RNA–Protein interactions for RNA: ENST00000538862.6

CDCA3-207, Transcript of cell division cycle associated 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDCA3, Length 1,943 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-207ENST00000538862 CCDC125Q86Z20 511 aa17.98■□□□□ 0.47
CDCA3-207ENST00000538862 DISP2A7MBM2 1401 aa17.98■□□□□ 0.47
CDCA3-207ENST00000538862 GOLGA6L3A6NEY3 463 aa17.98■□□□□ 0.47
CDCA3-207ENST00000538862 FAM43AQ8N2R8 423 aa17.98■□□□□ 0.47
CDCA3-207ENST00000538862 PKNOX2Q96KN3 472 aa17.98■□□□□ 0.47
CDCA3-207ENST00000538862 RTL1A6NKG5 1358 aa17.97■□□□□ 0.47
CDCA3-207ENST00000538862 K7ELQ4 463 aaPredicted RBP17.97■□□□□ 0.47
CDCA3-207ENST00000538862 SF3B2Q13435 895 aaKnown RBP17.97■□□□□ 0.47
CDCA3-207ENST00000538862 FLT4P35916 1363 aa17.96■□□□□ 0.47
CDCA3-207ENST00000538862 KDRP35968 1356 aa17.96■□□□□ 0.47
CDCA3-207ENST00000538862 TRIM37O94972 964 aa17.96■□□□□ 0.47
CDCA3-207ENST00000538862 RAB3GAP1Q15042 981 aa17.96■□□□□ 0.47
CDCA3-207ENST00000538862 FAM208AQ9UK61 1670 aaKnown RBP17.96■□□□□ 0.47
CDCA3-207ENST00000538862 PTMSP20962 102 aa17.96■□□□□ 0.47
CDCA3-207ENST00000538862 FAM196AQ6ZSG2 479 aa17.96■□□□□ 0.47
CDCA3-207ENST00000538862 RTF1Q92541 710 aaKnown RBP17.95■□□□□ 0.46
CDCA3-207ENST00000538862 TNPO1Q92973 898 aaKnown RBP17.95■□□□□ 0.46
CDCA3-207ENST00000538862 GBP4Q96PP9 640 aa17.95■□□□□ 0.46
CDCA3-207ENST00000538862 TNS1Q9HBL0 1735 aaKnown RBP17.95■□□□□ 0.46
CDCA3-207ENST00000538862 SLC4A2P04920 1241 aa17.94■□□□□ 0.46
CDCA3-207ENST00000538862 ISY1Q9ULR0 285 aaKnown RBP17.94■□□□□ 0.46
CDCA3-207ENST00000538862 HTATSF1O43719 755 aaKnown RBP17.94■□□□□ 0.46
CDCA3-207ENST00000538862 RABEP1Q15276 862 aa17.94■□□□□ 0.46
CDCA3-207ENST00000538862 MTHFSDQ2M296 383 aaKnown RBP17.94■□□□□ 0.46
CDCA3-207ENST00000538862 USHBP1Q8N6Y0 703 aa17.94■□□□□ 0.46
CDCA3-207ENST00000538862 MARCH10Q8NA82 808 aaPredicted RBP17.94■□□□□ 0.46
CDCA3-207ENST00000538862 CDCA7Q9BWT1 371 aaPredicted RBP17.94■□□□□ 0.46
CDCA3-207ENST00000538862 HMMRO75330 724 aa17.93■□□□□ 0.46
CDCA3-207ENST00000538862 CD2BP2O95400 341 aaKnown RBP17.93■□□□□ 0.46
CDCA3-207ENST00000538862 HSP90AA1P07900 732 aaKnown RBP17.93■□□□□ 0.46
CDCA3-207ENST00000538862 IL2RBP14784 551 aa17.93■□□□□ 0.46
CDCA3-207ENST00000538862 GAS2L2Q8NHY3 880 aa17.93■□□□□ 0.46
CDCA3-207ENST00000538862 EXOC5O00471 708 aa17.92■□□□□ 0.46
CDCA3-207ENST00000538862 XRCC6P12956 609 aaKnown RBP eCLIP17.92■□□□□ 0.46
CDCA3-207ENST00000538862 CCT4P50991 539 aaKnown RBP17.92■□□□□ 0.46
CDCA3-207ENST00000538862 NBPF6Q5VWK0 638 aa17.92■□□□□ 0.46
CDCA3-207ENST00000538862 C16orf71Q8IYS4 520 aaPredicted RBP17.92■□□□□ 0.46
CDCA3-207ENST00000538862 NBPF4Q96M43 638 aa17.92■□□□□ 0.46
CDCA3-207ENST00000538862 MEIS3Q99687 375 aa17.92■□□□□ 0.46
CDCA3-207ENST00000538862 IGSF1Q8N6C5 1336 aa17.92■□□□□ 0.46
CDCA3-207ENST00000538862 SBF2Q86WG5 1849 aa17.92■□□□□ 0.46
CDCA3-207ENST00000538862 SKOR2Q2VWA4 1001 aaPredicted RBP17.92■□□□□ 0.46
CDCA3-207ENST00000538862 CASC1Q6TDU7 716 aa17.92■□□□□ 0.46
CDCA3-207ENST00000538862 TSPYL4Q9UJ04 414 aa17.92■□□□□ 0.46
CDCA3-207ENST00000538862 OVOS2A0A0G2JMS6 1433 aa17.91■□□□□ 0.46
CDCA3-207ENST00000538862 KAT6BQ8WYB5 2073 aa17.91■□□□□ 0.46
CDCA3-207ENST00000538862 USP26Q9BXU7 913 aa17.91■□□□□ 0.46
CDCA3-207ENST00000538862 TNS2Q63HR2 1409 aa17.91■□□□□ 0.46
CDCA3-207ENST00000538862 EN1Q05925 392 aaPredicted RBP17.9■□□□□ 0.46
CDCA3-207ENST00000538862 RBM42Q9BTD8 480 aaKnown RBP17.9■□□□□ 0.46
CDCA3-207ENST00000538862 GZF1Q9H116 711 aaPredicted RBP17.9■□□□□ 0.46
CDCA3-207ENST00000538862 BAG6P46379 1132 aa17.9■□□□□ 0.46
CDCA3-207ENST00000538862 CLEC17AQ6ZS10 378 aa17.9■□□□□ 0.46
CDCA3-207ENST00000538862 EYA1Q99502 592 aa17.9■□□□□ 0.46
CDCA3-207ENST00000538862 MRE11P49959 708 aa17.89■□□□□ 0.45
CDCA3-207ENST00000538862 PTF1AQ7RTS3 328 aa17.89■□□□□ 0.45
CDCA3-207ENST00000538862 MIS18AQ9NYP9 233 aa17.89■□□□□ 0.45
CDCA3-207ENST00000538862 SOS1Q07889 1333 aaPredicted RBP17.88■□□□□ 0.45
CDCA3-207ENST00000538862 SDSP20132 328 aa17.88■□□□□ 0.45
CDCA3-207ENST00000538862 OSBPL3Q9H4L5 887 aa17.88■□□□□ 0.45
CDCA3-207ENST00000538862 MEGF6O75095 1541 aa17.88■□□□□ 0.45
CDCA3-207ENST00000538862 CACNA1FO60840 1977 aa17.88■□□□□ 0.45
CDCA3-207ENST00000538862 APBA3O96018 575 aa17.88■□□□□ 0.45
CDCA3-207ENST00000538862 OTUD7AQ8TE49 926 aaPredicted RBP17.88■□□□□ 0.45
CDCA3-207ENST00000538862 G2E3Q7L622 706 aa17.87■□□□□ 0.45
CDCA3-207ENST00000538862 EZH2Q15910 746 aaKnown RBP17.86■□□□□ 0.45
CDCA3-207ENST00000538862 STK31Q9BXU1 1019 aa17.86■□□□□ 0.45
CDCA3-207ENST00000538862 BABAM1Q9NWV8 329 aa17.86■□□□□ 0.45
CDCA3-207ENST00000538862 REC8O95072 547 aa17.86■□□□□ 0.45
CDCA3-207ENST00000538862 GNAI2P04899 355 aa17.86■□□□□ 0.45
CDCA3-207ENST00000538862 SMARCA5O60264 1052 aaPredicted RBP17.85■□□□□ 0.45
CDCA3-207ENST00000538862 CCDC30Q5VVM6 783 aa17.85■□□□□ 0.45
CDCA3-207ENST00000538862 DDX54Q8TDD1 881 aaKnown RBP17.85■□□□□ 0.45
CDCA3-207ENST00000538862 SHANK3Q9BYB0 1731 aa17.84■□□□□ 0.45
CDCA3-207ENST00000538862 GNAT3A8MTJ3 354 aa17.84■□□□□ 0.45
CDCA3-207ENST00000538862 SLC4A10Q6U841 1118 aa17.84■□□□□ 0.45
CDCA3-207ENST00000538862 ACSBG1Q96GR2 724 aa17.84■□□□□ 0.45
CDCA3-207ENST00000538862 SRCAPQ6ZRS2 3230 aa17.84■□□□□ 0.45
CDCA3-207ENST00000538862 F6X3S4 739 aa17.84■□□□□ 0.45
CDCA3-207ENST00000538862 GOLGA6L22H0YM25 854 aa17.84■□□□□ 0.45
CDCA3-207ENST00000538862 KCNQ2O43526 872 aa17.83■□□□□ 0.44
CDCA3-207ENST00000538862 GNAI3P08754 354 aa17.83■□□□□ 0.44
CDCA3-207ENST00000538862 CAMKK2Q96RR4 588 aa17.83■□□□□ 0.44
CDCA3-207ENST00000538862 FOXD4L1Q9NU39 408 aa17.83■□□□□ 0.44
CDCA3-207ENST00000538862 ERC2O15083 957 aa17.82■□□□□ 0.44
CDCA3-207ENST00000538862 PDE1AP54750 535 aa17.82■□□□□ 0.44
CDCA3-207ENST00000538862 NUCB2P80303 420 aa17.82■□□□□ 0.44
CDCA3-207ENST00000538862 GRPEL1Q9HAV7 217 aa17.82■□□□□ 0.44
CDCA3-207ENST00000538862 APBB1O00213 710 aa17.82■□□□□ 0.44
CDCA3-207ENST00000538862 ST18O60284 1047 aa17.82■□□□□ 0.44
CDCA3-207ENST00000538862 FLIIQ13045 1269 aa17.82■□□□□ 0.44
CDCA3-207ENST00000538862 RAPGEF4Q8WZA2 1011 aa17.82■□□□□ 0.44
CDCA3-207ENST00000538862 CWC22Q9HCG8 908 aaKnown RBP17.82■□□□□ 0.44
CDCA3-207ENST00000538862 PODXL2Q9NZ53 605 aa17.82■□□□□ 0.44
CDCA3-207ENST00000538862 SSFA2P28290 1259 aa17.81■□□□□ 0.44
CDCA3-207ENST00000538862 ZCRB1Q8TBF4 217 aaKnown RBP17.81■□□□□ 0.44
CDCA3-207ENST00000538862 BCL9O00512 1426 aa17.81■□□□□ 0.44
CDCA3-207ENST00000538862 BCL11BQ9C0K0 894 aaPredicted RBP17.8■□□□□ 0.44
CDCA3-207ENST00000538862 N4BP2Q86UW6 1770 aaPredicted RBP17.8■□□□□ 0.44
CDCA3-207ENST00000538862 MAP3K5Q99683 1374 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 142 ms