RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 PRKRIP1Q9H875 184 aaPredicted RBP25.15■■□□□ 1.62
CLIP1-211ENST00000539080 ZPR1O75312 459 aa25.14■■□□□ 1.62
CLIP1-211ENST00000539080 DCTN1Q14203 1278 aa25.14■■□□□ 1.62
CLIP1-211ENST00000539080 TAF7Q15545 349 aaPredicted RBP25.13■■□□□ 1.61
CLIP1-211ENST00000539080 SRP68Q9UHB9 627 aaKnown RBP25.13■■□□□ 1.61
CLIP1-211ENST00000539080 CHD4Q14839 1912 aa25.13■■□□□ 1.61
CLIP1-211ENST00000539080 NARFQ9UHQ1 456 aa25.12■■□□□ 1.61
CLIP1-211ENST00000539080 PARP3Q9Y6F1 533 aa25.12■■□□□ 1.61
CLIP1-211ENST00000539080 KCNQ3O43525 872 aa25.11■■□□□ 1.61
CLIP1-211ENST00000539080 C10orf71Q711Q0 1435 aa25.11■■□□□ 1.61
CLIP1-211ENST00000539080 A0A087WZG4 1122 aa25.1■■□□□ 1.61
CLIP1-211ENST00000539080 GRIN3BO60391 1043 aa25.1■■□□□ 1.61
CLIP1-211ENST00000539080 CANXP27824 592 aaKnown RBP25.1■■□□□ 1.61
CLIP1-211ENST00000539080 FKBP8Q14318 412 aa25.1■■□□□ 1.61
CLIP1-211ENST00000539080 PELP1Q8IZL8 1130 aaKnown RBP25.1■■□□□ 1.61
CLIP1-211ENST00000539080 PNISRQ8TF01 805 aaKnown RBP25.1■■□□□ 1.61
CLIP1-211ENST00000539080 EIF5P55010 431 aaKnown RBP25.09■■□□□ 1.61
CLIP1-211ENST00000539080 USPL1Q5W0Q7 1092 aa25.09■■□□□ 1.61
CLIP1-211ENST00000539080 SNRPA1P09661 255 aaKnown RBP25.08■■□□□ 1.61
CLIP1-211ENST00000539080 IL6STP40189 918 aaPredicted RBP25.08■■□□□ 1.61
CLIP1-211ENST00000539080 TGFB2P61812 414 aa25.08■■□□□ 1.61
CLIP1-211ENST00000539080 KDM3BQ7LBC6 1761 aa25.08■■□□□ 1.6
CLIP1-211ENST00000539080 YBX3P16989 372 aaKnown RBP eCLIP25.07■■□□□ 1.6
CLIP1-211ENST00000539080 WDR43Q15061 677 aaKnown RBP eCLIP25.07■■□□□ 1.6
CLIP1-211ENST00000539080 KIAA1551Q9HCM1 1747 aa25.06■■□□□ 1.6
CLIP1-211ENST00000539080 TM4SF1P30408 202 aa25.06■■□□□ 1.6
CLIP1-211ENST00000539080 UTRNP46939 3433 aa25.05■■□□□ 1.6
CLIP1-211ENST00000539080 SCN7AQ01118 1682 aa25.04■■□□□ 1.6
CLIP1-211ENST00000539080 PXDNLA1KZ92 1463 aa25.04■■□□□ 1.6
CLIP1-211ENST00000539080 RIPK4P57078 832 aa25.04■■□□□ 1.6
CLIP1-211ENST00000539080 DDR1Q08345 913 aa25.04■■□□□ 1.6
CLIP1-211ENST00000539080 LMOD3Q0VAK6 560 aa25.04■■□□□ 1.6
CLIP1-211ENST00000539080 NPM2Q86SE8 214 aaKnown RBP25.04■■□□□ 1.6
CLIP1-211ENST00000539080 USP16Q9Y5T5 823 aa25.04■■□□□ 1.6
CLIP1-211ENST00000539080 LAMB4A4D0S4 1761 aa25.03■■□□□ 1.6
CLIP1-211ENST00000539080 ZNF316A6NFI3 1004 aaPredicted RBP25.03■■□□□ 1.6
CLIP1-211ENST00000539080 POLRMTO00411 1230 aaKnown RBP25.03■■□□□ 1.6
CLIP1-211ENST00000539080 A1BGP04217 495 aa25.03■■□□□ 1.6
CLIP1-211ENST00000539080 TMPOP42166 694 aaKnown RBP25.02■■□□□ 1.6
CLIP1-211ENST00000539080 RUNDC1Q96C34 613 aa25.02■■□□□ 1.6
CLIP1-211ENST00000539080 BCL2L12Q9HB09 334 aa25.02■■□□□ 1.6
CLIP1-211ENST00000539080 NRXN2Q9P2S2 1712 aa25.01■■□□□ 1.59
CLIP1-211ENST00000539080 N4BP2Q86UW6 1770 aaPredicted RBP25.01■■□□□ 1.59
CLIP1-211ENST00000539080 MIS18AQ9NYP9 233 aa25.01■■□□□ 1.59
CLIP1-211ENST00000539080 PRAMEF22A3QJZ6 481 aa25■■□□□ 1.59
CLIP1-211ENST00000539080 NFIXQ14938 502 aa25■■□□□ 1.59
CLIP1-211ENST00000539080 THUMPD2Q9BTF0 503 aaKnown RBP25■■□□□ 1.59
CLIP1-211ENST00000539080 ADAMTS8Q9UP79 889 aa25■■□□□ 1.59
CLIP1-211ENST00000539080 BABAM1Q9NWV8 329 aa24.99■■□□□ 1.59
CLIP1-211ENST00000539080 ZNF330Q9Y3S2 320 aaPredicted RBP24.99■■□□□ 1.59
CLIP1-211ENST00000539080 AFDNP55196 1824 aaKnown RBP24.98■■□□□ 1.59
CLIP1-211ENST00000539080 BCORQ6W2J9 1755 aa24.98■■□□□ 1.59
CLIP1-211ENST00000539080 EIF4A1P60842 406 aaKnown RBP24.97■■□□□ 1.59
CLIP1-211ENST00000539080 CCDC146Q8IYE0 955 aa24.97■■□□□ 1.59
CLIP1-211ENST00000539080 TBC1D2BQ9UPU7 963 aa24.97■■□□□ 1.59
CLIP1-211ENST00000539080 BRCA1P38398 1863 aaKnown RBP24.97■■□□□ 1.59
CLIP1-211ENST00000539080 GOLGB1Q14789 3259 aaKnown RBP24.97■■□□□ 1.59
CLIP1-211ENST00000539080 A0A0G2JLW4 131 aa24.96■■□□□ 1.59
CLIP1-211ENST00000539080 GIGYF1O75420 1035 aaPredicted RBP24.96■■□□□ 1.59
CLIP1-211ENST00000539080 CAMTA2O94983 1202 aa24.95■■□□□ 1.58
CLIP1-211ENST00000539080 DPEP1P16444 411 aa24.95■■□□□ 1.58
CLIP1-211ENST00000539080 DZIP3Q86Y13 1208 aaKnown RBP24.95■■□□□ 1.58
CLIP1-211ENST00000539080 RGL2O15211 777 aa24.94■■□□□ 1.58
CLIP1-211ENST00000539080 SERPINB2P05120 415 aa24.94■■□□□ 1.58
CLIP1-211ENST00000539080 TSPYL4Q9UJ04 414 aa24.94■■□□□ 1.58
CLIP1-211ENST00000539080 NBPF26B4DH59 902 aa24.92■■□□□ 1.58
CLIP1-211ENST00000539080 TBC1D9BQ66K14 1250 aa24.92■■□□□ 1.58
CLIP1-211ENST00000539080 NBPF10Q6P3W6 841 aaKnown RBP24.92■■□□□ 1.58
CLIP1-211ENST00000539080 CLEC4GQ6UXB4 293 aa24.92■■□□□ 1.58
CLIP1-211ENST00000539080 NBPF15Q8N660 670 aa24.92■■□□□ 1.58
CLIP1-211ENST00000539080 ZNF784Q8NCA9 323 aaPredicted RBP24.92■■□□□ 1.58
CLIP1-211ENST00000539080 RRP7AQ9Y3A4 280 aaKnown RBP24.92■■□□□ 1.58
CLIP1-211ENST00000539080 CARMIL3Q8ND23 1372 aa24.92■■□□□ 1.58
CLIP1-211ENST00000539080 KCNA3P22001 575 aa24.91■■□□□ 1.58
CLIP1-211ENST00000539080 PIP4K2AP48426 406 aaPredicted RBP24.91■■□□□ 1.58
CLIP1-211ENST00000539080 NEUROD2Q15784 382 aa24.91■■□□□ 1.58
CLIP1-211ENST00000539080 PIM2Q9P1W9 311 aa24.91■■□□□ 1.58
CLIP1-211ENST00000539080 WWC3Q9ULE0 1092 aa24.91■■□□□ 1.58
CLIP1-211ENST00000539080 BICDL1Q6ZP65 573 aa24.9■■□□□ 1.58
CLIP1-211ENST00000539080 TRIM35Q9UPQ4 493 aa24.9■■□□□ 1.58
CLIP1-211ENST00000539080 ZNF652Q9Y2D9 606 aa24.9■■□□□ 1.58
CLIP1-211ENST00000539080 ARFGEF1Q9Y6D6 1849 aa24.9■■□□□ 1.58
CLIP1-211ENST00000539080 BCS1LQ9Y276 419 aa24.89■■□□□ 1.58
CLIP1-211ENST00000539080 ERBB4Q15303 1308 aa24.88■■□□□ 1.57
CLIP1-211ENST00000539080 SETDB2Q96T68 719 aa24.88■■□□□ 1.57
CLIP1-211ENST00000539080 DLEC1Q9Y238 1755 aa24.88■■□□□ 1.57
CLIP1-211ENST00000539080 PDZRN3Q9UPQ7 1066 aa24.86■■□□□ 1.57
CLIP1-211ENST00000539080 CHL1O00533 1208 aa24.85■■□□□ 1.57
CLIP1-211ENST00000539080 ANP32CO43423 234 aa24.85■■□□□ 1.57
CLIP1-211ENST00000539080 CHRNA5P30532 468 aa24.85■■□□□ 1.57
CLIP1-211ENST00000539080 DALRD3Q5D0E6 543 aaKnown RBP24.85■■□□□ 1.57
CLIP1-211ENST00000539080 PRR5LQ6MZQ0 368 aa24.83■■□□□ 1.57
CLIP1-211ENST00000539080 BRIP1Q9BX63 1249 aa24.83■■□□□ 1.57
CLIP1-211ENST00000539080 ANKRD31Q8N7Z5 1873 aa24.83■■□□□ 1.56
CLIP1-211ENST00000539080 ERVV-1B6SEH8 477 aa24.82■■□□□ 1.56
CLIP1-211ENST00000539080 PDE6BP35913 854 aa24.82■■□□□ 1.56
CLIP1-211ENST00000539080 CNBD1Q8NA66 436 aa24.82■■□□□ 1.56
CLIP1-211ENST00000539080 ADCY9O60503 1353 aa24.81■■□□□ 1.56
CLIP1-211ENST00000539080 H0YIN7 160 aa24.81■■□□□ 1.56
CLIP1-211ENST00000539080 APAF1O14727 1248 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms