAMP4O75379 141 aa17.68■□□□□ 0.42
SFSWAP-210ENST00000541286 HDAC1Q13547 482 aaPredicted RBP17.68■□□□□ 0.42
SFSWAP-210ENST00000541286 G2E3Q7L622 706 aa17.68■□□□□ 0.42
SFSWAP-210ENST00000541286 CHD1LQ86WJ1 897 aa17.68■□□□□ 0.42
SFSWAP-210ENST00000541286 ZNF330Q9Y3S2 320 aaPredicted RBP17.68■□□□□ 0.42
SFSWAP-210ENST00000541286 CEMIPQ8WUJ3 1361 aa17.67■□□□□ 0.42
SFSWAP-210ENST00000541286 DISP2A7MBM2 1401 aa17.67■□□□□ 0.42
SFSWAP-210ENST00000541286 PROSER3Q2NL68 480 aa17.67■□□□□ 0.42
SFSWAP-210ENST00000541286 RBM42Q9BTD8 480 aaKnown RBP17.67■□□□□ 0.42
SFSWAP-210ENST00000541286 CT47B1P0C2W7 299 aaPredicted RBP17.66■□□□□ 0.42
SFSWAP-210ENST00000541286 DCAF5Q96JK2 942 aa17.66■□□□□ 0.42
SFSWAP-210ENST00000541286 TRPC5Q9UL62 973 aaPredicted RBP17.66■□□□□ 0.42
SFSWAP-210ENST00000541286 SMC5Q8IY18 1101 aa17.66■□□□□ 0.42
SFSWAP-210ENST00000541286 PRDM10Q9NQV6 1147 aa17.66■□□□□ 0.42
SFSWAP-210ENST00000541286 USP16Q9Y5T5 823 aa17.66■□□□□ 0.42
SFSWAP-210ENST00000541286 GLI3P10071 1580 aa17.66■□□□□ 0.42
SFSWAP-210ENST00000541286 VIRMAQ69YN4 1812 aaKnown RBP17.65■□□□□ 0.42
SFSWAP-210ENST00000541286 SHANK3Q9BYB0 1731 aa17.65■□□□□ 0.42
SFSWAP-210ENST00000541286 ZNF790Q6PG37 636 aa17.65■□□□□ 0.42
SFSWAP-210ENST00000541286 EIF4A1P60842 406 aaKnown RBP17.64■□□□□ 0.42
SFSWAP-210ENST00000541286 F6X3S4 739 aa17.64■□□□□ 0.41
SFSWAP-210ENST00000541286 PHAXQ9H814 394 aaKnown RBP17.64■□□□□ 0.41
SFSWAP-210ENST00000541286 MYL6BP14649 208 aa17.64■□□□□ 0.41
SFSWAP-210ENST00000541286 NUCB1Q02818 461 aa17.64■□□□□ 0.41
SFSWAP-210ENST00000541286 TMOD3Q9NYL9 352 aa17.64■□□□□ 0.41
SFSWAP-210ENST00000541286 NCLP19338 710 aaKnown RBP17.63■□□□□ 0.41
SFSWAP-210ENST00000541286 SLC4A9Q96Q91 983 aa17.62■□□□□ 0.41
SFSWAP-210ENST00000541286 R3HCC1Q9Y3T6 440 aaKnown RBP17.62■□□□□ 0.41
SFSWAP-210ENST00000541286 AIMP1Q12904 312 aaKnown RBP17.62■□□□□ 0.41
SFSWAP-210ENST00000541286 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.62■□□□□ 0.418e-7■■■□□ 16.8
SFSWAP-210ENST00000541286 SLC4A2P04920 1241 aa17.62■□□□□ 0.41
SFSWAP-210ENST00000541286 CHPF2Q9P2E5 772 aa17.61■□□□□ 0.41
SFSWAP-210ENST00000541286 TOGARAM1Q9Y4F4 1720 aa17.61■□□□□ 0.41
SFSWAP-210ENST00000541286 TRIM37O94972 964 aa17.6■□□□□ 0.41
SFSWAP-210ENST00000541286 BARGINQ6ZT62 677 aa17.6■□□□□ 0.41
SFSWAP-210ENST00000541286 ATG3Q9NT62 314 aa17.6■□□□□ 0.41
SFSWAP-210ENST00000541286 A1BGP04217 495 aa17.6■□□□□ 0.41
SFSWAP-210ENST00000541286 TTC5Q8N0Z6 440 aa17.6■□□□□ 0.41
SFSWAP-210ENST00000541286 IL16Q14005 1332 aa17.59■□□□□ 0.41
SFSWAP-210ENST00000541286 HDGFL1Q5TGJ6 251 aa17.59■□□□□ 0.41
SFSWAP-210ENST00000541286 ZBTB7BO15156 539 aaPredicted RBP17.59■□□□□ 0.41
SFSWAP-210ENST00000541286 CD2BP2O95400 341 aaKnown RBP17.59■□□□□ 0.41
SFSWAP-210ENST00000541286 ZHX1Q9UKY1 873 aaPredicted RBP17.59■□□□□ 0.41
SFSWAP-210ENST00000541286 ABCC6O95255 1503 aa17.59■□□□□ 0.41
SFSWAP-210ENST00000541286 PKD1L3Q7Z443 1732 aa17.59■□□□□ 0.41
SFSWAP-210ENST00000541286 TNPO1Q92973 898 aaKnown RBP17.59■□□□□ 0.41
SFSWAP-210ENST00000541286 PARP4Q9UKK3 1724 aaKnown RBP17.58■□□□□ 0.41
SFSWAP-210ENST00000541286 NWD2Q9ULI1 1742 aa17.58■□□□□ 0.41
SFSWAP-210ENST00000541286 LRRC37A3O60309 1634 aa17.58■□□□□ 0.41
SFSWAP-210ENST00000541286 HTATSF1O43719 755 aaKnown RBP17.58■□□□□ 0.41
SFSWAP-210ENST00000541286 GIGYF1O75420 1035 aaPredicted RBP17.58■□□□□ 0.41
SFSWAP-210ENST00000541286 CALD1Q05682 793 aaKnown RBP17.58■□□□□ 0.41
SFSWAP-210ENST00000541286 TBC1D9Q6ZT07 1266 aa17.58■□□□□ 0.41
SFSWAP-210ENST00000541286 ATRNO75882 1429 aa17.58■□□□□ 0.4
SFSWAP-210ENST00000541286 TNS2Q63HR2 1409 aa17.58■□□□□ 0.4
SFSWAP-210ENST00000541286 C16orf71Q8IYS4 520 aaPredicted RBP17.58■□□□□ 0.4
SFSWAP-210ENST00000541286 MPNDQ8N594 471 aa17.58■□□□□ 0.4
SFSWAP-210ENST00000541286 THRAP3Q9Y2W1 955 aaKnown RBP17.58■□□□□ 0.4
SFSWAP-210ENST00000541286 ALDH1L2Q3SY69 923 aa17.57■□□□□ 0.4
SFSWAP-210ENST00000541286 DNAJC10Q8IXB1 793 aa17.57■□□□□ 0.4
SFSWAP-210ENST00000541286 MRPL50Q8N5N7 158 aaKnown RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms