RNA–Protein interactions for RNA: ENST00000538886.5

GGA3-202, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene GGA3, Length 3,766 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-202ENST00000538886 CCDC87Q9NVE4 849 aa11.05□□□□□ -0.64
GGA3-202ENST00000538886 TRMT112Q9UI30 125 aaKnown RBP11.05□□□□□ -0.64
GGA3-202ENST00000538886 SETDB2Q96T68 719 aa11.04□□□□□ -0.64
GGA3-202ENST00000538886 DBF4Q9UBU7 674 aaPredicted RBP11.04□□□□□ -0.64
GGA3-202ENST00000538886 MED1Q15648 1581 aaPredicted RBP11.04□□□□□ -0.64
GGA3-202ENST00000538886 MEGF6O75095 1541 aa11.04□□□□□ -0.64
GGA3-202ENST00000538886 PI4KAP2A4QPH2 592 aa11.04□□□□□ -0.64
GGA3-202ENST00000538886 PI4KAP1Q8N8J0 262 aa11.04□□□□□ -0.64
GGA3-202ENST00000538886 PLEKHF1Q96S99 279 aa11.04□□□□□ -0.64
GGA3-202ENST00000538886 PHAXQ9H814 394 aaKnown RBP11.04□□□□□ -0.64
GGA3-202ENST00000538886 ZNF652Q9Y2D9 606 aa11.04□□□□□ -0.64
GGA3-202ENST00000538886 COG6Q9Y2V7 657 aa11.04□□□□□ -0.64
GGA3-202ENST00000538886 BRPF3Q9ULD4 1205 aa11.04□□□□□ -0.64
GGA3-202ENST00000538886 ITSN1Q15811 1721 aa11.04□□□□□ -0.64
GGA3-202ENST00000538886 USPL1Q5W0Q7 1092 aa11.03□□□□□ -0.64
GGA3-202ENST00000538886 KIF1AQ12756 1690 aa11.03□□□□□ -0.64
GGA3-202ENST00000538886 FBXW7Q969H0 707 aa11.03□□□□□ -0.64
GGA3-202ENST00000538886 NOB1Q9ULX3 412 aaKnown RBP11.03□□□□□ -0.64
GGA3-202ENST00000538886 HTATSF1O43719 755 aaKnown RBP11.03□□□□□ -0.64
GGA3-202ENST00000538886 FRAT2O75474 233 aaPredicted RBP11.03□□□□□ -0.64
GGA3-202ENST00000538886 UPF1Q92900 1129 aaKnown RBP eCLIP11.03□□□□□ -0.643e-6■■□□□ 13.9
GGA3-202ENST00000538886 CDK12Q9NYV4 1490 aaPredicted RBP11.03□□□□□ -0.64
GGA3-202ENST00000538886 ANKRD13DQ6ZTN6 518 aa11.02□□□□□ -0.64
GGA3-202ENST00000538886 USP32Q8NFA0 1604 aa11.02□□□□□ -0.64
GGA3-202ENST00000538886 PARP3Q9Y6F1 533 aa11.02□□□□□ -0.64
GGA3-202ENST00000538886 SETD1AO15047 1707 aaKnown RBP11.02□□□□□ -0.65
GGA3-202ENST00000538886 PANK1Q8TE04 598 aa11.02□□□□□ -0.65
GGA3-202ENST00000538886 SSH1Q8WYL5 1049 aa11.02□□□□□ -0.65
GGA3-202ENST00000538886 EIF4A1P60842 406 aaKnown RBP11.02□□□□□ -0.65
GGA3-202ENST00000538886 KNDC1Q76NI1 1749 aa11.02□□□□□ -0.65
GGA3-202ENST00000538886 ADGRB2O60241 1585 aa11.02□□□□□ -0.65
GGA3-202ENST00000538886 ZBED9Q6R2W3 1325 aa11.01□□□□□ -0.65
GGA3-202ENST00000538886 B4GALNT3Q6L9W6 998 aa11.01□□□□□ -0.65
GGA3-202ENST00000538886 NUTM1Q86Y26 1132 aa11.01□□□□□ -0.65
GGA3-202ENST00000538886 MAP3K2Q9Y2U5 619 aa11.01□□□□□ -0.65
GGA3-202ENST00000538886 ZKSCAN2Q63HK3 967 aa11.01□□□□□ -0.65
GGA3-202ENST00000538886 GIGYF1O75420 1035 aaPredicted RBP11.01□□□□□ -0.65
GGA3-202ENST00000538886 SLFN5Q08AF3 891 aa11.01□□□□□ -0.65
GGA3-202ENST00000538886 TTLL7Q6ZT98 887 aa11.01□□□□□ -0.65
GGA3-202ENST00000538886 C1orf115Q9H7X2 142 aa11□□□□□ -0.65
GGA3-202ENST00000538886 FLIIQ13045 1269 aa11□□□□□ -0.65
GGA3-202ENST00000538886 PROSER3Q2NL68 480 aa11□□□□□ -0.65
GGA3-202ENST00000538886 ITPK1Q13572 414 aa11□□□□□ -0.65
GGA3-202ENST00000538886 A0A087WZG4 1122 aa10.99□□□□□ -0.65
GGA3-202ENST00000538886 CHL1O00533 1208 aa10.99□□□□□ -0.65
GGA3-202ENST00000538886 GPR162Q16538 588 aa10.99□□□□□ -0.65
GGA3-202ENST00000538886 G2E3Q7L622 706 aa10.99□□□□□ -0.65
GGA3-202ENST00000538886 MMP10P09238 476 aa10.99□□□□□ -0.65
GGA3-202ENST00000538886 KCNJ4P48050 445 aa10.99□□□□□ -0.65
GGA3-202ENST00000538886 CWF19L2Q2TBE0 894 aaKnown RBP10.99□□□□□ -0.65
GGA3-202ENST00000538886 UBE3BQ7Z3V4 1068 aa10.99□□□□□ -0.65
GGA3-202ENST00000538886 FAM89AQ96GI7 184 aa10.99□□□□□ -0.65
GGA3-202ENST00000538886 HYPKQ9NX55 129 aa10.99□□□□□ -0.65
GGA3-202ENST00000538886 NCBP3Q53F19 620 aaKnown RBP10.98□□□□□ -0.65
GGA3-202ENST00000538886 GORABQ5T7V8 394 aa10.98□□□□□ -0.65
GGA3-202ENST00000538886 SIL1Q9H173 461 aa10.98□□□□□ -0.65
GGA3-202ENST00000538886 AHDC1Q5TGY3 1603 aaPredicted RBP10.98□□□□□ -0.65
GGA3-202ENST00000538886 HCLS1P14317 486 aaPredicted RBP10.98□□□□□ -0.65
GGA3-202ENST00000538886 LINC00116Q8NCU8 138 aa10.98□□□□□ -0.65
GGA3-202ENST00000538886 ARHGEF1Q92888 912 aaKnown RBP10.98□□□□□ -0.65
GGA3-202ENST00000538886 SRCIN1Q9C0H9 1055 aa10.98□□□□□ -0.65
GGA3-202ENST00000538886 SLIT2O94813 1529 aa10.98□□□□□ -0.65
GGA3-202ENST00000538886 SLC15A2Q16348 729 aa10.98□□□□□ -0.65
GGA3-202ENST00000538886 LRRC4BQ9NT99 713 aa10.98□□□□□ -0.65
GGA3-202ENST00000538886 HMGB2P26583 209 aaKnown RBP10.97□□□□□ -0.65
GGA3-202ENST00000538886 BCS1LQ9Y276 419 aa10.97□□□□□ -0.65
GGA3-202ENST00000538886 COL16A1Q07092 1604 aaPredicted RBP10.97□□□□□ -0.65
GGA3-202ENST00000538886 RPGRQ92834 1020 aaKnown RBP10.97□□□□□ -0.65
GGA3-202ENST00000538886 API5Q9BZZ5 524 aaKnown RBP10.97□□□□□ -0.65
GGA3-202ENST00000538886 PDGFDQ9GZP0 370 aaPredicted RBP10.97□□□□□ -0.65
GGA3-202ENST00000538886 UBTFL1P0CB47 393 aaPredicted RBP10.97□□□□□ -0.65
GGA3-202ENST00000538886 TPTE2Q6XPS3 522 aa10.97□□□□□ -0.65
GGA3-202ENST00000538886 DZIP1LQ8IYY4 767 aaKnown RBP10.97□□□□□ -0.65
GGA3-202ENST00000538886 CCDC125Q86Z20 511 aa10.96□□□□□ -0.65
GGA3-202ENST00000538886 CNBD1Q8NA66 436 aa10.96□□□□□ -0.65
GGA3-202ENST00000538886 MAP2P11137 1827 aaKnown RBP10.96□□□□□ -0.65
GGA3-202ENST00000538886 DNAAF4Q8WXU2 420 aa10.96□□□□□ -0.65
GGA3-202ENST00000538886 PIK3C2AO00443 1686 aa10.96□□□□□ -0.65
GGA3-202ENST00000538886 RGS12O14924 1447 aa10.96□□□□□ -0.66
GGA3-202ENST00000538886 MS4A1P11836 297 aa10.96□□□□□ -0.66
GGA3-202ENST00000538886 NAP1L5Q96NT1 182 aaPredicted RBP10.96□□□□□ -0.66
GGA3-202ENST00000538886 SPON1Q9HCB6 807 aa10.96□□□□□ -0.66
GGA3-202ENST00000538886 DDX21Q9NR30 783 aaKnown RBP eCLIP10.96□□□□□ -0.66
GGA3-202ENST00000538886 VAMP4O75379 141 aa10.95□□□□□ -0.66
GGA3-202ENST00000538886 ST5P78524 1137 aa10.95□□□□□ -0.66
GGA3-202ENST00000538886 SLC27A3Q5K4L6 730 aa10.95□□□□□ -0.66
GGA3-202ENST00000538886 MPHOSPH8Q99549 860 aa10.95□□□□□ -0.66
GGA3-202ENST00000538886 VPS37DQ86XT2 251 aa10.94□□□□□ -0.66
GGA3-202ENST00000538886 ATRNO75882 1429 aa10.94□□□□□ -0.66
GGA3-202ENST00000538886 PPP1R42Q7Z4L9 355 aa10.94□□□□□ -0.66
GGA3-202ENST00000538886 NLGN1Q8N2Q7 840 aa10.94□□□□□ -0.66
GGA3-202ENST00000538886 CNNM1Q9NRU3 951 aa10.94□□□□□ -0.66
GGA3-202ENST00000538886 KIF16BQ96L93 1317 aa10.94□□□□□ -0.66
GGA3-202ENST00000538886 XIRP1Q702N8 1843 aaKnown RBP10.94□□□□□ -0.66
GGA3-202ENST00000538886 ONECUT3O60422 494 aaPredicted RBP10.94□□□□□ -0.66
GGA3-202ENST00000538886 CYP19A1P11511 503 aaPredicted RBP10.94□□□□□ -0.66
GGA3-202ENST00000538886 FLAD1Q8NFF5 587 aa10.94□□□□□ -0.66
GGA3-202ENST00000538886 HEG1Q9ULI3 1381 aa10.93□□□□□ -0.66
GGA3-202ENST00000538886 SOCS7O14512 581 aa10.93□□□□□ -0.66
GGA3-202ENST00000538886 RPS6KA4O75676 772 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms