RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 NECTIN2Q92692 538 aa17.87■□□□□ 0.45
SYNE1-236ENST00000537750 STAP2Q9UGK3 403 aa17.87■□□□□ 0.45
SYNE1-236ENST00000537750 MLH3Q9UHC1 1453 aa17.87■□□□□ 0.45
SYNE1-236ENST00000537750 GOLGA6L6A8MZA4 724 aa17.87■□□□□ 0.45
SYNE1-236ENST00000537750 EIF4A2Q14240 407 aaKnown RBP17.87■□□□□ 0.45
SYNE1-236ENST00000537750 CCDC186Q7Z3E2 898 aa17.87■□□□□ 0.45
SYNE1-236ENST00000537750 CCDC83Q8IWF9 413 aa17.87■□□□□ 0.45
SYNE1-236ENST00000537750 LIMCH1Q9UPQ0 1083 aa17.87■□□□□ 0.45
SYNE1-236ENST00000537750 FOXO3O43524 673 aa17.86■□□□□ 0.45
SYNE1-236ENST00000537750 TPM3P06753 285 aa17.86■□□□□ 0.45
SYNE1-236ENST00000537750 CCDC192P0DO97 292 aa17.86■□□□□ 0.45
SYNE1-236ENST00000537750 GJB2P29033 226 aa17.86■□□□□ 0.45
SYNE1-236ENST00000537750 ATP8B2P98198 1209 aa17.86■□□□□ 0.45
SYNE1-236ENST00000537750 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.86■□□□□ 0.45
SYNE1-236ENST00000537750 MTMR6Q9Y217 621 aa17.85■□□□□ 0.45
SYNE1-236ENST00000537750 LRRFIP2Q9Y608 721 aaKnown RBP17.85■□□□□ 0.45
SYNE1-236ENST00000537750 VPS37CA5D8V6 355 aaPredicted RBP17.85■□□□□ 0.45
SYNE1-236ENST00000537750 FGD1P98174 961 aa17.85■□□□□ 0.45
SYNE1-236ENST00000537750 DDX54Q8TDD1 881 aaKnown RBP17.85■□□□□ 0.45
SYNE1-236ENST00000537750 OGFRQ9NZT2 677 aa17.85■□□□□ 0.45
SYNE1-236ENST00000537750 SPG7Q9UQ90 795 aa17.85■□□□□ 0.45
SYNE1-236ENST00000537750 ATP6V1DQ9Y5K8 247 aa17.85■□□□□ 0.45
SYNE1-236ENST00000537750 RAPGEF3O95398 923 aa17.85■□□□□ 0.45
SYNE1-236ENST00000537750 DRC7Q8IY82 874 aa17.85■□□□□ 0.45
SYNE1-236ENST00000537750 FEZ1Q99689 392 aa17.85■□□□□ 0.45
SYNE1-236ENST00000537750 MYO5BQ9ULV0 1848 aa17.84■□□□□ 0.45
SYNE1-236ENST00000537750 FAM173BQ6P4H8 233 aa17.84■□□□□ 0.45
SYNE1-236ENST00000537750 CGNQ9P2M7 1197 aaKnown RBP17.84■□□□□ 0.45
SYNE1-236ENST00000537750 CTNNA3Q9UI47 895 aa17.84■□□□□ 0.45
SYNE1-236ENST00000537750 TSPYL4Q9UJ04 414 aa17.84■□□□□ 0.45
SYNE1-236ENST00000537750 RAD50Q92878 1312 aa17.84■□□□□ 0.45
SYNE1-236ENST00000537750 SGSM2O43147 1006 aa17.84■□□□□ 0.45
SYNE1-236ENST00000537750 CKAP2LQ8IYA6 745 aa17.84■□□□□ 0.45
SYNE1-236ENST00000537750 AATKQ6ZMQ8 1374 aa17.83■□□□□ 0.45
SYNE1-236ENST00000537750 ATP7BP35670 1465 aa17.83■□□□□ 0.45
SYNE1-236ENST00000537750 CASTP20810 708 aaKnown RBP17.83■□□□□ 0.45
SYNE1-236ENST00000537750 LIG1P18858 919 aa17.83■□□□□ 0.44
SYNE1-236ENST00000537750 FAM200AQ8TCP9 573 aa17.83■□□□□ 0.44
SYNE1-236ENST00000537750 LSG1Q9H089 658 aaKnown RBP17.83■□□□□ 0.44
SYNE1-236ENST00000537750 MRVI1Q9Y6F6 885 aa17.83■□□□□ 0.44
SYNE1-236ENST00000537750 TUBGCP6Q96RT7 1819 aa17.82■□□□□ 0.44
SYNE1-236ENST00000537750 EDC4Q6P2E9 1401 aaKnown RBP17.82■□□□□ 0.44
SYNE1-236ENST00000537750 TNNT1P13805 278 aa17.82■□□□□ 0.44
SYNE1-236ENST00000537750 FBXO31Q5XUX0 539 aaPredicted RBP17.82■□□□□ 0.44
SYNE1-236ENST00000537750 CWC27Q6UX04 472 aaKnown RBP17.82■□□□□ 0.44
SYNE1-236ENST00000537750 FERMT3Q86UX7 667 aa17.82■□□□□ 0.44
SYNE1-236ENST00000537750 BBXQ8WY36 941 aaPredicted RBP17.82■□□□□ 0.44
SYNE1-236ENST00000537750 GNAI3P08754 354 aa17.81■□□□□ 0.44
SYNE1-236ENST00000537750 TYRO3Q06418 890 aa17.81■□□□□ 0.44
SYNE1-236ENST00000537750 TTC6Q86TZ1 520 aa17.81■□□□□ 0.44
SYNE1-236ENST00000537750 NECAB1Q8N987 351 aa17.81■□□□□ 0.44
SYNE1-236ENST00000537750 CPS1P31327 1500 aa17.81■□□□□ 0.44
SYNE1-236ENST00000537750 SOX12O15370 315 aa17.81■□□□□ 0.44
SYNE1-236ENST00000537750 HYPKQ9NX55 129 aa17.81■□□□□ 0.44
SYNE1-236ENST00000537750 CRB1P82279 1406 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 SMTNL1A8MU46 457 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 ZBTB22O15209 634 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 FLIIQ13045 1269 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 MAP3K11Q16584 847 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 ADCK5Q3MIX3 580 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 HSP90AB2PQ58FF8 381 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 ANO6Q4KMQ2 910 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 ZNF592Q92610 1267 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 TRIM5Q9C035 493 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 NUP62CLQ9H1M0 184 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 CBX8Q9HC52 389 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 STAG3Q9UJ98 1225 aa17.8■□□□□ 0.44
SYNE1-236ENST00000537750 ALKQ9UM73 1620 aa17.79■□□□□ 0.44
SYNE1-236ENST00000537750 PI4K2BQ8TCG2 481 aa17.79■□□□□ 0.44
SYNE1-236ENST00000537750 RTF1Q92541 710 aaKnown RBP17.79■□□□□ 0.44
SYNE1-236ENST00000537750 STK31Q9BXU1 1019 aa17.79■□□□□ 0.44
SYNE1-236ENST00000537750 ST3GAL1Q11201 340 aa17.79■□□□□ 0.44
SYNE1-236ENST00000537750 ZSCAN25Q6NSZ9 544 aa17.79■□□□□ 0.44
SYNE1-236ENST00000537750 WASLO00401 505 aaPredicted RBP17.78■□□□□ 0.44
SYNE1-236ENST00000537750 SURF6O75683 361 aaKnown RBP17.78■□□□□ 0.44
SYNE1-236ENST00000537750 NUDT16Q96DE0 195 aaKnown RBP17.78■□□□□ 0.44
SYNE1-236ENST00000537750 DDX41Q9UJV9 622 aaKnown RBP17.78■□□□□ 0.44
SYNE1-236ENST00000537750 SLFN14P0C7P3 912 aa17.78■□□□□ 0.44
SYNE1-236ENST00000537750 JAKMIP1Q96N16 626 aaKnown RBP17.78■□□□□ 0.44
SYNE1-236ENST00000537750 DACT1Q9NYF0 836 aa17.78■□□□□ 0.44
SYNE1-236ENST00000537750 GTF2E1P29083 439 aaPredicted RBP17.77■□□□□ 0.44
SYNE1-236ENST00000537750 TPD52L1Q16890 204 aaPredicted RBP17.77■□□□□ 0.44
SYNE1-236ENST00000537750 CCDC112Q8NEF3 446 aa17.77■□□□□ 0.44
SYNE1-236ENST00000537750 USP44Q9H0E7 712 aa17.77■□□□□ 0.44
SYNE1-236ENST00000537750 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.77■□□□□ 0.44
SYNE1-236ENST00000537750 V9GYY5 206 aaPredicted RBP17.77■□□□□ 0.44
SYNE1-236ENST00000537750 PTH1RQ03431 593 aa17.77■□□□□ 0.44
SYNE1-236ENST00000537750 CACTINQ8WUQ7 758 aaKnown RBP17.77■□□□□ 0.44
SYNE1-236ENST00000537750 PDRG1Q9NUG6 133 aa17.77■□□□□ 0.44
SYNE1-236ENST00000537750 EPB41L2O43491 1005 aaKnown RBP17.77■□□□□ 0.43
SYNE1-236ENST00000537750 ME3Q16798 604 aa17.77■□□□□ 0.43
SYNE1-236ENST00000537750 TFIP11Q9UBB9 837 aaKnown RBP17.77■□□□□ 0.43
SYNE1-236ENST00000537750 ZNF75DP51815 510 aa17.76■□□□□ 0.43
SYNE1-236ENST00000537750 COL9A3Q14050 684 aaPredicted RBP17.76■□□□□ 0.43
SYNE1-236ENST00000537750 MTHFSDQ2M296 383 aaKnown RBP17.76■□□□□ 0.43
SYNE1-236ENST00000537750 CCDC144BQ3MJ40 725 aa17.76■□□□□ 0.43
SYNE1-236ENST00000537750 PRPF40BQ6NWY9 871 aaKnown RBP17.76■□□□□ 0.43
SYNE1-236ENST00000537750 CDC37L1Q7L3B6 337 aa17.76■□□□□ 0.43
SYNE1-236ENST00000537750 CCDC144CPQ8IYA2 1237 aa17.76■□□□□ 0.43
SYNE1-236ENST00000537750 TNMDQ9H2S6 317 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms