RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 NECTIN2Q92692 538 aa24.33■■□□□ 1.49
TNFRSF1A-213ENST00000540022 USP16Q9Y5T5 823 aa24.33■■□□□ 1.49
TNFRSF1A-213ENST00000540022 HDGFL1Q5TGJ6 251 aa24.32■■□□□ 1.48
TNFRSF1A-213ENST00000540022 BCL2L13Q9BXK5 485 aa24.32■■□□□ 1.48
TNFRSF1A-213ENST00000540022 LOC102724428A0A0B4J2F2 783 aa24.31■■□□□ 1.48
TNFRSF1A-213ENST00000540022 BCAR3O75815 825 aa24.31■■□□□ 1.48
TNFRSF1A-213ENST00000540022 SIK1P57059 783 aa24.31■■□□□ 1.48
TNFRSF1A-213ENST00000540022 SLC15A2Q16348 729 aa24.31■■□□□ 1.48
TNFRSF1A-213ENST00000540022 ALDH1L2Q3SY69 923 aa24.3■■□□□ 1.48
TNFRSF1A-213ENST00000540022 DNAJC10Q8IXB1 793 aa24.3■■□□□ 1.48
TNFRSF1A-213ENST00000540022 STK32BQ9NY57 414 aa24.3■■□□□ 1.48
TNFRSF1A-213ENST00000540022 CCNL1Q9UK58 526 aaPredicted RBP24.3■■□□□ 1.48
TNFRSF1A-213ENST00000540022 ITPK1Q13572 414 aa24.3■■□□□ 1.48
TNFRSF1A-213ENST00000540022 CCDC30Q5VVM6 783 aa24.3■■□□□ 1.48
TNFRSF1A-213ENST00000540022 PDGFDQ9GZP0 370 aaPredicted RBP24.3■■□□□ 1.48
TNFRSF1A-213ENST00000540022 SMC4Q9NTJ3 1288 aa24.29■■□□□ 1.48
TNFRSF1A-213ENST00000540022 TUBGCP6Q96RT7 1819 aa24.29■■□□□ 1.48
TNFRSF1A-213ENST00000540022 C5P01031 1676 aa24.29■■□□□ 1.48
TNFRSF1A-213ENST00000540022 ATP6V1AP38606 617 aa24.28■■□□□ 1.48
TNFRSF1A-213ENST00000540022 SUPT16HQ9Y5B9 1047 aaKnown RBP24.28■■□□□ 1.48
TNFRSF1A-213ENST00000540022 QSER1Q2KHR3 1735 aa24.27■■□□□ 1.48
TNFRSF1A-213ENST00000540022 SLC27A3Q5K4L6 730 aa24.27■■□□□ 1.48
TNFRSF1A-213ENST00000540022 TEX13AQ9BXU3 409 aaPredicted RBP24.27■■□□□ 1.48
TNFRSF1A-213ENST00000540022 TAF1LQ8IZX4 1826 aa24.26■■□□□ 1.47
TNFRSF1A-213ENST00000540022 MRPL50Q8N5N7 158 aaKnown RBP24.26■■□□□ 1.47
TNFRSF1A-213ENST00000540022 CHMP4AQ9BY43 222 aa24.26■■□□□ 1.47
TNFRSF1A-213ENST00000540022 ZNF827Q17R98 1081 aa24.25■■□□□ 1.47
TNFRSF1A-213ENST00000540022 CHPF2Q9P2E5 772 aa24.25■■□□□ 1.47
TNFRSF1A-213ENST00000540022 SLC4A2P04920 1241 aa24.25■■□□□ 1.47
TNFRSF1A-213ENST00000540022 LINC00116Q8NCU8 138 aa24.25■■□□□ 1.47
TNFRSF1A-213ENST00000540022 STK31Q9BXU1 1019 aa24.25■■□□□ 1.47
TNFRSF1A-213ENST00000540022 CYP19A1P11511 503 aaPredicted RBP24.24■■□□□ 1.47
TNFRSF1A-213ENST00000540022 BRPF1P55201 1214 aaPredicted RBP24.24■■□□□ 1.47
TNFRSF1A-213ENST00000540022 STARD3NLO95772 234 aa24.23■■□□□ 1.47
TNFRSF1A-213ENST00000540022 ANXA1P04083 346 aa24.23■■□□□ 1.47
TNFRSF1A-213ENST00000540022 A1BGP04217 495 aa24.23■■□□□ 1.47
TNFRSF1A-213ENST00000540022 PDIA6Q15084 440 aa24.23■■□□□ 1.47
TNFRSF1A-213ENST00000540022 PROSER3Q2NL68 480 aa24.23■■□□□ 1.47
TNFRSF1A-213ENST00000540022 SPON1Q9HCB6 807 aa24.23■■□□□ 1.47
TNFRSF1A-213ENST00000540022 DBF4Q9UBU7 674 aaPredicted RBP24.23■■□□□ 1.47
TNFRSF1A-213ENST00000540022 TJP1Q07157 1748 aa24.22■■□□□ 1.47
TNFRSF1A-213ENST00000540022 PIP4K2AP48426 406 aaPredicted RBP24.22■■□□□ 1.47
TNFRSF1A-213ENST00000540022 AKT1S1Q96B36 256 aa24.22■■□□□ 1.47
TNFRSF1A-213ENST00000540022 RNF123Q5XPI4 1314 aa24.22■■□□□ 1.47
TNFRSF1A-213ENST00000540022 G2E3Q7L622 706 aa24.21■■□□□ 1.47
TNFRSF1A-213ENST00000540022 DDX21Q9NR30 783 aaKnown RBP eCLIP24.21■■□□□ 1.47
TNFRSF1A-213ENST00000540022 NBPF26B4DH59 902 aa24.2■■□□□ 1.47
TNFRSF1A-213ENST00000540022 RRP1P56182 461 aaKnown RBP24.2■■□□□ 1.47
TNFRSF1A-213ENST00000540022 NBPF10Q6P3W6 841 aaKnown RBP24.2■■□□□ 1.47
TNFRSF1A-213ENST00000540022 NBPF15Q8N660 670 aa24.2■■□□□ 1.47
TNFRSF1A-213ENST00000540022 LAMB4A4D0S4 1761 aa24.2■■□□□ 1.46
TNFRSF1A-213ENST00000540022 ERBB4Q15303 1308 aa24.2■■□□□ 1.46
TNFRSF1A-213ENST00000540022 CICQ96RK0 1608 aaPredicted RBP24.2■■□□□ 1.46
TNFRSF1A-213ENST00000540022 PLIN1O60240 522 aa24.2■■□□□ 1.46
TNFRSF1A-213ENST00000540022 FRAT1Q92837 279 aaPredicted RBP24.2■■□□□ 1.46
TNFRSF1A-213ENST00000540022 NOB1Q9ULX3 412 aaKnown RBP24.2■■□□□ 1.46
TNFRSF1A-213ENST00000540022 ZNF831Q5JPB2 1677 aa24.19■■□□□ 1.46
TNFRSF1A-213ENST00000540022 ZBTB7AO95365 584 aa24.19■■□□□ 1.46
TNFRSF1A-213ENST00000540022 LRP10Q7Z4F1 713 aa24.19■■□□□ 1.46
TNFRSF1A-213ENST00000540022 PHAXQ9H814 394 aaKnown RBP24.19■■□□□ 1.46
TNFRSF1A-213ENST00000540022 KIF16BQ96L93 1317 aa24.18■■□□□ 1.46
TNFRSF1A-213ENST00000540022 MYL6BP14649 208 aa24.18■■□□□ 1.46
TNFRSF1A-213ENST00000540022 SMIM5Q71RC9 77 aa24.18■■□□□ 1.46
TNFRSF1A-213ENST00000540022 CRKLP46109 303 aaKnown RBP24.17■■□□□ 1.46
TNFRSF1A-213ENST00000540022 AMIGO3Q86WK7 504 aa24.17■■□□□ 1.46
TNFRSF1A-213ENST00000540022 HYPKQ9NX55 129 aa24.17■■□□□ 1.46
TNFRSF1A-213ENST00000540022 ZBTB1Q9Y2K1 713 aa24.17■■□□□ 1.46
TNFRSF1A-213ENST00000540022 INTS5Q6P9B9 1019 aaKnown RBP24.16■■□□□ 1.46
TNFRSF1A-213ENST00000540022 FLIIQ13045 1269 aa24.15■■□□□ 1.46
TNFRSF1A-213ENST00000540022 CCDC87Q9NVE4 849 aa24.15■■□□□ 1.46
TNFRSF1A-213ENST00000540022 CANXP27824 592 aaKnown RBP24.15■■□□□ 1.46
TNFRSF1A-213ENST00000540022 ZKSCAN2Q63HK3 967 aa24.15■■□□□ 1.46
TNFRSF1A-213ENST00000540022 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.15■■□□□ 1.46
TNFRSF1A-213ENST00000540022 TNNQ9UQP3 1299 aa24.15■■□□□ 1.46
TNFRSF1A-213ENST00000540022 ATF5Q9Y2D1 282 aaPredicted RBP24.15■■□□□ 1.46
TNFRSF1A-213ENST00000540022 C4BP0C0L5 1744 aa24.14■■□□□ 1.45
TNFRSF1A-213ENST00000540022 COL5A3P25940 1745 aaPredicted RBP24.14■■□□□ 1.45
TNFRSF1A-213ENST00000540022 PTGER2P43116 358 aa24.14■■□□□ 1.45
TNFRSF1A-213ENST00000540022 MTFR1LQ9H019 292 aa24.14■■□□□ 1.45
TNFRSF1A-213ENST00000540022 PNPLA7Q6ZV29 1317 aa24.14■■□□□ 1.45
TNFRSF1A-213ENST00000540022 COL24A1Q17RW2 1714 aa24.13■■□□□ 1.45
TNFRSF1A-213ENST00000540022 ATF7IPQ6VMQ6 1270 aa24.13■■□□□ 1.45
TNFRSF1A-213ENST00000540022 ARHGAP45Q92619 1136 aa24.13■■□□□ 1.45
TNFRSF1A-213ENST00000540022 CNTNAP4Q9C0A0 1308 aa24.13■■□□□ 1.45
TNFRSF1A-213ENST00000540022 IPO8O15397 1037 aaKnown RBP24.12■■□□□ 1.45
TNFRSF1A-213ENST00000540022 TRIM27P14373 513 aa24.12■■□□□ 1.45
TNFRSF1A-213ENST00000540022 COPS6Q7L5N1 327 aa24.12■■□□□ 1.45
TNFRSF1A-213ENST00000540022 XAGE3Q8WTP9 111 aa24.12■■□□□ 1.45
TNFRSF1A-213ENST00000540022 TFCP2L1Q9NZI6 479 aa24.12■■□□□ 1.45
TNFRSF1A-213ENST00000540022 PTPRCP08575 1304 aa24.12■■□□□ 1.45
TNFRSF1A-213ENST00000540022 AIMP1Q12904 312 aaKnown RBP24.11■■□□□ 1.45
TNFRSF1A-213ENST00000540022 FKBP5Q13451 457 aaPredicted RBP24.11■■□□□ 1.45
TNFRSF1A-213ENST00000540022 RC3H1Q5TC82 1133 aaKnown RBP24.11■■□□□ 1.45
TNFRSF1A-213ENST00000540022 PPP1R1BQ9UD71 204 aaPredicted RBP24.11■■□□□ 1.45
TNFRSF1A-213ENST00000540022 UBR3Q6ZT12 1888 aa24.11■■□□□ 1.45
TNFRSF1A-213ENST00000540022 C20orf194Q5TEA3 1177 aa24.1■■□□□ 1.45
TNFRSF1A-213ENST00000540022 SGIP1Q9BQI5 828 aa24.1■■□□□ 1.45
TNFRSF1A-213ENST00000540022 ZNF330Q9Y3S2 320 aaPredicted RBP24.1■■□□□ 1.45
TNFRSF1A-213ENST00000540022 GNPATO15228 680 aa24.1■■□□□ 1.45
TNFRSF1A-213ENST00000540022 IL6STP40189 918 aaPredicted RBP24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms