RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 ZBTB1Q9Y2K1 713 aa15.61■□□□□ 0.09
SYNE1-238ENST00000540663 COL15A1P39059 1388 aa15.61■□□□□ 0.09
SYNE1-238ENST00000540663 DLG5Q8TDM6 1919 aa15.6■□□□□ 0.09
SYNE1-238ENST00000540663 ZPR1O75312 459 aa15.6■□□□□ 0.09
SYNE1-238ENST00000540663 A0A087WZG4 1122 aa15.59■□□□□ 0.09
SYNE1-238ENST00000540663 LMOD3Q0VAK6 560 aa15.59■□□□□ 0.09
SYNE1-238ENST00000540663 GPR162Q16538 588 aa15.59■□□□□ 0.09
SYNE1-238ENST00000540663 PARP3Q9Y6F1 533 aa15.59■□□□□ 0.09
SYNE1-238ENST00000540663 GOLGB1Q14789 3259 aaKnown RBP15.58■□□□□ 0.08
SYNE1-238ENST00000540663 KCNQ3O43525 872 aa15.58■□□□□ 0.08
SYNE1-238ENST00000540663 SNRPA1P09661 255 aaKnown RBP15.58■□□□□ 0.08
SYNE1-238ENST00000540663 EIF5P55010 431 aaKnown RBP15.58■□□□□ 0.08
SYNE1-238ENST00000540663 SRP68Q9UHB9 627 aaKnown RBP15.58■□□□□ 0.08
SYNE1-238ENST00000540663 NARFQ9UHQ1 456 aa15.58■□□□□ 0.08
SYNE1-238ENST00000540663 CANXP27824 592 aaKnown RBP15.57■□□□□ 0.08
SYNE1-238ENST00000540663 IL6STP40189 918 aaPredicted RBP15.57■□□□□ 0.08
SYNE1-238ENST00000540663 RUNDC1Q96C34 613 aa15.57■□□□□ 0.08
SYNE1-238ENST00000540663 C10orf71Q711Q0 1435 aa15.57■□□□□ 0.08
SYNE1-238ENST00000540663 UTRNP46939 3433 aa15.57■□□□□ 0.08
SYNE1-238ENST00000540663 TMPOP42166 694 aaKnown RBP15.56■□□□□ 0.08
SYNE1-238ENST00000540663 RIPK4P57078 832 aa15.56■□□□□ 0.08
SYNE1-238ENST00000540663 FKBP8Q14318 412 aa15.56■□□□□ 0.08
SYNE1-238ENST00000540663 KIF13BQ9NQT8 1826 aa15.56■□□□□ 0.08
SYNE1-238ENST00000540663 KDM3BQ7LBC6 1761 aa15.55■□□□□ 0.08
SYNE1-238ENST00000540663 GRIN3BO60391 1043 aa15.55■□□□□ 0.08
SYNE1-238ENST00000540663 YY1P25490 414 aa15.55■□□□□ 0.08
SYNE1-238ENST00000540663 USPL1Q5W0Q7 1092 aa15.55■□□□□ 0.08
SYNE1-238ENST00000540663 NPM2Q86SE8 214 aaKnown RBP15.55■□□□□ 0.08
SYNE1-238ENST00000540663 BABAM1Q9NWV8 329 aa15.55■□□□□ 0.08
SYNE1-238ENST00000540663 TM4SF1P30408 202 aa15.54■□□□□ 0.08
SYNE1-238ENST00000540663 TGFB2P61812 414 aa15.54■□□□□ 0.08
SYNE1-238ENST00000540663 PELP1Q8IZL8 1130 aaKnown RBP15.54■□□□□ 0.08
SYNE1-238ENST00000540663 ADAMTS8Q9UP79 889 aa15.54■□□□□ 0.08
SYNE1-238ENST00000540663 A1BGP04217 495 aa15.53■□□□□ 0.08
SYNE1-238ENST00000540663 DDR1Q08345 913 aa15.53■□□□□ 0.08
SYNE1-238ENST00000540663 THUMPD2Q9BTF0 503 aaKnown RBP15.53■□□□□ 0.08
SYNE1-238ENST00000540663 USP16Q9Y5T5 823 aa15.53■□□□□ 0.08
SYNE1-238ENST00000540663 SCN7AQ01118 1682 aa15.52■□□□□ 0.08
SYNE1-238ENST00000540663 POLRMTO00411 1230 aaKnown RBP15.52■□□□□ 0.08
SYNE1-238ENST00000540663 CCDC146Q8IYE0 955 aa15.52■□□□□ 0.08
SYNE1-238ENST00000540663 MIS18AQ9NYP9 233 aa15.52■□□□□ 0.08
SYNE1-238ENST00000540663 PXDNLA1KZ92 1463 aa15.52■□□□□ 0.07
SYNE1-238ENST00000540663 LAMB4A4D0S4 1761 aa15.52■□□□□ 0.07
SYNE1-238ENST00000540663 CHD4Q14839 1912 aa15.51■□□□□ 0.07
SYNE1-238ENST00000540663 YBX3P16989 372 aaKnown RBP eCLIP15.51■□□□□ 0.07
SYNE1-238ENST00000540663 EIF4A1P60842 406 aaKnown RBP15.51■□□□□ 0.07
SYNE1-238ENST00000540663 BCL2L12Q9HB09 334 aa15.51■□□□□ 0.07
SYNE1-238ENST00000540663 PRAMEF22A3QJZ6 481 aa15.5■□□□□ 0.07
SYNE1-238ENST00000540663 RGL2O15211 777 aa15.5■□□□□ 0.07
SYNE1-238ENST00000540663 GIGYF1O75420 1035 aaPredicted RBP15.5■□□□□ 0.07
SYNE1-238ENST00000540663 NFIXQ14938 502 aa15.5■□□□□ 0.07
SYNE1-238ENST00000540663 TSPYL4Q9UJ04 414 aa15.5■□□□□ 0.07
SYNE1-238ENST00000540663 ZNF330Q9Y3S2 320 aaPredicted RBP15.5■□□□□ 0.07
SYNE1-238ENST00000540663 KIAA1551Q9HCM1 1747 aa15.5■□□□□ 0.07
SYNE1-238ENST00000540663 ANP32CO43423 234 aa15.49■□□□□ 0.07
SYNE1-238ENST00000540663 RRP7AQ9Y3A4 280 aaKnown RBP15.49■□□□□ 0.07
SYNE1-238ENST00000540663 NRXN2Q9P2S2 1712 aa15.48■□□□□ 0.07
SYNE1-238ENST00000540663 CAMTA2O94983 1202 aa15.48■□□□□ 0.07
SYNE1-238ENST00000540663 NEUROD2Q15784 382 aa15.48■□□□□ 0.07
SYNE1-238ENST00000540663 DZIP3Q86Y13 1208 aaKnown RBP15.48■□□□□ 0.07
SYNE1-238ENST00000540663 TRIM35Q9UPQ4 493 aa15.48■□□□□ 0.07
SYNE1-238ENST00000540663 TBC1D2BQ9UPU7 963 aa15.48■□□□□ 0.07
SYNE1-238ENST00000540663 ERBB4Q15303 1308 aa15.47■□□□□ 0.07
SYNE1-238ENST00000540663 BCORQ6W2J9 1755 aa15.47■□□□□ 0.07
SYNE1-238ENST00000540663 NBPF26B4DH59 902 aa15.47■□□□□ 0.07
SYNE1-238ENST00000540663 NBPF10Q6P3W6 841 aaKnown RBP15.47■□□□□ 0.07
SYNE1-238ENST00000540663 CLEC4GQ6UXB4 293 aa15.47■□□□□ 0.07
SYNE1-238ENST00000540663 NBPF15Q8N660 670 aa15.47■□□□□ 0.07
SYNE1-238ENST00000540663 ZNF652Q9Y2D9 606 aa15.47■□□□□ 0.07
SYNE1-238ENST00000540663 CARMIL3Q8ND23 1372 aa15.47■□□□□ 0.07
SYNE1-238ENST00000540663 A0A0G2JLW4 131 aa15.46■□□□□ 0.07
SYNE1-238ENST00000540663 SERPINB2P05120 415 aa15.46■□□□□ 0.07
SYNE1-238ENST00000540663 DPEP1P16444 411 aa15.46■□□□□ 0.07
SYNE1-238ENST00000540663 AFDNP55196 1824 aaKnown RBP15.45■□□□□ 0.06
SYNE1-238ENST00000540663 N4BP2Q86UW6 1770 aaPredicted RBP15.45■□□□□ 0.06
SYNE1-238ENST00000540663 CHL1O00533 1208 aa15.45■□□□□ 0.06
SYNE1-238ENST00000540663 CALD1Q05682 793 aaKnown RBP15.45■□□□□ 0.06
SYNE1-238ENST00000540663 TBC1D9BQ66K14 1250 aa15.45■□□□□ 0.06
SYNE1-238ENST00000540663 SETDB2Q96T68 719 aa15.45■□□□□ 0.06
SYNE1-238ENST00000540663 APAF1O14727 1248 aa15.44■□□□□ 0.06
SYNE1-238ENST00000540663 PIP4K2AP48426 406 aaPredicted RBP15.44■□□□□ 0.06
SYNE1-238ENST00000540663 PIM2Q9P1W9 311 aa15.44■□□□□ 0.06
SYNE1-238ENST00000540663 PDZRN3Q9UPQ7 1066 aa15.44■□□□□ 0.06
SYNE1-238ENST00000540663 KCNA3P22001 575 aa15.43■□□□□ 0.06
SYNE1-238ENST00000540663 BICDL1Q6ZP65 573 aa15.43■□□□□ 0.06
SYNE1-238ENST00000540663 BRCA1P38398 1863 aaKnown RBP15.43■□□□□ 0.06
SYNE1-238ENST00000540663 ERVV-1B6SEH8 477 aa15.42■□□□□ 0.06
SYNE1-238ENST00000540663 CFAP44Q96MT7 982 aa15.42■□□□□ 0.06
SYNE1-238ENST00000540663 MRS2Q9HD23 443 aa15.42■□□□□ 0.06
SYNE1-238ENST00000540663 BCS1LQ9Y276 419 aa15.42■□□□□ 0.06
SYNE1-238ENST00000540663 HOXB7P09629 217 aa15.41■□□□□ 0.06
SYNE1-238ENST00000540663 CCDC184Q52MB2 194 aa15.41■□□□□ 0.06
SYNE1-238ENST00000540663 DALRD3Q5D0E6 543 aaKnown RBP15.41■□□□□ 0.06
SYNE1-238ENST00000540663 KIF6Q6ZMV9 814 aa15.41■□□□□ 0.06
SYNE1-238ENST00000540663 CNBD1Q8NA66 436 aa15.41■□□□□ 0.06
SYNE1-238ENST00000540663 BRIP1Q9BX63 1249 aa15.41■□□□□ 0.06
SYNE1-238ENST00000540663 LAS1LQ9Y4W2 734 aaKnown RBP15.41■□□□□ 0.06
SYNE1-238ENST00000540663 PDE6BP35913 854 aa15.4■□□□□ 0.06
SYNE1-238ENST00000540663 PRR5LQ6MZQ0 368 aa15.4■□□□□ 0.06
SYNE1-238ENST00000540663 ZNF784Q8NCA9 323 aaPredicted RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms