RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 ERCC6LQ2NKX8 1250 aa14.65□□□□□ -0.06
USP3-203ENST00000538686 LRRC8AQ8IWT6 810 aa14.65□□□□□ -0.06
USP3-203ENST00000538686 CACTINQ8WUQ7 758 aaKnown RBP14.65□□□□□ -0.06
USP3-203ENST00000538686 RGS12O14924 1447 aa14.65□□□□□ -0.06
USP3-203ENST00000538686 CCDC189A1A4V9 331 aa14.65□□□□□ -0.06
USP3-203ENST00000538686 CASTP20810 708 aaKnown RBP14.65□□□□□ -0.06
USP3-203ENST00000538686 TDRD7Q8NHU6 1098 aaKnown RBP14.65□□□□□ -0.06
USP3-203ENST00000538686 PIK3R4Q99570 1358 aa14.64□□□□□ -0.07
USP3-203ENST00000538686 MAP3K11Q16584 847 aa14.64□□□□□ -0.07
USP3-203ENST00000538686 CCDC93Q567U6 631 aa14.64□□□□□ -0.07
USP3-203ENST00000538686 UBXN4Q92575 508 aa14.64□□□□□ -0.07
USP3-203ENST00000538686 SRCIN1Q9C0H9 1055 aa14.64□□□□□ -0.07
USP3-203ENST00000538686 C9orf84Q5VXU9 1444 aa14.64□□□□□ -0.07
USP3-203ENST00000538686 LMAN1P49257 510 aa14.64□□□□□ -0.07
USP3-203ENST00000538686 EXOSC9Q06265 439 aaKnown RBP14.64□□□□□ -0.07
USP3-203ENST00000538686 DHX8Q14562 1220 aaKnown RBP14.64□□□□□ -0.07
USP3-203ENST00000538686 CCDC158Q5M9N0 1113 aa14.64□□□□□ -0.07
USP3-203ENST00000538686 REXO1L1PQ8IX06 675 aa14.64□□□□□ -0.07
USP3-203ENST00000538686 CCAR2Q8N163 923 aaKnown RBP14.64□□□□□ -0.07
USP3-203ENST00000538686 BSDC1Q9NW68 430 aaPredicted RBP14.64□□□□□ -0.07
USP3-203ENST00000538686 RAD54L2Q9Y4B4 1467 aa14.63□□□□□ -0.07
USP3-203ENST00000538686 CADPSQ9ULU8 1353 aa14.63□□□□□ -0.07
USP3-203ENST00000538686 TICAM2Q86XR7 235 aa14.63□□□□□ -0.07
USP3-203ENST00000538686 CFAP53Q96M91 514 aa14.63□□□□□ -0.07
USP3-203ENST00000538686 ZSCAN16Q9H4T2 348 aaPredicted RBP14.63□□□□□ -0.07
USP3-203ENST00000538686 ORC3Q9UBD5 711 aaPredicted RBP14.63□□□□□ -0.07
USP3-203ENST00000538686 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.63□□□□□ -0.07
USP3-203ENST00000538686 ZBTB7BO15156 539 aaPredicted RBP14.62□□□□□ -0.07
USP3-203ENST00000538686 ZSCAN22P10073 491 aaPredicted RBP14.62□□□□□ -0.07
USP3-203ENST00000538686 SSR1P43307 286 aaKnown RBP14.62□□□□□ -0.07
USP3-203ENST00000538686 TTC37Q6PGP7 1564 aa14.62□□□□□ -0.07
USP3-203ENST00000538686 IL17RAQ96F46 866 aa14.62□□□□□ -0.07
USP3-203ENST00000538686 ADAM21Q9UKJ8 722 aa14.62□□□□□ -0.07
USP3-203ENST00000538686 CNPY2Q9Y2B0 182 aa14.62□□□□□ -0.07
USP3-203ENST00000538686 EXOC6BQ9Y2D4 811 aa14.62□□□□□ -0.07
USP3-203ENST00000538686 TCHHQ07283 1943 aa14.62□□□□□ -0.07
USP3-203ENST00000538686 ERCC6Q03468 1493 aa14.62□□□□□ -0.07
USP3-203ENST00000538686 GPATCH8Q9UKJ3 1502 aaKnown RBP14.62□□□□□ -0.07
USP3-203ENST00000538686 TYRO3Q06418 890 aa14.62□□□□□ -0.07
USP3-203ENST00000538686 TBC1D22AQ8WUA7 517 aa14.62□□□□□ -0.07
USP3-203ENST00000538686 NRBP1Q9UHY1 535 aa14.62□□□□□ -0.07
USP3-203ENST00000538686 SKILP12757 684 aa14.61□□□□□ -0.07
USP3-203ENST00000538686 RGL3Q3MIN7 710 aa14.61□□□□□ -0.07
USP3-203ENST00000538686 SARM1Q6SZW1 724 aa14.61□□□□□ -0.07
USP3-203ENST00000538686 DNAAF4Q8WXU2 420 aa14.61□□□□□ -0.07
USP3-203ENST00000538686 ARHGAP45Q92619 1136 aa14.61□□□□□ -0.07
USP3-203ENST00000538686 MRFAP1L1Q96HT8 127 aa14.61□□□□□ -0.07
USP3-203ENST00000538686 MRVI1Q9Y6F6 885 aa14.61□□□□□ -0.07
USP3-203ENST00000538686 TROQ12816 1431 aaPredicted RBP14.61□□□□□ -0.07
USP3-203ENST00000538686 KCNJ6P48051 423 aa14.61□□□□□ -0.07
USP3-203ENST00000538686 SNW1Q13573 536 aaKnown RBP14.61□□□□□ -0.07
USP3-203ENST00000538686 E2F4Q16254 413 aa14.61□□□□□ -0.07
USP3-203ENST00000538686 PLCD4Q9BRC7 762 aa14.61□□□□□ -0.07
USP3-203ENST00000538686 ZNF518AQ6AHZ1 1483 aa14.6□□□□□ -0.07
USP3-203ENST00000538686 A0A087WUV0 522 aaPredicted RBP14.6□□□□□ -0.07
USP3-203ENST00000538686 EFCAB8A8MWE9 144 aa14.6□□□□□ -0.07
USP3-203ENST00000538686 LIG1P18858 919 aa14.6□□□□□ -0.07
USP3-203ENST00000538686 RNF217Q8TC41 542 aa14.6□□□□□ -0.07
USP3-203ENST00000538686 STAG1Q8WVM7 1258 aa14.6□□□□□ -0.07
USP3-203ENST00000538686 SGSM2O43147 1006 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 CCP110O43303 1012 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 GSDMDP57764 484 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 JAKMIP3Q5VZ66 844 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 TMED8Q6PL24 325 aaPredicted RBP14.59□□□□□ -0.07
USP3-203ENST00000538686 LUZP1Q86V48 1076 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 ERC1Q8IUD2 1116 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 MSL3Q8N5Y2 521 aaKnown RBP14.59□□□□□ -0.07
USP3-203ENST00000538686 JMYQ8N9B5 988 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 NUP62CLQ9H1M0 184 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 CBX8Q9HC52 389 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 NPHP1O15259 732 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 TBC1D8O95759 1140 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 EIF5P55010 431 aaKnown RBP14.59□□□□□ -0.07
USP3-203ENST00000538686 TADA2BQ86TJ2 420 aa14.59□□□□□ -0.07
USP3-203ENST00000538686 IQGAP2Q13576 1575 aa14.58□□□□□ -0.07
USP3-203ENST00000538686 PSDA5PKW4 1024 aaPredicted RBP14.58□□□□□ -0.08
USP3-203ENST00000538686 USP27XA6NNY8 438 aa14.58□□□□□ -0.08
USP3-203ENST00000538686 C21orf2O43822 256 aa14.58□□□□□ -0.08
USP3-203ENST00000538686 SDSP20132 328 aa14.58□□□□□ -0.08
USP3-203ENST00000538686 NBPF9Q3BBW0 867 aa14.58□□□□□ -0.08
USP3-203ENST00000538686 C11orf91Q3C1V1 193 aa14.58□□□□□ -0.08
USP3-203ENST00000538686 SGSM3Q96HU1 749 aa14.58□□□□□ -0.08
USP3-203ENST00000538686 ARFGAP3Q9NP61 516 aa14.58□□□□□ -0.08
USP3-203ENST00000538686 KIF24Q5T7B8 1368 aa14.58□□□□□ -0.08
USP3-203ENST00000538686 PTCH1Q13635 1447 aa14.58□□□□□ -0.08
USP3-203ENST00000538686 SSH2Q76I76 1423 aa14.58□□□□□ -0.08
USP3-203ENST00000538686 MADDQ8WXG6 1647 aa14.58□□□□□ -0.08
USP3-203ENST00000538686 EPB41L2O43491 1005 aaKnown RBP14.57□□□□□ -0.08
USP3-203ENST00000538686 NRDCO43847 1150 aa14.57□□□□□ -0.08
USP3-203ENST00000538686 SMC2O95347 1197 aa14.57□□□□□ -0.08
USP3-203ENST00000538686 F13A1P00488 732 aa14.57□□□□□ -0.08
USP3-203ENST00000538686 CC2D1AQ6P1N0 951 aaPredicted RBP14.57□□□□□ -0.08
USP3-203ENST00000538686 A1CFQ9NQ94 594 aaKnown RBP14.57□□□□□ -0.08
USP3-203ENST00000538686 PHLPP2Q6ZVD8 1323 aa14.57□□□□□ -0.08
USP3-203ENST00000538686 CDC42BPAQ5VT25 1732 aa14.57□□□□□ -0.08
USP3-203ENST00000538686 PLA2R1Q13018 1463 aa14.57□□□□□ -0.08
USP3-203ENST00000538686 FAM135BQ49AJ0 1406 aa14.57□□□□□ -0.08
USP3-203ENST00000538686 ERCC3P19447 782 aa14.57□□□□□ -0.08
USP3-203ENST00000538686 TRHP20396 242 aaPredicted RBP14.57□□□□□ -0.08
USP3-203ENST00000538686 FOXD4L6Q3SYB3 417 aaPredicted RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms