RNA–Protein interactions for RNA: ENST00000540659.1

PAAF1-209, Transcript of proteasomal ATPase associated factor 1, humanhuman

TSL 3

Gene PAAF1, Length 349 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1-209ENST00000540659 DDX54Q8TDD1 881 aaKnown RBP12.06□□□□□ -0.48
PAAF1-209ENST00000540659 DCAF5Q96JK2 942 aa12.06□□□□□ -0.48
PAAF1-209ENST00000540659 CDCA7Q9BWT1 371 aaPredicted RBP12.06□□□□□ -0.48
PAAF1-209ENST00000540659 CHMP4BQ9H444 224 aaKnown RBP12.06□□□□□ -0.48
PAAF1-209ENST00000540659 TNS1Q9HBL0 1735 aaKnown RBP12.06□□□□□ -0.48
PAAF1-209ENST00000540659 PRAMEF22A3QJZ6 481 aa12.05□□□□□ -0.48
PAAF1-209ENST00000540659 FLIIQ13045 1269 aa12.05□□□□□ -0.48
PAAF1-209ENST00000540659 PHAXQ9H814 394 aaKnown RBP12.05□□□□□ -0.48
PAAF1-209ENST00000540659 CHPF2Q9P2E5 772 aa12.05□□□□□ -0.48
PAAF1-209ENST00000540659 RBM19Q9Y4C8 960 aaKnown RBP12.05□□□□□ -0.48
PAAF1-209ENST00000540659 LAMB4A4D0S4 1761 aa12.05□□□□□ -0.48
PAAF1-209ENST00000540659 TNS2Q63HR2 1409 aa12.04□□□□□ -0.48
PAAF1-209ENST00000540659 ANXA1P04083 346 aa12.04□□□□□ -0.48
PAAF1-209ENST00000540659 INTS3Q68E01 1043 aaKnown RBP12.04□□□□□ -0.48
PAAF1-209ENST00000540659 TTC5Q8N0Z6 440 aa12.04□□□□□ -0.48
PAAF1-209ENST00000540659 PAPPAQ13219 1627 aa12.04□□□□□ -0.48
PAAF1-209ENST00000540659 GIGYF1O75420 1035 aaPredicted RBP12.03□□□□□ -0.48
PAAF1-209ENST00000540659 HOXB7P09629 217 aa12.03□□□□□ -0.48
PAAF1-209ENST00000540659 FAM182BQ5T319 152 aa12.03□□□□□ -0.48
PAAF1-209ENST00000540659 ZNF790Q6PG37 636 aa12.03□□□□□ -0.48
PAAF1-209ENST00000540659 PDZRN3Q9UPQ7 1066 aa12.03□□□□□ -0.48
PAAF1-209ENST00000540659 ITGB4P16144 1822 aa12.02□□□□□ -0.48
PAAF1-209ENST00000540659 SBF2Q86WG5 1849 aa12.02□□□□□ -0.48
PAAF1-209ENST00000540659 UBR2Q8IWV8 1755 aa12.02□□□□□ -0.49
PAAF1-209ENST00000540659 CCT4P50991 539 aaKnown RBP12.01□□□□□ -0.49
PAAF1-209ENST00000540659 HDAC1Q13547 482 aaPredicted RBP12.01□□□□□ -0.49
PAAF1-209ENST00000540659 HEG1Q9ULI3 1381 aa12.01□□□□□ -0.49
PAAF1-209ENST00000540659 PXDNLA1KZ92 1463 aa12.01□□□□□ -0.49
PAAF1-209ENST00000540659 DOT1LQ8TEK3 1739 aa12□□□□□ -0.49
PAAF1-209ENST00000540659 MEIS3Q99687 375 aa12□□□□□ -0.49
PAAF1-209ENST00000540659 DBF4Q9UBU7 674 aaPredicted RBP12□□□□□ -0.49
PAAF1-209ENST00000540659 MYL6BP14649 208 aa11.99□□□□□ -0.49
PAAF1-209ENST00000540659 PDE4AP27815 886 aa11.99□□□□□ -0.49
PAAF1-209ENST00000540659 DDB1Q16531 1140 aa11.99□□□□□ -0.49
PAAF1-209ENST00000540659 PROSER3Q2NL68 480 aa11.99□□□□□ -0.49
PAAF1-209ENST00000540659 ZNF496Q96IT1 587 aaPredicted RBP11.99□□□□□ -0.49
PAAF1-209ENST00000540659 FMNL2Q96PY5 1086 aa11.99□□□□□ -0.49
PAAF1-209ENST00000540659 ERVV-2B6SEH9 535 aa11.98□□□□□ -0.49
PAAF1-209ENST00000540659 AIMP1Q12904 312 aaKnown RBP11.98□□□□□ -0.49
PAAF1-209ENST00000540659 NKX1-1Q15270 411 aaPredicted RBP11.98□□□□□ -0.49
PAAF1-209ENST00000540659 NHSQ6T4R5 1651 aa11.97□□□□□ -0.49
PAAF1-209ENST00000540659 KCPQ6ZWJ8 1503 aa11.97□□□□□ -0.49
PAAF1-209ENST00000540659 PI4KAP2A4QPH2 592 aa11.97□□□□□ -0.49
PAAF1-209ENST00000540659 EXOC5O00471 708 aa11.97□□□□□ -0.49
PAAF1-209ENST00000540659 SNRPA1P09661 255 aaKnown RBP11.97□□□□□ -0.49
PAAF1-209ENST00000540659 PIP4K2AP48426 406 aaPredicted RBP11.97□□□□□ -0.49
PAAF1-209ENST00000540659 SIRT2Q8IXJ6 389 aa11.97□□□□□ -0.49
PAAF1-209ENST00000540659 PI4KAP1Q8N8J0 262 aa11.97□□□□□ -0.49
PAAF1-209ENST00000540659 TMOD3Q9NYL9 352 aa11.97□□□□□ -0.49
PAAF1-209ENST00000540659 USP16Q9Y5T5 823 aa11.97□□□□□ -0.49
PAAF1-209ENST00000540659 AFDNP55196 1824 aaKnown RBP11.97□□□□□ -0.49
PAAF1-209ENST00000540659 ATP10DQ9P241 1426 aa11.96□□□□□ -0.49
PAAF1-209ENST00000540659 ADCY9O60503 1353 aa11.96□□□□□ -0.49
PAAF1-209ENST00000540659 HMGB2P26583 209 aaKnown RBP11.96□□□□□ -0.49
PAAF1-209ENST00000540659 CEP85Q6P2H3 762 aa11.96□□□□□ -0.49
PAAF1-209ENST00000540659 FAM196AQ6ZSG2 479 aa11.96□□□□□ -0.49
PAAF1-209ENST00000540659 SMC5Q8IY18 1101 aa11.96□□□□□ -0.49
PAAF1-209ENST00000540659 MARCH10Q8NA82 808 aaPredicted RBP11.96□□□□□ -0.49
PAAF1-209ENST00000540659 DNAAF4Q8WXU2 420 aa11.96□□□□□ -0.49
PAAF1-209ENST00000540659 SRCIN1Q9C0H9 1055 aa11.96□□□□□ -0.49
PAAF1-209ENST00000540659 BCL11AQ9H165 835 aa11.96□□□□□ -0.49
PAAF1-209ENST00000540659 DDX21Q9NR30 783 aaKnown RBP eCLIP11.96□□□□□ -0.49
PAAF1-209ENST00000540659 HYPKQ9NX55 129 aa11.96□□□□□ -0.49
PAAF1-209ENST00000540659 ARFGEF2Q9Y6D5 1785 aa11.96□□□□□ -0.49
PAAF1-209ENST00000540659 BCL9O00512 1426 aa11.95□□□□□ -0.5
PAAF1-209ENST00000540659 RREB1Q92766 1687 aa11.95□□□□□ -0.5
PAAF1-209ENST00000540659 PTCD1O75127 700 aaKnown RBP11.95□□□□□ -0.5
PAAF1-209ENST00000540659 ANKRD45Q5TZF3 282 aa11.95□□□□□ -0.5
PAAF1-209ENST00000540659 CCDC125Q86Z20 511 aa11.95□□□□□ -0.5
PAAF1-209ENST00000540659 ANKRD44Q8N8A2 993 aa11.95□□□□□ -0.5
PAAF1-209ENST00000540659 GCC1Q96CN9 775 aa11.95□□□□□ -0.5
PAAF1-209ENST00000540659 BACH2Q9BYV9 841 aa11.95□□□□□ -0.5
PAAF1-209ENST00000540659 MAP3K2Q9Y2U5 619 aa11.95□□□□□ -0.5
PAAF1-209ENST00000540659 RGPD3A6NKT7 1758 aaPredicted RBP11.95□□□□□ -0.5
PAAF1-209ENST00000540659 RGPD4Q7Z3J3 1758 aa11.95□□□□□ -0.5
PAAF1-209ENST00000540659 TRIM37O94972 964 aa11.94□□□□□ -0.5
PAAF1-209ENST00000540659 GNAI2P04899 355 aa11.94□□□□□ -0.5
PAAF1-209ENST00000540659 GNAI3P08754 354 aa11.94□□□□□ -0.5
PAAF1-209ENST00000540659 SF3B2Q13435 895 aaKnown RBP11.94□□□□□ -0.5
PAAF1-209ENST00000540659 PDIA6Q15084 440 aa11.94□□□□□ -0.5
PAAF1-209ENST00000540659 FAM161AQ3B820 660 aa11.94□□□□□ -0.5
PAAF1-209ENST00000540659 DEFB132Q7Z7B7 95 aa11.94□□□□□ -0.5
PAAF1-209ENST00000540659 RPAP2Q8IXW5 612 aaPredicted RBP11.94□□□□□ -0.5
PAAF1-209ENST00000540659 SYTL4Q96C24 671 aaPredicted RBP11.94□□□□□ -0.5
PAAF1-209ENST00000540659 LNPKQ9C0E8 428 aa11.94□□□□□ -0.5
PAAF1-209ENST00000540659 KAT6BQ8WYB5 2073 aa11.94□□□□□ -0.5
PAAF1-209ENST00000540659 BTAF1O14981 1849 aa11.93□□□□□ -0.5
PAAF1-209ENST00000540659 DDX58O95786 925 aaKnown RBP11.93□□□□□ -0.5
PAAF1-209ENST00000540659 NUCB1Q02818 461 aa11.93□□□□□ -0.5
PAAF1-209ENST00000540659 BEND3Q5T5X7 828 aa11.93□□□□□ -0.5
PAAF1-209ENST00000540659 KSR2Q6VAB6 950 aa11.93□□□□□ -0.5
PAAF1-209ENST00000540659 RIC3Q7Z5B4 369 aa11.93□□□□□ -0.5
PAAF1-209ENST00000540659 NPM2Q86SE8 214 aaKnown RBP11.93□□□□□ -0.5
PAAF1-209ENST00000540659 CHD1LQ86WJ1 897 aa11.93□□□□□ -0.5
PAAF1-209ENST00000540659 XAGE3Q8WTP9 111 aa11.93□□□□□ -0.5
PAAF1-209ENST00000540659 NUP188Q5SRE5 1749 aa11.93□□□□□ -0.5
PAAF1-209ENST00000540659 APBB1O00213 710 aa11.92□□□□□ -0.5
PAAF1-209ENST00000540659 UBTFL1P0CB47 393 aaPredicted RBP11.92□□□□□ -0.5
PAAF1-209ENST00000540659 C8orf34Q49A92 452 aa11.92□□□□□ -0.5
PAAF1-209ENST00000540659 COPS6Q7L5N1 327 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms