RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 CTAGE5O15320 804 aa11.53□□□□□ -0.56
COL4A6-208ENST00000538570 USO1O60763 962 aaKnown RBP11.53□□□□□ -0.56
COL4A6-208ENST00000538570 PAFAH1B1P43034 410 aa11.52□□□□□ -0.56
COL4A6-208ENST00000538570 TMEM57Q8N5G2 664 aa11.52□□□□□ -0.56
COL4A6-208ENST00000538570 SH2B1Q9NRF2 756 aaPredicted RBP11.52□□□□□ -0.56
COL4A6-208ENST00000538570 CC2D2AQ9P2K1 1620 aa11.52□□□□□ -0.56
COL4A6-208ENST00000538570 GSTTP1A0A1W2PQM5 241 aa11.52□□□□□ -0.56
COL4A6-208ENST00000538570 GLRX3O76003 335 aaKnown RBP11.52□□□□□ -0.57
COL4A6-208ENST00000538570 LMAN1P49257 510 aa11.52□□□□□ -0.57
COL4A6-208ENST00000538570 WDR66Q8TBY9 1149 aa11.52□□□□□ -0.57
COL4A6-208ENST00000538570 MX1P20591 662 aa11.52□□□□□ -0.57
COL4A6-208ENST00000538570 PRPF40BQ6NWY9 871 aaKnown RBP11.52□□□□□ -0.57
COL4A6-208ENST00000538570 CTR9Q6PD62 1173 aa11.52□□□□□ -0.57
COL4A6-208ENST00000538570 AKAP2Q9Y2D5 859 aa11.52□□□□□ -0.57
COL4A6-208ENST00000538570 EHBP1L1Q8N3D4 1523 aa11.52□□□□□ -0.57
COL4A6-208ENST00000538570 CCDC196A0A1B0GTZ2 297 aa11.52□□□□□ -0.57
COL4A6-208ENST00000538570 POTEB2H3BUK9 544 aa11.52□□□□□ -0.57
COL4A6-208ENST00000538570 FCHSD2O94868 740 aa11.52□□□□□ -0.57
COL4A6-208ENST00000538570 CLCN1P35523 988 aa11.52□□□□□ -0.57
COL4A6-208ENST00000538570 PPP1R1BQ9UD71 204 aaPredicted RBP11.52□□□□□ -0.57
COL4A6-208ENST00000538570 RTEL1-TNFRSF6BF6WH68 1400 aa11.51□□□□□ -0.57
COL4A6-208ENST00000538570 C9orf84Q5VXU9 1444 aa11.51□□□□□ -0.57
COL4A6-208ENST00000538570 NEMFO60524 1076 aa11.51□□□□□ -0.57
COL4A6-208ENST00000538570 C8orf76Q96K31 380 aa11.51□□□□□ -0.57
COL4A6-208ENST00000538570 NUP88Q99567 741 aaPredicted RBP11.51□□□□□ -0.57
COL4A6-208ENST00000538570 YEATS4O95619 227 aa11.51□□□□□ -0.57
COL4A6-208ENST00000538570 DZIP1Q86YF9 867 aaKnown RBP11.51□□□□□ -0.57
COL4A6-208ENST00000538570 MCM5P33992 734 aa11.51□□□□□ -0.57
COL4A6-208ENST00000538570 NFE2L2Q16236 605 aa11.51□□□□□ -0.57
COL4A6-208ENST00000538570 METTL24Q5JXM2 366 aa11.51□□□□□ -0.57
COL4A6-208ENST00000538570 EXOC6BQ9Y2D4 811 aa11.51□□□□□ -0.57
COL4A6-208ENST00000538570 TTC31Q49AM3 519 aaPredicted RBP11.5□□□□□ -0.57
COL4A6-208ENST00000538570 SMAP1Q8IYB5 467 aaPredicted RBP11.5□□□□□ -0.57
COL4A6-208ENST00000538570 PPP4R3AQ6IN85 833 aa11.5□□□□□ -0.57
COL4A6-208ENST00000538570 LARP1Q6PKG0 1096 aaKnown RBP11.5□□□□□ -0.57
COL4A6-208ENST00000538570 BMS1Q14692 1282 aaKnown RBP11.5□□□□□ -0.57
COL4A6-208ENST00000538570 HOOK3Q86VS8 718 aa11.5□□□□□ -0.57
COL4A6-208ENST00000538570 PRIMPOLQ96LW4 560 aa11.5□□□□□ -0.57
COL4A6-208ENST00000538570 KIAA1107Q9UPP5 1409 aa11.5□□□□□ -0.57
COL4A6-208ENST00000538570 LIG1P18858 919 aa11.5□□□□□ -0.57
COL4A6-208ENST00000538570 RAB34Q9BZG1 259 aa11.5□□□□□ -0.57
COL4A6-208ENST00000538570 ABCF2Q9UG63 623 aa11.5□□□□□ -0.57
COL4A6-208ENST00000538570 SLFN5Q08AF3 891 aa11.5□□□□□ -0.57
COL4A6-208ENST00000538570 KRT222Q8N1A0 295 aa11.5□□□□□ -0.57
COL4A6-208ENST00000538570 CTNNBL1Q8WYA6 563 aaPredicted RBP11.5□□□□□ -0.57
COL4A6-208ENST00000538570 CEP63Q96MT8 703 aa11.5□□□□□ -0.57
COL4A6-208ENST00000538570 ZBTB12Q9Y330 459 aaPredicted RBP11.5□□□□□ -0.57
COL4A6-208ENST00000538570 SNAPC4Q5SXM2 1469 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 GNAT3A8MTJ3 354 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 GSDMDP57764 484 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 NAA15Q9BXJ9 866 aaKnown RBP11.49□□□□□ -0.57
COL4A6-208ENST00000538570 UBA5Q9GZZ9 404 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 TAOK3Q9H2K8 898 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 TMOD2Q9NZR1 351 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 C16orf45Q96MC5 204 aaPredicted RBP11.49□□□□□ -0.57
COL4A6-208ENST00000538570 KIF20AO95235 890 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 POLR3DP05423 398 aaPredicted RBP11.49□□□□□ -0.57
COL4A6-208ENST00000538570 UBE4AQ14139 1066 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 TMEM266Q2M3C6 531 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 CCDC175P0C221 793 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 ALS2CR12Q96Q35 445 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 TDRD12Q587J7 1177 aaKnown RBP11.49□□□□□ -0.57
COL4A6-208ENST00000538570 CNNM3Q8NE01 707 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.49□□□□□ -0.57
COL4A6-208ENST00000538570 MKNK2Q9HBH9 465 aa11.49□□□□□ -0.57
COL4A6-208ENST00000538570 MINDY4BA8MYZ0 360 aa11.48□□□□□ -0.57
COL4A6-208ENST00000538570 CCDC150Q8NCX0 1101 aa11.48□□□□□ -0.57
COL4A6-208ENST00000538570 TMPOP42166 694 aaKnown RBP11.48□□□□□ -0.57
COL4A6-208ENST00000538570 RRS1Q15050 365 aaKnown RBP11.48□□□□□ -0.57
COL4A6-208ENST00000538570 CTCFLQ8NI51 663 aaPredicted RBP11.48□□□□□ -0.57
COL4A6-208ENST00000538570 SMARCC1Q92922 1105 aaPredicted RBP11.48□□□□□ -0.57
COL4A6-208ENST00000538570 NAPBQ9H115 298 aa11.48□□□□□ -0.57
COL4A6-208ENST00000538570 DNA2P51530 1060 aa11.48□□□□□ -0.57
COL4A6-208ENST00000538570 CCDC85AQ96PX6 553 aaPredicted RBP11.48□□□□□ -0.57
COL4A6-208ENST00000538570 TRMT1Q9NXH9 659 aaKnown RBP11.48□□□□□ -0.57
COL4A6-208ENST00000538570 ATAD2Q6PL18 1390 aa11.48□□□□□ -0.57
COL4A6-208ENST00000538570 SSRP1Q08945 709 aaKnown RBP11.48□□□□□ -0.57
COL4A6-208ENST00000538570 SF3B2Q13435 895 aaKnown RBP11.48□□□□□ -0.57
COL4A6-208ENST00000538570 SPECC1Q5M775 1068 aa11.48□□□□□ -0.57
COL4A6-208ENST00000538570 GIGYF2Q6Y7W6 1299 aaKnown RBP11.48□□□□□ -0.57
COL4A6-208ENST00000538570 PPM1EQ8WY54 764 aa11.48□□□□□ -0.57
COL4A6-208ENST00000538570 DDX19AQ9NUU7 478 aaKnown RBP11.48□□□□□ -0.57
COL4A6-208ENST00000538570 SMARCA5O60264 1052 aaPredicted RBP11.48□□□□□ -0.57
COL4A6-208ENST00000538570 DNMBPQ6XZF7 1577 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 IFIT1P09914 478 aaKnown RBP11.47□□□□□ -0.57
COL4A6-208ENST00000538570 CAVIN4Q5BKX8 364 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 SLC12A7Q9Y666 1083 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 CPLX3Q8WVH0 158 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 STARD3NLO95772 234 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 GUCY1B3Q02153 619 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 BOLA2Q9H3K6 86 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 TMX1Q9H3N1 280 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 SLC52A1Q9NWF4 448 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 USP25Q9UHP3 1055 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 GOLGA6L9A6NEM1 432 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 SEPT6Q14141 434 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 HLTFQ14527 1009 aaKnown RBP eCLIP11.47□□□□□ -0.57
COL4A6-208ENST00000538570 STX1AQ16623 288 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 DUSP27Q5VZP5 1158 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 SPATA24Q86W54 205 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms