RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 REC8O95072 547 aa20.68■□□□□ 0.9
USP28-208ENST00000540438 RHPN1Q8TCX5 695 aa20.68■□□□□ 0.9
USP28-208ENST00000540438 GBP4Q96PP9 640 aa20.68■□□□□ 0.9
USP28-208ENST00000540438 BAG4O95429 457 aaKnown RBP20.68■□□□□ 0.9
USP28-208ENST00000540438 PXDNQ92626 1479 aa20.68■□□□□ 0.9
USP28-208ENST00000540438 PRPF40AO75400 957 aaKnown RBP20.67■□□□□ 0.9
USP28-208ENST00000540438 ARHGEF25Q86VW2 580 aa20.67■□□□□ 0.9
USP28-208ENST00000540438 BEND3Q5T5X7 828 aa20.67■□□□□ 0.9
USP28-208ENST00000540438 RRAGDQ9NQL2 400 aaPredicted RBP20.67■□□□□ 0.9
USP28-208ENST00000540438 NWD1Q149M9 1564 aa20.67■□□□□ 0.9
USP28-208ENST00000540438 EIF5BO60841 1220 aaKnown RBP20.67■□□□□ 0.9
USP28-208ENST00000540438 CCDC8Q9H0W5 538 aaPredicted RBP20.67■□□□□ 0.9
USP28-208ENST00000540438 KIF24Q5T7B8 1368 aa20.66■□□□□ 0.9
USP28-208ENST00000540438 DDX11L8A8MPP1 907 aa20.66■□□□□ 0.9
USP28-208ENST00000540438 ST18O60284 1047 aa20.66■□□□□ 0.9
USP28-208ENST00000540438 CAVIN1Q6NZI2 390 aaKnown RBP20.66■□□□□ 0.9
USP28-208ENST00000540438 NALCNQ8IZF0 1738 aa20.65■□□□□ 0.9
USP28-208ENST00000540438 HTATSF1O43719 755 aaKnown RBP20.65■□□□□ 0.9
USP28-208ENST00000540438 AKAP4Q5JQC9 854 aa20.65■□□□□ 0.9
USP28-208ENST00000540438 FMN2Q9NZ56 1722 aa20.65■□□□□ 0.9
USP28-208ENST00000540438 IBTKQ9P2D0 1353 aaPredicted RBP20.65■□□□□ 0.9
USP28-208ENST00000540438 KCNH5Q8NCM2 988 aa20.64■□□□□ 0.9
USP28-208ENST00000540438 RGPD2P0DJD1 1756 aa20.64■□□□□ 0.9
USP28-208ENST00000540438 TMX3Q96JJ7 454 aa20.64■□□□□ 0.89
USP28-208ENST00000540438 ZNF330Q9Y3S2 320 aaPredicted RBP20.64■□□□□ 0.89
USP28-208ENST00000540438 ATP5J2-PTCD1G3V325 749 aa20.64■□□□□ 0.89
USP28-208ENST00000540438 PTCD1O75127 700 aaKnown RBP20.64■□□□□ 0.89
USP28-208ENST00000540438 GIGYF1O75420 1035 aaPredicted RBP20.64■□□□□ 0.89
USP28-208ENST00000540438 CHGBP05060 677 aa20.64■□□□□ 0.89
USP28-208ENST00000540438 COL9A3Q14050 684 aaPredicted RBP20.63■□□□□ 0.89
USP28-208ENST00000540438 EDC3Q96F86 508 aaKnown RBP20.63■□□□□ 0.89
USP28-208ENST00000540438 NSFL1CQ9UNZ2 370 aaKnown RBP20.63■□□□□ 0.89
USP28-208ENST00000540438 ZDHHC9Q9Y397 364 aa20.63■□□□□ 0.89
USP28-208ENST00000540438 NCOA3Q9Y6Q9 1424 aa20.62■□□□□ 0.89
USP28-208ENST00000540438 ADCY9O60503 1353 aa20.62■□□□□ 0.89
USP28-208ENST00000540438 TCEANC2Q96MN5 208 aa20.62■□□□□ 0.89
USP28-208ENST00000540438 GRPEL1Q9HAV7 217 aa20.62■□□□□ 0.89
USP28-208ENST00000540438 SSH3Q8TE77 659 aa20.62■□□□□ 0.89
USP28-208ENST00000540438 RAPGEF4Q8WZA2 1011 aa20.62■□□□□ 0.89
USP28-208ENST00000540438 TLR7Q9NYK1 1049 aaKnown RBP20.62■□□□□ 0.89
USP28-208ENST00000540438 USP16Q9Y5T5 823 aa20.62■□□□□ 0.89
USP28-208ENST00000540438 SALL3Q9BXA9 1300 aa20.61■□□□□ 0.89
USP28-208ENST00000540438 RIC3Q7Z5B4 369 aa20.61■□□□□ 0.89
USP28-208ENST00000540438 RASEFQ8IZ41 740 aa20.6■□□□□ 0.89
USP28-208ENST00000540438 L1TD1Q5T7N2 865 aaKnown RBP20.6■□□□□ 0.89
USP28-208ENST00000540438 SUCLG2Q96I99 432 aa20.6■□□□□ 0.89
USP28-208ENST00000540438 DBF4Q9UBU7 674 aaPredicted RBP20.6■□□□□ 0.89
USP28-208ENST00000540438 ANKARQ7Z5J8 1434 aa20.59■□□□□ 0.89
USP28-208ENST00000540438 AACSQ86V21 672 aa20.59■□□□□ 0.89
USP28-208ENST00000540438 BICC1Q9H694 974 aaKnown RBP20.59■□□□□ 0.89
USP28-208ENST00000540438 COPS6Q7L5N1 327 aa20.59■□□□□ 0.89
USP28-208ENST00000540438 ZNF496Q96IT1 587 aaPredicted RBP20.59■□□□□ 0.89
USP28-208ENST00000540438 CEMIPQ8WUJ3 1361 aa20.59■□□□□ 0.89
USP28-208ENST00000540438 PI4K2BQ8TCG2 481 aa20.58■□□□□ 0.89
USP28-208ENST00000540438 MYD88Q99836 296 aa20.58■□□□□ 0.89
USP28-208ENST00000540438 OSBPL3Q9H4L5 887 aa20.58■□□□□ 0.89
USP28-208ENST00000540438 FSD2A1L4K1 749 aa20.58■□□□□ 0.88
USP28-208ENST00000540438 ATF3P18847 181 aa20.58■□□□□ 0.88
USP28-208ENST00000540438 MPNDQ8N594 471 aa20.58■□□□□ 0.88
USP28-208ENST00000540438 XAGE3Q8WTP9 111 aa20.58■□□□□ 0.88
USP28-208ENST00000540438 BOLA2Q9H3K6 86 aa20.58■□□□□ 0.88
USP28-208ENST00000540438 CHMP3Q9Y3E7 222 aa20.57■□□□□ 0.88
USP28-208ENST00000540438 EPHA10Q5JZY3 1008 aa20.57■□□□□ 0.88
USP28-208ENST00000540438 CIZ1Q9ULV3 898 aaPredicted RBP20.56■□□□□ 0.88
USP28-208ENST00000540438 LTN1O94822 1766 aa20.56■□□□□ 0.88
USP28-208ENST00000540438 XRN1Q8IZH2 1706 aaKnown RBP20.56■□□□□ 0.88
USP28-208ENST00000540438 GOLGA6L22H0YM25 854 aa20.56■□□□□ 0.88
USP28-208ENST00000540438 PTH1RQ03431 593 aa20.56■□□□□ 0.88
USP28-208ENST00000540438 KIF1BPQ96EK5 621 aa20.56■□□□□ 0.88
USP28-208ENST00000540438 CCDC85AQ96PX6 553 aaPredicted RBP20.55■□□□□ 0.88
USP28-208ENST00000540438 IFIT2P09913 472 aaKnown RBP20.55■□□□□ 0.88
USP28-208ENST00000540438 KAZALD1Q96I82 304 aa20.55■□□□□ 0.88
USP28-208ENST00000540438 SLFNL1Q499Z3 407 aa20.54■□□□□ 0.88
USP28-208ENST00000540438 RNF214Q8ND24 703 aa20.54■□□□□ 0.88
USP28-208ENST00000540438 FAM227BQ96M60 508 aa20.54■□□□□ 0.88
USP28-208ENST00000540438 ADGRL3Q9HAR2 1447 aa20.54■□□□□ 0.88
USP28-208ENST00000540438 ZNF790Q6PG37 636 aa20.54■□□□□ 0.88
USP28-208ENST00000540438 KSR2Q6VAB6 950 aa20.54■□□□□ 0.88
USP28-208ENST00000540438 NPHP4O75161 1426 aaPredicted RBP20.54■□□□□ 0.88
USP28-208ENST00000540438 PPFIA3O75145 1194 aa20.53■□□□□ 0.88
USP28-208ENST00000540438 ERBB3P21860 1342 aa20.53■□□□□ 0.88
USP28-208ENST00000540438 MARF1Q9Y4F3 1742 aaKnown RBP20.53■□□□□ 0.88
USP28-208ENST00000540438 IGKV5-2P06315 115 aa20.53■□□□□ 0.88
USP28-208ENST00000540438 POLA2Q14181 598 aa20.53■□□□□ 0.88
USP28-208ENST00000540438 PRPF40BQ6NWY9 871 aaKnown RBP20.53■□□□□ 0.88
USP28-208ENST00000540438 CLASRPQ8N2M8 674 aaKnown RBP20.53■□□□□ 0.88
USP28-208ENST00000540438 ADCK5Q3MIX3 580 aa20.53■□□□□ 0.88
USP28-208ENST00000540438 AMOTQ4VCS5 1084 aa20.53■□□□□ 0.88
USP28-208ENST00000540438 EAF2Q96CJ1 260 aaPredicted RBP20.53■□□□□ 0.88
USP28-208ENST00000540438 MCCP23508 829 aa20.52■□□□□ 0.88
USP28-208ENST00000540438 GPT2Q8TD30 523 aa20.52■□□□□ 0.88
USP28-208ENST00000540438 STRN4Q9NRL3 753 aa20.52■□□□□ 0.88
USP28-208ENST00000540438 DIAPH3Q9NSV4 1193 aa20.52■□□□□ 0.88
USP28-208ENST00000540438 KAT6BQ8WYB5 2073 aa20.52■□□□□ 0.88
USP28-208ENST00000540438 KCNJ4P48050 445 aa20.52■□□□□ 0.88
USP28-208ENST00000540438 LMBRD1Q9NUN5 540 aa20.52■□□□□ 0.88
USP28-208ENST00000540438 TAF6LQ9Y6J9 622 aa20.52■□□□□ 0.88
USP28-208ENST00000540438 PDIA6Q15084 440 aa20.51■□□□□ 0.87
USP28-208ENST00000540438 UBE3BQ7Z3V4 1068 aa20.51■□□□□ 0.87
USP28-208ENST00000540438 C19orf44Q9H6X5 657 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms