RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 LTV1Q96GA3 475 aaPredicted RBP13.5□□□□□ -0.25
SYNE1-237ENST00000539504 STAP2Q9UGK3 403 aa13.5□□□□□ -0.25
SYNE1-237ENST00000539504 SNX14Q9Y5W7 946 aa13.5□□□□□ -0.25
SYNE1-237ENST00000539504 SRGAP3O43295 1099 aa13.5□□□□□ -0.25
SYNE1-237ENST00000539504 KDM4AO75164 1064 aa13.5□□□□□ -0.25
SYNE1-237ENST00000539504 CCDC94Q9BW85 323 aaPredicted RBP13.5□□□□□ -0.25
SYNE1-237ENST00000539504 DIAPH3Q9NSV4 1193 aa13.5□□□□□ -0.25
SYNE1-237ENST00000539504 F13A1P00488 732 aa13.49□□□□□ -0.25
SYNE1-237ENST00000539504 CBX1P83916 185 aa13.49□□□□□ -0.25
SYNE1-237ENST00000539504 DNM1Q05193 864 aaKnown RBP13.49□□□□□ -0.25
SYNE1-237ENST00000539504 OSCARQ8IYS5 282 aa13.49□□□□□ -0.25
SYNE1-237ENST00000539504 RASEFQ8IZ41 740 aa13.49□□□□□ -0.25
SYNE1-237ENST00000539504 NEO1Q92859 1461 aa13.49□□□□□ -0.25
SYNE1-237ENST00000539504 CRB1P82279 1406 aa13.49□□□□□ -0.25
SYNE1-237ENST00000539504 SSH2Q76I76 1423 aa13.49□□□□□ -0.25
SYNE1-237ENST00000539504 ZHX1Q9UKY1 873 aaPredicted RBP13.49□□□□□ -0.25
SYNE1-237ENST00000539504 DLG5Q8TDM6 1919 aa13.48□□□□□ -0.25
SYNE1-237ENST00000539504 RHPN1Q8TCX5 695 aa13.48□□□□□ -0.25
SYNE1-237ENST00000539504 USP44Q9H0E7 712 aa13.48□□□□□ -0.25
SYNE1-237ENST00000539504 SOS1Q07889 1333 aaPredicted RBP13.48□□□□□ -0.25
SYNE1-237ENST00000539504 SGSM2O43147 1006 aa13.48□□□□□ -0.25
SYNE1-237ENST00000539504 GJB2P29033 226 aa13.48□□□□□ -0.25
SYNE1-237ENST00000539504 HDGFL1Q5TGJ6 251 aa13.48□□□□□ -0.25
SYNE1-237ENST00000539504 RUFY3Q7L099 469 aa13.48□□□□□ -0.25
SYNE1-237ENST00000539504 DRC7Q8IY82 874 aa13.48□□□□□ -0.25
SYNE1-237ENST00000539504 JAKMIP1Q96N16 626 aaKnown RBP13.48□□□□□ -0.25
SYNE1-237ENST00000539504 RAD50Q92878 1312 aa13.48□□□□□ -0.25
SYNE1-237ENST00000539504 SMAP1Q8IYB5 467 aaPredicted RBP13.48□□□□□ -0.25
SYNE1-237ENST00000539504 RPAP1Q9BWH6 1393 aaPredicted RBP13.47□□□□□ -0.25
SYNE1-237ENST00000539504 GOLGA6L4A6NEF3 574 aa13.47□□□□□ -0.25
SYNE1-237ENST00000539504 GOLGA6L6A8MZA4 724 aa13.47□□□□□ -0.25
SYNE1-237ENST00000539504 HDGFP51858 240 aaKnown RBP13.47□□□□□ -0.25
SYNE1-237ENST00000539504 PRPF40BQ6NWY9 871 aaKnown RBP13.47□□□□□ -0.25
SYNE1-237ENST00000539504 FERMT3Q86UX7 667 aa13.47□□□□□ -0.25
SYNE1-237ENST00000539504 NGDNQ8NEJ9 315 aaKnown RBP13.47□□□□□ -0.25
SYNE1-237ENST00000539504 PHAXQ9H814 394 aaKnown RBP13.47□□□□□ -0.25
SYNE1-237ENST00000539504 PDRG1Q9NUG6 133 aa13.47□□□□□ -0.25
SYNE1-237ENST00000539504 PPP4R3BQ5MIZ7 849 aa13.46□□□□□ -0.25
SYNE1-237ENST00000539504 EYA1Q99502 592 aa13.46□□□□□ -0.25
SYNE1-237ENST00000539504 RAB11FIP3O75154 756 aa13.46□□□□□ -0.25
SYNE1-237ENST00000539504 CAMK4Q16566 473 aa13.46□□□□□ -0.25
SYNE1-237ENST00000539504 TMEM87AQ8NBN3 555 aa13.46□□□□□ -0.25
SYNE1-237ENST00000539504 KIF1BPQ96EK5 621 aa13.46□□□□□ -0.25
SYNE1-237ENST00000539504 PREX1Q8TCU6 1659 aa13.46□□□□□ -0.25
SYNE1-237ENST00000539504 GNAT3A8MTJ3 354 aa13.46□□□□□ -0.26
SYNE1-237ENST00000539504 CCDC192P0DO97 292 aa13.46□□□□□ -0.26
SYNE1-237ENST00000539504 NUTM2GQ5VZR2 741 aa13.46□□□□□ -0.26
SYNE1-237ENST00000539504 LARGE1O95461 756 aa13.45□□□□□ -0.26
SYNE1-237ENST00000539504 NECAB1Q8N987 351 aa13.45□□□□□ -0.26
SYNE1-237ENST00000539504 PRDM4Q9UKN5 801 aa13.45□□□□□ -0.26
SYNE1-237ENST00000539504 RUFY2Q8WXA3 655 aa13.45□□□□□ -0.26
SYNE1-237ENST00000539504 LSG1Q9H089 658 aaKnown RBP13.45□□□□□ -0.26
SYNE1-237ENST00000539504 PYCARDQ9ULZ3 195 aa13.45□□□□□ -0.26
SYNE1-237ENST00000539504 CYP46A1Q9Y6A2 500 aa13.45□□□□□ -0.26
SYNE1-237ENST00000539504 SSH3Q8TE77 659 aa13.44□□□□□ -0.26
SYNE1-237ENST00000539504 AOX1Q06278 1338 aa13.44□□□□□ -0.26
SYNE1-237ENST00000539504 A2ML1A8K2U0 1454 aa13.44□□□□□ -0.26
SYNE1-237ENST00000539504 DLC1Q96QB1 1528 aa13.44□□□□□ -0.26
SYNE1-237ENST00000539504 C14orf37Q86TY3 774 aa13.44□□□□□ -0.26
SYNE1-237ENST00000539504 TTC14Q96N46 770 aa13.44□□□□□ -0.26
SYNE1-237ENST00000539504 SPDYE4A6NLX3 237 aa13.44□□□□□ -0.26
SYNE1-237ENST00000539504 LARP1BQ659C4 914 aaKnown RBP13.44□□□□□ -0.26
SYNE1-237ENST00000539504 ZNF710Q8N1W2 664 aa13.44□□□□□ -0.26
SYNE1-237ENST00000539504 PI4K2BQ8TCG2 481 aa13.44□□□□□ -0.26
SYNE1-237ENST00000539504 BCL2L12Q9HB09 334 aa13.44□□□□□ -0.26
SYNE1-237ENST00000539504 ZKSCAN1P17029 563 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-237ENST00000539504 PDCL2Q8N4E4 241 aa13.43□□□□□ -0.26
SYNE1-237ENST00000539504 PLEKHG5O94827 1062 aa13.43□□□□□ -0.26
SYNE1-237ENST00000539504 FAM173BQ6P4H8 233 aa13.43□□□□□ -0.26
SYNE1-237ENST00000539504 CKAP2LQ8IYA6 745 aa13.43□□□□□ -0.26
SYNE1-237ENST00000539504 MTMR6Q9Y217 621 aa13.43□□□□□ -0.26
SYNE1-237ENST00000539504 NBPF7P0C2Y1 421 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-237ENST00000539504 TAF7Q15545 349 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-237ENST00000539504 CLASRPQ8N2M8 674 aaKnown RBP13.43□□□□□ -0.26
SYNE1-237ENST00000539504 BCL11BQ9C0K0 894 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-237ENST00000539504 TPM3P06753 285 aa13.42□□□□□ -0.26
SYNE1-237ENST00000539504 RIOK3O14730 519 aaKnown RBP13.42□□□□□ -0.26
SYNE1-237ENST00000539504 EPB41L2O43491 1005 aaKnown RBP13.42□□□□□ -0.26
SYNE1-237ENST00000539504 ANXA1P04083 346 aa13.42□□□□□ -0.26
SYNE1-237ENST00000539504 IFIT2P09913 472 aaKnown RBP13.42□□□□□ -0.26
SYNE1-237ENST00000539504 NLRP6P59044 892 aa13.42□□□□□ -0.26
SYNE1-237ENST00000539504 ADCK5Q3MIX3 580 aa13.42□□□□□ -0.26
SYNE1-237ENST00000539504 NUP62CLQ9H1M0 184 aa13.42□□□□□ -0.26
SYNE1-237ENST00000539504 GLRX3O76003 335 aaKnown RBP13.42□□□□□ -0.26
SYNE1-237ENST00000539504 KRT85P78386 507 aa13.42□□□□□ -0.26
SYNE1-237ENST00000539504 PTH1RQ03431 593 aa13.42□□□□□ -0.26
SYNE1-237ENST00000539504 MAP3K11Q16584 847 aa13.42□□□□□ -0.26
SYNE1-237ENST00000539504 HYPKQ9NX55 129 aa13.42□□□□□ -0.26
SYNE1-237ENST00000539504 AP5Z1O43299 807 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 PTGS1P23219 599 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 HSP90AB4PQ58FF6 505 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 KIAA1524Q8TCG1 905 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 ZSCAN31Q96LW9 406 aaPredicted RBP13.41□□□□□ -0.26
SYNE1-237ENST00000539504 SPTLC3Q9NUV7 552 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 ARHGEF10O15013 1369 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 TCEANC2Q96MN5 208 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 PLPPR3Q6T4P5 718 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 LUZP1Q86V48 1076 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 USHBP1Q8N6Y0 703 aa13.41□□□□□ -0.26
SYNE1-237ENST00000539504 IL17REQ8NFR9 667 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms