RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 UNC5CLQ8IV45 518 aa15.31■□□□□ 0.04
SFSWAP-209ENST00000540469 TMEM87AQ8NBN3 555 aa15.31■□□□□ 0.04
SFSWAP-209ENST00000540469 FAM200AQ8TCP9 573 aa15.31■□□□□ 0.04
SFSWAP-209ENST00000540469 ERICH4A6NGS2 130 aa15.31■□□□□ 0.04
SFSWAP-209ENST00000540469 CPA1P15085 419 aa15.31■□□□□ 0.04
SFSWAP-209ENST00000540469 NAA30Q147X3 362 aaPredicted RBP15.31■□□□□ 0.04
SFSWAP-209ENST00000540469 SMTNL1A8MU46 457 aa15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 GJB2P29033 226 aa15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 TRERF1Q96PN7 1200 aa15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 CASTP20810 708 aaKnown RBP15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 CERS3Q8IU89 383 aa15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 TNMDQ9H2S6 317 aa15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 KNDC1Q76NI1 1749 aa15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 KCNJ4P48050 445 aa15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 G2E3Q7L622 706 aa15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 V9GYY5 206 aaPredicted RBP15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 ARHGEF40Q8TER5 1519 aa15.3■□□□□ 0.04
SFSWAP-209ENST00000540469 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.29■□□□□ 0.04
SFSWAP-209ENST00000540469 NPHP1O15259 732 aa15.29■□□□□ 0.04
SFSWAP-209ENST00000540469 AEBP1Q8IUX7 1158 aa15.29■□□□□ 0.04
SFSWAP-209ENST00000540469 DDX54Q8TDD1 881 aaKnown RBP15.29■□□□□ 0.04
SFSWAP-209ENST00000540469 RPAP1Q9BWH6 1393 aaPredicted RBP15.29■□□□□ 0.04
SFSWAP-209ENST00000540469 CCDC66A2RUB6 948 aa15.29■□□□□ 0.04
SFSWAP-209ENST00000540469 RTF1Q92541 710 aaKnown RBP15.29■□□□□ 0.04
SFSWAP-209ENST00000540469 TSPYL4Q9UJ04 414 aa15.29■□□□□ 0.04
SFSWAP-209ENST00000540469 CTIFO43310 598 aaKnown RBP15.29■□□□□ 0.04
SFSWAP-209ENST00000540469 IDI1Q13907 227 aa15.29■□□□□ 0.04
SFSWAP-209ENST00000540469 CWC27Q6UX04 472 aaKnown RBP15.29■□□□□ 0.04
SFSWAP-209ENST00000540469 GNAI3P08754 354 aa15.28■□□□□ 0.04
SFSWAP-209ENST00000540469 HSPA4P34932 840 aa15.28■□□□□ 0.04
SFSWAP-209ENST00000540469 TYRO3Q06418 890 aa15.28■□□□□ 0.04
SFSWAP-209ENST00000540469 YTHDC2Q9H6S0 1430 aaKnown RBP15.28■□□□□ 0.04
SFSWAP-209ENST00000540469 KRT85P78386 507 aa15.28■□□□□ 0.04
SFSWAP-209ENST00000540469 GABPB1Q06547 395 aaPredicted RBP15.28■□□□□ 0.04
SFSWAP-209ENST00000540469 NRBP1Q9UHY1 535 aa15.28■□□□□ 0.04
SFSWAP-209ENST00000540469 SPG7Q9UQ90 795 aa15.28■□□□□ 0.04
SFSWAP-209ENST00000540469 PNMA6EA0A0J9YXQ4 647 aa15.27■□□□□ 0.04
SFSWAP-209ENST00000540469 ANO6Q4KMQ2 910 aa15.27■□□□□ 0.04
SFSWAP-209ENST00000540469 CTNNA3Q9UI47 895 aa15.27■□□□□ 0.03
SFSWAP-209ENST00000540469 SNX14Q9Y5W7 946 aa15.27■□□□□ 0.03
SFSWAP-209ENST00000540469 SURF6O75683 361 aaKnown RBP15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 OS9Q13438 667 aaPredicted RBP15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 WAPLQ7Z5K2 1190 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 KRT222Q8N1A0 295 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 BICD2Q8TD16 824 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 JAKMIP1Q96N16 626 aaKnown RBP15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 CLIP2Q9UDT6 1046 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 PAXBP1Q9Y5B6 917 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 CAMSAP1Q5T5Y3 1602 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 YEATS2Q9ULM3 1422 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 LARP1BQ659C4 914 aaKnown RBP15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 IL25Q9H293 177 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 LRRFIP2Q9Y608 721 aaKnown RBP15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 PPLO60437 1756 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 GOLGA6L19H0YKK7 550 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 CEP135Q66GS9 1140 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 FAM173BQ6P4H8 233 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 RUFY3Q7L099 469 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 SSH2Q76I76 1423 aa15.26■□□□□ 0.03
SFSWAP-209ENST00000540469 FUCA2Q9BTY2 467 aa15.25■□□□□ 0.03
SFSWAP-209ENST00000540469 PDRG1Q9NUG6 133 aa15.25■□□□□ 0.03
SFSWAP-209ENST00000540469 MROH1Q8NDA8 1641 aa15.25■□□□□ 0.03
SFSWAP-209ENST00000540469 CHL1O00533 1208 aa15.25■□□□□ 0.03
SFSWAP-209ENST00000540469 ARHGEF28Q8N1W1 1705 aaKnown RBP15.25■□□□□ 0.03
SFSWAP-209ENST00000540469 DACT1Q9NYF0 836 aa15.25■□□□□ 0.03
SFSWAP-209ENST00000540469 CNTROBQ8N137 903 aa15.25■□□□□ 0.03
SFSWAP-209ENST00000540469 NECAB1Q8N987 351 aa15.25■□□□□ 0.03
SFSWAP-209ENST00000540469 ZBTB9Q96C00 473 aa15.25■□□□□ 0.03
SFSWAP-209ENST00000540469 RASEFQ8IZ41 740 aa15.24■□□□□ 0.03
SFSWAP-209ENST00000540469 CBX8Q9HC52 389 aa15.24■□□□□ 0.03
SFSWAP-209ENST00000540469 ABCC3O15438 1527 aa15.24■□□□□ 0.03
SFSWAP-209ENST00000540469 ZSCAN25Q6NSZ9 544 aa15.24■□□□□ 0.03
SFSWAP-209ENST00000540469 TFIP11Q9UBB9 837 aaKnown RBP15.24■□□□□ 0.03
SFSWAP-209ENST00000540469 DDX41Q9UJV9 622 aaKnown RBP15.24■□□□□ 0.03
SFSWAP-209ENST00000540469 MTMR6Q9Y217 621 aa15.24■□□□□ 0.03
SFSWAP-209ENST00000540469 LARGE1O95461 756 aa15.23■□□□□ 0.03
SFSWAP-209ENST00000540469 UBTFL1P0CB47 393 aaPredicted RBP15.23■□□□□ 0.03
SFSWAP-209ENST00000540469 LIG1P18858 919 aa15.23■□□□□ 0.03
SFSWAP-209ENST00000540469 RAD50Q92878 1312 aa15.23■□□□□ 0.03
SFSWAP-209ENST00000540469 ZNF165P49910 485 aa15.23■□□□□ 0.03
SFSWAP-209ENST00000540469 TRMT1Q9NXH9 659 aaKnown RBP15.23■□□□□ 0.03
SFSWAP-209ENST00000540469 CYP46A1Q9Y6A2 500 aa15.23■□□□□ 0.03
SFSWAP-209ENST00000540469 PTPN14Q15678 1187 aa15.23■□□□□ 0.03
SFSWAP-209ENST00000540469 IPO4Q8TEX9 1081 aaKnown RBP15.23■□□□□ 0.03
SFSWAP-209ENST00000540469 MRVI1Q9Y6F6 885 aa15.23■□□□□ 0.03
SFSWAP-209ENST00000540469 ATP8B2P98198 1209 aa15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 PRPF40BQ6NWY9 871 aaKnown RBP15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 FILIP1Q7Z7B0 1213 aa15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 SPATA32Q96LK8 384 aa15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 ESF1Q9H501 851 aaKnown RBP15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 CD163L1Q9NR16 1453 aa15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 DNAJC25Q9H1X3 360 aa15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 ZNF75DP51815 510 aa15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 FBXO31Q5XUX0 539 aaPredicted RBP15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 TTC6Q86TZ1 520 aa15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 ZNF397Q8NF99 534 aaPredicted RBP15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 KIF18AQ8NI77 898 aa15.22■□□□□ 0.03
SFSWAP-209ENST00000540469 SGSM2O43147 1006 aa15.21■□□□□ 0.03
SFSWAP-209ENST00000540469 BECN2A8MW95 431 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 127.6 ms