RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 ITGB4P16144 1822 aa15.43■□□□□ 0.06
AP003559.1-201ENST00000540906 ERVV-2B6SEH9 535 aa15.43■□□□□ 0.06
AP003559.1-201ENST00000540906 TTC5Q8N0Z6 440 aa15.43■□□□□ 0.06
AP003559.1-201ENST00000540906 LRP10Q7Z4F1 713 aa15.43■□□□□ 0.06
AP003559.1-201ENST00000540906 SPATA31A1Q5TZJ5 1347 aa15.42■□□□□ 0.06
AP003559.1-201ENST00000540906 TNS2Q63HR2 1409 aa15.42■□□□□ 0.06
AP003559.1-201ENST00000540906 NWD2Q9ULI1 1742 aa15.42■□□□□ 0.06
AP003559.1-201ENST00000540906 NUCB1Q02818 461 aa15.42■□□□□ 0.06
AP003559.1-201ENST00000540906 BEND3Q5T5X7 828 aa15.42■□□□□ 0.06
AP003559.1-201ENST00000540906 DNAAF4Q8WXU2 420 aa15.42■□□□□ 0.06
AP003559.1-201ENST00000540906 FMNL2Q96PY5 1086 aa15.42■□□□□ 0.06
AP003559.1-201ENST00000540906 LNPKQ9C0E8 428 aa15.42■□□□□ 0.06
AP003559.1-201ENST00000540906 USP44Q9H0E7 712 aa15.42■□□□□ 0.06
AP003559.1-201ENST00000540906 DDX21Q9NR30 783 aaKnown RBP eCLIP15.42■□□□□ 0.06
AP003559.1-201ENST00000540906 MYL6BP14649 208 aa15.41■□□□□ 0.06
AP003559.1-201ENST00000540906 MEX3CQ5U5Q3 659 aaKnown RBP15.41■□□□□ 0.06
AP003559.1-201ENST00000540906 LRP6O75581 1613 aa15.41■□□□□ 0.06
AP003559.1-201ENST00000540906 SNRPA1P09661 255 aaKnown RBP15.4■□□□□ 0.06
AP003559.1-201ENST00000540906 AIMP1Q12904 312 aaKnown RBP15.4■□□□□ 0.06
AP003559.1-201ENST00000540906 C8orf37Q96NL8 207 aa15.4■□□□□ 0.06
AP003559.1-201ENST00000540906 PIGBQ92521 554 aa15.4■□□□□ 0.06
AP003559.1-201ENST00000540906 MAP3K2Q9Y2U5 619 aa15.4■□□□□ 0.06
AP003559.1-201ENST00000540906 FAM161AQ3B820 660 aa15.39■□□□□ 0.05
AP003559.1-201ENST00000540906 ANKRD45Q5TZF3 282 aa15.39■□□□□ 0.05
AP003559.1-201ENST00000540906 CHD1LQ86WJ1 897 aa15.39■□□□□ 0.05
AP003559.1-201ENST00000540906 SRCIN1Q9C0H9 1055 aa15.39■□□□□ 0.05
AP003559.1-201ENST00000540906 HYPKQ9NX55 129 aa15.39■□□□□ 0.05
AP003559.1-201ENST00000540906 SPATA31A5Q5VU36 1347 aa15.39■□□□□ 0.05
AP003559.1-201ENST00000540906 SPATA31A7Q8IWB4 1347 aa15.39■□□□□ 0.05
AP003559.1-201ENST00000540906 NBPF26B4DH59 902 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 PTCD1O75127 700 aaKnown RBP15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 NBPF14Q5TI25 921 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 NBPF10Q6P3W6 841 aaKnown RBP15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 RPAP2Q8IXW5 612 aaPredicted RBP15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 NBPF15Q8N660 670 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 XAGE3Q8WTP9 111 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 GCC1Q96CN9 775 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 DCTPP1Q9H773 170 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 ASAP1Q9ULH1 1129 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 LRRFIP2Q9Y608 721 aaKnown RBP15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 DOT1LQ8TEK3 1739 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 PNMA6EA0A0J9YXQ4 647 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 GNAI2P04899 355 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 KSR2Q6VAB6 950 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 BCL9LQ86UU0 1499 aa15.38■□□□□ 0.05
AP003559.1-201ENST00000540906 SPATA31A6Q5VVP1 1343 aa15.37■□□□□ 0.05
AP003559.1-201ENST00000540906 EXOC5O00471 708 aa15.37■□□□□ 0.05
AP003559.1-201ENST00000540906 NBPF7P0C2Y1 421 aaPredicted RBP15.37■□□□□ 0.05
AP003559.1-201ENST00000540906 CWF19L2Q2TBE0 894 aaKnown RBP15.37■□□□□ 0.05
AP003559.1-201ENST00000540906 COPS6Q7L5N1 327 aa15.37■□□□□ 0.05
AP003559.1-201ENST00000540906 TMOD3Q9NYL9 352 aa15.37■□□□□ 0.05
AP003559.1-201ENST00000540906 NGLY1Q96IV0 654 aa15.36■□□□□ 0.05
AP003559.1-201ENST00000540906 CHMP4AQ9BY43 222 aa15.36■□□□□ 0.05
AP003559.1-201ENST00000540906 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.36■□□□□ 0.05
AP003559.1-201ENST00000540906 SMARCA5O60264 1052 aaPredicted RBP15.36■□□□□ 0.05
AP003559.1-201ENST00000540906 SEC24BO95487 1268 aa15.36■□□□□ 0.05
AP003559.1-201ENST00000540906 GNAI3P08754 354 aa15.36■□□□□ 0.05
AP003559.1-201ENST00000540906 ATG3Q9NT62 314 aa15.36■□□□□ 0.05
AP003559.1-201ENST00000540906 A1BGP04217 495 aa15.35■□□□□ 0.05
AP003559.1-201ENST00000540906 IGKV5-2P06315 115 aa15.35■□□□□ 0.05
AP003559.1-201ENST00000540906 C16orf71Q8IYS4 520 aaPredicted RBP15.35■□□□□ 0.05
AP003559.1-201ENST00000540906 MARCH10Q8NA82 808 aaPredicted RBP15.35■□□□□ 0.05
AP003559.1-201ENST00000540906 CCDC9Q9Y3X0 531 aaKnown RBP15.35■□□□□ 0.05
AP003559.1-201ENST00000540906 ARFGEF2Q9Y6D5 1785 aa15.35■□□□□ 0.05
AP003559.1-201ENST00000540906 BCL9O00512 1426 aa15.35■□□□□ 0.05
AP003559.1-201ENST00000540906 APBB1O00213 710 aa15.34■□□□□ 0.05
AP003559.1-201ENST00000540906 UBTFL1P0CB47 393 aaPredicted RBP15.34■□□□□ 0.05
AP003559.1-201ENST00000540906 ATP8B2P98198 1209 aa15.34■□□□□ 0.05
AP003559.1-201ENST00000540906 OTUD7AQ8TE49 926 aaPredicted RBP15.34■□□□□ 0.05
AP003559.1-201ENST00000540906 SLC4A9Q96Q91 983 aa15.34■□□□□ 0.05
AP003559.1-201ENST00000540906 NPM2Q86SE8 214 aaKnown RBP15.33■□□□□ 0.05
AP003559.1-201ENST00000540906 UNC5CLQ8IV45 518 aa15.33■□□□□ 0.05
AP003559.1-201ENST00000540906 THRAP3Q9Y2W1 955 aaKnown RBP15.33■□□□□ 0.05
AP003559.1-201ENST00000540906 KAT6BQ8WYB5 2073 aa15.33■□□□□ 0.04
AP003559.1-201ENST00000540906 MSH5O43196 834 aa15.33■□□□□ 0.04
AP003559.1-201ENST00000540906 BCL11AQ9H165 835 aa15.33■□□□□ 0.04
AP003559.1-201ENST00000540906 PRIM1P49642 420 aaKnown RBP15.32■□□□□ 0.04
AP003559.1-201ENST00000540906 DDB1Q16531 1140 aa15.32■□□□□ 0.04
AP003559.1-201ENST00000540906 NUP188Q5SRE5 1749 aa15.32■□□□□ 0.04
AP003559.1-201ENST00000540906 DNAJC10Q8IXB1 793 aa15.32■□□□□ 0.04
AP003559.1-201ENST00000540906 EXOC6BQ9Y2D4 811 aa15.32■□□□□ 0.04
AP003559.1-201ENST00000540906 ALDH1L1O75891 902 aa15.31■□□□□ 0.04
AP003559.1-201ENST00000540906 BARGINQ6ZT62 677 aa15.31■□□□□ 0.04
AP003559.1-201ENST00000540906 TTLL7Q6ZT98 887 aa15.31■□□□□ 0.04
AP003559.1-201ENST00000540906 RIC3Q7Z5B4 369 aa15.31■□□□□ 0.04
AP003559.1-201ENST00000540906 ACSBG1Q96GR2 724 aa15.31■□□□□ 0.04
AP003559.1-201ENST00000540906 FAM98CQ17RN3 349 aaKnown RBP15.31■□□□□ 0.04
AP003559.1-201ENST00000540906 LINS1Q8NG48 757 aa15.31■□□□□ 0.04
AP003559.1-201ENST00000540906 SYTL4Q96C24 671 aaPredicted RBP15.31■□□□□ 0.04
AP003559.1-201ENST00000540906 KAZALD1Q96I82 304 aa15.31■□□□□ 0.04
AP003559.1-201ENST00000540906 MYD88Q99836 296 aa15.31■□□□□ 0.04
AP003559.1-201ENST00000540906 AFDNP55196 1824 aaKnown RBP15.3■□□□□ 0.04
AP003559.1-201ENST00000540906 TJP1Q07157 1748 aa15.3■□□□□ 0.04
AP003559.1-201ENST00000540906 DDX58O95786 925 aaKnown RBP15.3■□□□□ 0.04
AP003559.1-201ENST00000540906 ANKRD13DQ6ZTN6 518 aa15.3■□□□□ 0.04
AP003559.1-201ENST00000540906 PPP1R42Q7Z4L9 355 aa15.3■□□□□ 0.04
AP003559.1-201ENST00000540906 JARID2Q92833 1246 aaPredicted RBP15.3■□□□□ 0.04
AP003559.1-201ENST00000540906 RBM42Q9BTD8 480 aaKnown RBP15.3■□□□□ 0.04
AP003559.1-201ENST00000540906 METTL22Q9BUU2 404 aaPredicted RBP15.3■□□□□ 0.04
AP003559.1-201ENST00000540906 CDCA7Q9BWT1 371 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms