RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 C4AP0C0L4 1744 aa13.67□□□□□ -0.22
VPS33A-204ENST00000540669 SCN7AQ01118 1682 aa13.67□□□□□ -0.22
VPS33A-204ENST00000540669 VAMP4O75379 141 aa13.67□□□□□ -0.22
VPS33A-204ENST00000540669 LRP10Q7Z4F1 713 aa13.67□□□□□ -0.22
VPS33A-204ENST00000540669 SMARCC1Q92922 1105 aaPredicted RBP13.67□□□□□ -0.22
VPS33A-204ENST00000540669 FMNL2Q96PY5 1086 aa13.67□□□□□ -0.22
VPS33A-204ENST00000540669 TWISTNBQ3B726 338 aaPredicted RBP13.66□□□□□ -0.22
VPS33A-204ENST00000540669 ERBB4Q15303 1308 aa13.65□□□□□ -0.22
VPS33A-204ENST00000540669 ARFGEF2Q9Y6D5 1785 aa13.64□□□□□ -0.23
VPS33A-204ENST00000540669 LOC102724428A0A0B4J2F2 783 aa13.64□□□□□ -0.23
VPS33A-204ENST00000540669 PRAMEF22A3QJZ6 481 aa13.64□□□□□ -0.23
VPS33A-204ENST00000540669 PLSCR1O15162 318 aa13.64□□□□□ -0.23
VPS33A-204ENST00000540669 TRIM37O94972 964 aa13.64□□□□□ -0.23
VPS33A-204ENST00000540669 SNRPA1P09661 255 aaKnown RBP13.64□□□□□ -0.23
VPS33A-204ENST00000540669 RARSP54136 660 aaKnown RBP13.64□□□□□ -0.23
VPS33A-204ENST00000540669 SIK1P57059 783 aa13.64□□□□□ -0.23
VPS33A-204ENST00000540669 ITPK1Q13572 414 aa13.64□□□□□ -0.23
VPS33A-204ENST00000540669 ALDH1L2Q3SY69 923 aa13.64□□□□□ -0.23
VPS33A-204ENST00000540669 TTC5Q8N0Z6 440 aa13.64□□□□□ -0.23
VPS33A-204ENST00000540669 LAS1LQ9Y4W2 734 aaKnown RBP13.64□□□□□ -0.23
VPS33A-204ENST00000540669 PDIA6Q15084 440 aa13.63□□□□□ -0.23
VPS33A-204ENST00000540669 SAMD1Q6SPF0 538 aaPredicted RBP13.63□□□□□ -0.23
VPS33A-204ENST00000540669 SYTL4Q96C24 671 aaPredicted RBP13.63□□□□□ -0.23
VPS33A-204ENST00000540669 ANKRD36CQ5JPF3 1778 aa13.63□□□□□ -0.23
VPS33A-204ENST00000540669 CNTNAP4Q9C0A0 1308 aa13.63□□□□□ -0.23
VPS33A-204ENST00000540669 PROM2Q8N271 834 aa13.62□□□□□ -0.23
VPS33A-204ENST00000540669 PXDNLA1KZ92 1463 aa13.61□□□□□ -0.23
VPS33A-204ENST00000540669 APBA3O96018 575 aa13.61□□□□□ -0.23
VPS33A-204ENST00000540669 CYP19A1P11511 503 aaPredicted RBP13.61□□□□□ -0.23
VPS33A-204ENST00000540669 SSH1Q8WYL5 1049 aa13.61□□□□□ -0.23
VPS33A-204ENST00000540669 LRRC4BQ9NT99 713 aa13.61□□□□□ -0.23
VPS33A-204ENST00000540669 PTCD1O75127 700 aaKnown RBP13.6□□□□□ -0.23
VPS33A-204ENST00000540669 ATXN8OSP0DMR3 200 aa13.6□□□□□ -0.23
VPS33A-204ENST00000540669 COL24A1Q17RW2 1714 aa13.6□□□□□ -0.23
VPS33A-204ENST00000540669 SLC27A3Q5K4L6 730 aa13.6□□□□□ -0.23
VPS33A-204ENST00000540669 DNAJC10Q8IXB1 793 aa13.6□□□□□ -0.23
VPS33A-204ENST00000540669 TEX13AQ9BXU3 409 aaPredicted RBP13.6□□□□□ -0.23
VPS33A-204ENST00000540669 RCAN3Q9UKA8 241 aa13.6□□□□□ -0.23
VPS33A-204ENST00000540669 USP16Q9Y5T5 823 aa13.6□□□□□ -0.23
VPS33A-204ENST00000540669 IBTKQ9P2D0 1353 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-204ENST00000540669 NBPF26B4DH59 902 aa13.59□□□□□ -0.23
VPS33A-204ENST00000540669 HMGB2P26583 209 aaKnown RBP13.59□□□□□ -0.23
VPS33A-204ENST00000540669 HDGFL1Q5TGJ6 251 aa13.59□□□□□ -0.23
VPS33A-204ENST00000540669 NBPF14Q5TI25 921 aa13.59□□□□□ -0.23
VPS33A-204ENST00000540669 NBPF10Q6P3W6 841 aaKnown RBP13.59□□□□□ -0.23
VPS33A-204ENST00000540669 MRPL50Q8N5N7 158 aaKnown RBP13.59□□□□□ -0.23
VPS33A-204ENST00000540669 NBPF15Q8N660 670 aa13.59□□□□□ -0.23
VPS33A-204ENST00000540669 LINC00116Q8NCU8 138 aa13.59□□□□□ -0.23
VPS33A-204ENST00000540669 CAMKK2Q96RR4 588 aa13.59□□□□□ -0.23
VPS33A-204ENST00000540669 PROSER3Q2NL68 480 aa13.58□□□□□ -0.24
VPS33A-204ENST00000540669 RC3H1Q5TC82 1133 aaKnown RBP13.58□□□□□ -0.24
VPS33A-204ENST00000540669 INTS5Q6P9B9 1019 aaKnown RBP13.58□□□□□ -0.24
VPS33A-204ENST00000540669 DDX21Q9NR30 783 aaKnown RBP eCLIP13.58□□□□□ -0.24
VPS33A-204ENST00000540669 ELL2O00472 640 aaPredicted RBP13.57□□□□□ -0.24
VPS33A-204ENST00000540669 TXNRD1Q16881 649 aa13.57□□□□□ -0.24
VPS33A-204ENST00000540669 CCDC30Q5VVM6 783 aa13.57□□□□□ -0.24
VPS33A-204ENST00000540669 CHMP4AQ9BY43 222 aa13.57□□□□□ -0.24
VPS33A-204ENST00000540669 CHPF2Q9P2E5 772 aa13.57□□□□□ -0.24
VPS33A-204ENST00000540669 DBF4Q9UBU7 674 aaPredicted RBP13.57□□□□□ -0.24
VPS33A-204ENST00000540669 KIF16BQ96L93 1317 aa13.57□□□□□ -0.24
VPS33A-204ENST00000540669 NUP98P52948 1817 aa13.57□□□□□ -0.24
VPS33A-204ENST00000540669 CASZ1Q86V15 1759 aa13.56□□□□□ -0.24
VPS33A-204ENST00000540669 CENPBP07199 599 aaPredicted RBP13.56□□□□□ -0.24
VPS33A-204ENST00000540669 RBM42Q9BTD8 480 aaKnown RBP13.56□□□□□ -0.24
VPS33A-204ENST00000540669 CCNL1Q9UK58 526 aaPredicted RBP13.56□□□□□ -0.24
VPS33A-204ENST00000540669 ZBTB1Q9Y2K1 713 aa13.56□□□□□ -0.24
VPS33A-204ENST00000540669 ADCY9O60503 1353 aa13.56□□□□□ -0.24
VPS33A-204ENST00000540669 ATP10DQ9P241 1426 aa13.56□□□□□ -0.24
VPS33A-204ENST00000540669 BCAR3O75815 825 aa13.55□□□□□ -0.24
VPS33A-204ENST00000540669 ATP6V1AP38606 617 aa13.55□□□□□ -0.24
VPS33A-204ENST00000540669 IL6STP40189 918 aaPredicted RBP13.55□□□□□ -0.24
VPS33A-204ENST00000540669 CRKLP46109 303 aaKnown RBP13.55□□□□□ -0.24
VPS33A-204ENST00000540669 EIF5P55010 431 aaKnown RBP13.55□□□□□ -0.24
VPS33A-204ENST00000540669 EN1Q05925 392 aaPredicted RBP13.55□□□□□ -0.24
VPS33A-204ENST00000540669 C1QBPQ07021 282 aaKnown RBP13.55□□□□□ -0.24
VPS33A-204ENST00000540669 DEFB132Q7Z7B7 95 aa13.55□□□□□ -0.24
VPS33A-204ENST00000540669 CCDC87Q9NVE4 849 aa13.55□□□□□ -0.24
VPS33A-204ENST00000540669 RGL2O15211 777 aa13.54□□□□□ -0.24
VPS33A-204ENST00000540669 STARD3NLO95772 234 aa13.54□□□□□ -0.24
VPS33A-204ENST00000540669 G2E3Q7L622 706 aa13.54□□□□□ -0.24
VPS33A-204ENST00000540669 AMIGO3Q86WK7 504 aa13.54□□□□□ -0.24
VPS33A-204ENST00000540669 ARHGAP45Q92619 1136 aa13.54□□□□□ -0.24
VPS33A-204ENST00000540669 AKT1S1Q96B36 256 aa13.54□□□□□ -0.24
VPS33A-204ENST00000540669 SMC4Q9NTJ3 1288 aa13.54□□□□□ -0.24
VPS33A-204ENST00000540669 ABCC4O15439 1325 aa13.54□□□□□ -0.24
VPS33A-204ENST00000540669 PTPRCP08575 1304 aa13.54□□□□□ -0.24
VPS33A-204ENST00000540669 A1BGP04217 495 aa13.53□□□□□ -0.24
VPS33A-204ENST00000540669 RRP1P56182 461 aaKnown RBP13.53□□□□□ -0.24
VPS33A-204ENST00000540669 FLIIQ13045 1269 aa13.53□□□□□ -0.24
VPS33A-204ENST00000540669 BCL2L13Q9BXK5 485 aa13.53□□□□□ -0.24
VPS33A-204ENST00000540669 HYPKQ9NX55 129 aa13.53□□□□□ -0.24
VPS33A-204ENST00000540669 COL15A1P39059 1388 aa13.53□□□□□ -0.24
VPS33A-204ENST00000540669 LAMB2P55268 1798 aa13.53□□□□□ -0.24
VPS33A-204ENST00000540669 KCNQ4P56696 695 aa13.52□□□□□ -0.25
VPS33A-204ENST00000540669 AFDNP55196 1824 aaKnown RBP13.52□□□□□ -0.25
VPS33A-204ENST00000540669 NRXN2Q9P2S2 1712 aa13.51□□□□□ -0.25
VPS33A-204ENST00000540669 RPS6KA4O75676 772 aa13.51□□□□□ -0.25
VPS33A-204ENST00000540669 ANXA1P04083 346 aa13.51□□□□□ -0.25
VPS33A-204ENST00000540669 TRIM27P14373 513 aa13.51□□□□□ -0.25
VPS33A-204ENST00000540669 EIF2S2P20042 333 aaKnown RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms