RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 SCHIP1Q9P0W5 487 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-213ENST00000539950 ATXN7L1Q9ULK2 861 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-213ENST00000539950 C2CD2LO14523 706 aa7.95□□□□□ -1.14
VPS13A-213ENST00000539950 GDF11O95390 407 aa7.95□□□□□ -1.14
VPS13A-213ENST00000539950 MAP2K3P46734 347 aa7.95□□□□□ -1.14
VPS13A-213ENST00000539950 TBCELQ5QJ74 424 aa7.95□□□□□ -1.14
VPS13A-213ENST00000539950 TRIM50Q86XT4 487 aa7.95□□□□□ -1.14
VPS13A-213ENST00000539950 TNS4Q8IZW8 715 aa7.95□□□□□ -1.14
VPS13A-213ENST00000539950 TMEM151AQ8N4L1 468 aa7.95□□□□□ -1.14
VPS13A-213ENST00000539950 GLMNQ92990 594 aa7.95□□□□□ -1.14
VPS13A-213ENST00000539950 KLRG1Q96E93 195 aa7.95□□□□□ -1.14
VPS13A-213ENST00000539950 OXCT2Q9BYC2 517 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-213ENST00000539950 ZCCHC2Q9C0B9 1178 aaKnown RBP7.95□□□□□ -1.14
VPS13A-213ENST00000539950 A0A1W2PNR3 127 aa7.94□□□□□ -1.14
VPS13A-213ENST00000539950 OIP5O43482 229 aa7.94□□□□□ -1.14
VPS13A-213ENST00000539950 FGFR3P22607 806 aa7.94□□□□□ -1.14
VPS13A-213ENST00000539950 FOXK2Q01167 660 aa7.94□□□□□ -1.14
VPS13A-213ENST00000539950 CTBSQ01459 385 aa7.94□□□□□ -1.14
VPS13A-213ENST00000539950 NBPF1Q3BBV0 1214 aa7.94□□□□□ -1.14
VPS13A-213ENST00000539950 ARSJQ5FYB0 599 aaPredicted RBP7.94□□□□□ -1.14
VPS13A-213ENST00000539950 C1orf229Q6ZS94 237 aaPredicted RBP7.94□□□□□ -1.14
VPS13A-213ENST00000539950 KCTD17Q8N5Z5 321 aa7.94□□□□□ -1.14
VPS13A-213ENST00000539950 TPCN2Q8NHX9 752 aa7.94□□□□□ -1.14
VPS13A-213ENST00000539950 ZDHHC1Q8WTX9 485 aa7.94□□□□□ -1.14
VPS13A-213ENST00000539950 ZDHHC3Q9NYG2 299 aa7.94□□□□□ -1.14
VPS13A-213ENST00000539950 HCN2Q9UL51 889 aa7.94□□□□□ -1.14
VPS13A-213ENST00000539950 TXLNAP40222 546 aa7.93□□□□□ -1.14
VPS13A-213ENST00000539950 CCDC102BQ68D86 513 aa7.93□□□□□ -1.14
VPS13A-213ENST00000539950 FIGNL1Q6PIW4 674 aa7.93□□□□□ -1.14
VPS13A-213ENST00000539950 NLRP8Q86W28 1048 aa7.93□□□□□ -1.14
VPS13A-213ENST00000539950 NEDD1Q8NHV4 660 aa7.93□□□□□ -1.14
VPS13A-213ENST00000539950 SCARF2Q96GP6 870 aaPredicted RBP7.93□□□□□ -1.14
VPS13A-213ENST00000539950 ZIC5Q96T25 663 aa7.93□□□□□ -1.14
VPS13A-213ENST00000539950 PCDHGC4Q9Y5F7 938 aa7.93□□□□□ -1.14
VPS13A-213ENST00000539950 CNTNAP5Q8WYK1 1306 aa7.93□□□□□ -1.14
VPS13A-213ENST00000539950 SHISA8B8ZZ34 492 aa7.92□□□□□ -1.14
VPS13A-213ENST00000539950 BMP4P12644 408 aa7.92□□□□□ -1.14
VPS13A-213ENST00000539950 TATP17735 454 aaPredicted RBP7.92□□□□□ -1.14
VPS13A-213ENST00000539950 ATP1A2P50993 1020 aa7.92□□□□□ -1.14
VPS13A-213ENST00000539950 SLC9A9Q8IVB4 645 aa7.92□□□□□ -1.14
VPS13A-213ENST00000539950 OGFOD1Q8N543 542 aa7.92□□□□□ -1.14
VPS13A-213ENST00000539950 L3MBTL2Q969R5 705 aa7.92□□□□□ -1.14
VPS13A-213ENST00000539950 LRRC4BQ9NT99 713 aa7.92□□□□□ -1.14
VPS13A-213ENST00000539950 MKRN1Q9UHC7 482 aaKnown RBP7.92□□□□□ -1.14
VPS13A-213ENST00000539950 DCDC2BA2VCK2 349 aa7.91□□□□□ -1.14
VPS13A-213ENST00000539950 ATXN7O15265 892 aaPredicted RBP7.91□□□□□ -1.14
VPS13A-213ENST00000539950 GALNT6Q8NCL4 622 aa7.91□□□□□ -1.14
VPS13A-213ENST00000539950 TFIP11Q9UBB9 837 aaKnown RBP7.91□□□□□ -1.14
VPS13A-213ENST00000539950 A6NJR5 290 aa7.9□□□□□ -1.14
VPS13A-213ENST00000539950 NOS2P35228 1153 aa7.9□□□□□ -1.14
VPS13A-213ENST00000539950 TNP2Q05952 138 aa7.9□□□□□ -1.14
VPS13A-213ENST00000539950 TEAD4Q15561 434 aa7.9□□□□□ -1.14
VPS13A-213ENST00000539950 SH3PXD2AQ5TCZ1 1133 aa7.9□□□□□ -1.14
VPS13A-213ENST00000539950 LARGE2Q8N3Y3 721 aa7.9□□□□□ -1.14
VPS13A-213ENST00000539950 ZNF594Q96JF6 807 aaPredicted RBP7.9□□□□□ -1.14
VPS13A-213ENST00000539950 PALM3A6NDB9 673 aaPredicted RBP7.89□□□□□ -1.15
VPS13A-213ENST00000539950 DKK1O94907 266 aa7.89□□□□□ -1.15
VPS13A-213ENST00000539950 MAPTP10636 758 aaKnown RBP7.89□□□□□ -1.15
VPS13A-213ENST00000539950 CD33P20138 364 aa7.89□□□□□ -1.15
VPS13A-213ENST00000539950 KANK3Q6NY19 840 aa7.89□□□□□ -1.15
VPS13A-213ENST00000539950 BICDL1Q6ZP65 573 aa7.89□□□□□ -1.15
VPS13A-213ENST00000539950 TSPAN10Q9H1Z9 355 aaPredicted RBP7.89□□□□□ -1.15
VPS13A-213ENST00000539950 GGA1Q9UJY5 639 aa7.89□□□□□ -1.15
VPS13A-213ENST00000539950 GDF2Q9UK05 429 aaPredicted RBP7.89□□□□□ -1.15
VPS13A-213ENST00000539950 MAFBQ9Y5Q3 323 aaPredicted RBP7.89□□□□□ -1.15
VPS13A-213ENST00000539950 SFI1A8K8P3 1242 aa7.88□□□□□ -1.15
VPS13A-213ENST00000539950 KHNYNO15037 678 aaKnown RBP7.88□□□□□ -1.15
VPS13A-213ENST00000539950 SNRPNP63162 240 aaKnown RBP7.88□□□□□ -1.15
VPS13A-213ENST00000539950 SIX5Q8N196 739 aa7.88□□□□□ -1.15
VPS13A-213ENST00000539950 GOLGA6L1Q8N7Z2 621 aa7.88□□□□□ -1.15
VPS13A-213ENST00000539950 TSEN2Q8NCE0 465 aaKnown RBP7.88□□□□□ -1.15
VPS13A-213ENST00000539950 EDARADDQ8WWZ3 215 aa7.88□□□□□ -1.15
VPS13A-213ENST00000539950 ZNF232Q9UNY5 417 aa7.88□□□□□ -1.15
VPS13A-213ENST00000539950 EML1O00423 815 aa7.87□□□□□ -1.15
VPS13A-213ENST00000539950 BEND7Q8N7W2 519 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-213ENST00000539950 C7orf43Q8WVR3 580 aa7.87□□□□□ -1.15
VPS13A-213ENST00000539950 CALR3Q96L12 384 aaKnown RBP7.87□□□□□ -1.15
VPS13A-213ENST00000539950 STRN4Q9NRL3 753 aa7.87□□□□□ -1.15
VPS13A-213ENST00000539950 GJA3Q9Y6H8 435 aa7.87□□□□□ -1.15
VPS13A-213ENST00000539950 DNMT3AQ9Y6K1 912 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-213ENST00000539950 SERTM1A2A2V5 107 aa7.86□□□□□ -1.15
VPS13A-213ENST00000539950 M0R2N6 131 aa7.86□□□□□ -1.15
VPS13A-213ENST00000539950 FAM157BP0CG42 384 aa7.86□□□□□ -1.15
VPS13A-213ENST00000539950 RASA1P20936 1047 aa7.86□□□□□ -1.15
VPS13A-213ENST00000539950 LRRC69Q6ZNQ3 347 aa7.86□□□□□ -1.15
VPS13A-213ENST00000539950 SLCO4C1Q6ZQN7 724 aa7.86□□□□□ -1.15
VPS13A-213ENST00000539950 PODNQ7Z5L7 613 aa7.86□□□□□ -1.15
VPS13A-213ENST00000539950 PPP1R12CQ9BZL4 782 aa7.86□□□□□ -1.15
VPS13A-213ENST00000539950 NEURL1BA8MQ27 555 aa7.85□□□□□ -1.15
VPS13A-213ENST00000539950 PHF20L1A8MW92 1017 aa7.85□□□□□ -1.15
VPS13A-213ENST00000539950 ARAFP10398 606 aa7.85□□□□□ -1.15
VPS13A-213ENST00000539950 FAM182BQ5T319 152 aa7.85□□□□□ -1.15
VPS13A-213ENST00000539950 SAMD5Q5TGI4 173 aa7.85□□□□□ -1.15
VPS13A-213ENST00000539950 KLF15Q9UIH9 416 aa7.85□□□□□ -1.15
VPS13A-213ENST00000539950 EFSO43281 561 aa7.84□□□□□ -1.15
VPS13A-213ENST00000539950 C21orf2O43822 256 aa7.84□□□□□ -1.15
VPS13A-213ENST00000539950 EPXP11678 715 aa7.84□□□□□ -1.15
VPS13A-213ENST00000539950 HOXB4P17483 251 aaPredicted RBP7.84□□□□□ -1.15
VPS13A-213ENST00000539950 PSMA6P60900 246 aaKnown RBP7.84□□□□□ -1.15
VPS13A-213ENST00000539950 CRTC2Q53ET0 693 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms