RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 VIRMAQ69YN4 1812 aaKnown RBP12.94□□□□□ -0.34
USP28-205ENST00000537706 ITGBL1O95965 494 aaPredicted RBP12.94□□□□□ -0.34
USP28-205ENST00000537706 FBLN1P23142 703 aa12.94□□□□□ -0.34
USP28-205ENST00000537706 TM4SF1P30408 202 aa12.93□□□□□ -0.34
USP28-205ENST00000537706 PNMA8AQ86V59 439 aaPredicted RBP12.93□□□□□ -0.34
USP28-205ENST00000537706 CAPNS2Q96L46 248 aa12.93□□□□□ -0.34
USP28-205ENST00000537706 GPR101Q96P66 508 aaPredicted RBP12.93□□□□□ -0.34
USP28-205ENST00000537706 PUS7Q96PZ0 661 aaKnown RBP12.93□□□□□ -0.34
USP28-205ENST00000537706 TAOK3Q9H2K8 898 aa12.93□□□□□ -0.34
USP28-205ENST00000537706 L3MBTL3Q96JM7 780 aaPredicted RBP12.92□□□□□ -0.34
USP28-205ENST00000537706 ZNF219Q9P2Y4 722 aaPredicted RBP12.92□□□□□ -0.34
USP28-205ENST00000537706 HACL1Q9UJ83 578 aa12.92□□□□□ -0.34
USP28-205ENST00000537706 FLT4P35916 1363 aa12.92□□□□□ -0.34
USP28-205ENST00000537706 KIF24Q5T7B8 1368 aa12.92□□□□□ -0.34
USP28-205ENST00000537706 HSP90AB1P08238 724 aaKnown RBP12.92□□□□□ -0.34
USP28-205ENST00000537706 PHKG2P15735 406 aa12.92□□□□□ -0.34
USP28-205ENST00000537706 CRKLP46109 303 aaKnown RBP12.92□□□□□ -0.34
USP28-205ENST00000537706 GRM1Q13255 1194 aa12.92□□□□□ -0.34
USP28-205ENST00000537706 SOGA3Q5TF21 947 aa12.92□□□□□ -0.34
USP28-205ENST00000537706 CNTROBQ8N137 903 aa12.92□□□□□ -0.34
USP28-205ENST00000537706 LTBP3Q9NS15 1303 aa12.91□□□□□ -0.34
USP28-205ENST00000537706 ERVV-2B6SEH9 535 aa12.91□□□□□ -0.34
USP28-205ENST00000537706 HSP90AB2PQ58FF8 381 aa12.91□□□□□ -0.34
USP28-205ENST00000537706 ZNF622Q969S3 477 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP28-205ENST00000537706 MAP2K2P36507 400 aa12.9□□□□□ -0.34
USP28-205ENST00000537706 SLC4A9Q96Q91 983 aa12.9□□□□□ -0.35
USP28-205ENST00000537706 C21orf2O43822 256 aa12.89□□□□□ -0.35
USP28-205ENST00000537706 SERPINB2P05120 415 aa12.89□□□□□ -0.35
USP28-205ENST00000537706 USPL1Q5W0Q7 1092 aa12.89□□□□□ -0.35
USP28-205ENST00000537706 TSKSQ9UJT2 592 aa12.89□□□□□ -0.35
USP28-205ENST00000537706 EPHX2P34913 555 aa12.88□□□□□ -0.35
USP28-205ENST00000537706 ZNF831Q5JPB2 1677 aa12.88□□□□□ -0.35
USP28-205ENST00000537706 PDE6BP35913 854 aa12.88□□□□□ -0.35
USP28-205ENST00000537706 CABP4P57796 275 aa12.88□□□□□ -0.35
USP28-205ENST00000537706 NFIXQ14938 502 aa12.87□□□□□ -0.35
USP28-205ENST00000537706 MAP1SQ66K74 1059 aaPredicted RBP12.87□□□□□ -0.35
USP28-205ENST00000537706 NBPF15Q8N660 670 aa12.87□□□□□ -0.35
USP28-205ENST00000537706 DDX21Q9NR30 783 aaKnown RBP eCLIP12.87□□□□□ -0.35
USP28-205ENST00000537706 SOX10P56693 466 aa12.86□□□□□ -0.35
USP28-205ENST00000537706 CYP4F22Q6NT55 531 aa12.86□□□□□ -0.35
USP28-205ENST00000537706 PTCD1O75127 700 aaKnown RBP12.86□□□□□ -0.35
USP28-205ENST00000537706 CNKSR1Q969H4 720 aa12.86□□□□□ -0.35
USP28-205ENST00000537706 TONSLQ96HA7 1378 aa12.85□□□□□ -0.35
USP28-205ENST00000537706 L3MBTL2Q969R5 705 aa12.85□□□□□ -0.35
USP28-205ENST00000537706 GGNBP2Q9H3C7 697 aa12.85□□□□□ -0.35
USP28-205ENST00000537706 NARFQ9UHQ1 456 aa12.84□□□□□ -0.35
USP28-205ENST00000537706 SCN4AP35499 1836 aa12.84□□□□□ -0.35
USP28-205ENST00000537706 SLC24A1O60721 1099 aa12.84□□□□□ -0.35
USP28-205ENST00000537706 PCNTO95613 3336 aa12.84□□□□□ -0.35
USP28-205ENST00000537706 COL5A3P25940 1745 aaPredicted RBP12.84□□□□□ -0.35
USP28-205ENST00000537706 THSD7BQ9C0I4 1608 aa12.84□□□□□ -0.35
USP28-205ENST00000537706 BRPF1P55201 1214 aaPredicted RBP12.83□□□□□ -0.36
USP28-205ENST00000537706 CCDC88AQ3V6T2 1871 aa12.83□□□□□ -0.36
USP28-205ENST00000537706 NPHP1O15259 732 aa12.82□□□□□ -0.36
USP28-205ENST00000537706 LMOD1P29536 600 aaPredicted RBP12.82□□□□□ -0.36
USP28-205ENST00000537706 BRIP1Q9BX63 1249 aa12.82□□□□□ -0.36
USP28-205ENST00000537706 CARD11Q9BXL7 1154 aa12.82□□□□□ -0.36
USP28-205ENST00000537706 TLL2Q9Y6L7 1015 aa12.82□□□□□ -0.36
USP28-205ENST00000537706 NCAPD2Q15021 1401 aa12.82□□□□□ -0.36
USP28-205ENST00000537706 DLEC1Q9Y238 1755 aa12.82□□□□□ -0.36
USP28-205ENST00000537706 FYB1O15117 783 aa12.82□□□□□ -0.36
USP28-205ENST00000537706 PPM1GO15355 546 aaPredicted RBP12.82□□□□□ -0.36
USP28-205ENST00000537706 SOS1Q07889 1333 aaPredicted RBP12.81□□□□□ -0.36
USP28-205ENST00000537706 AOC2O75106 756 aa12.81□□□□□ -0.36
USP28-205ENST00000537706 INTS5Q6P9B9 1019 aaKnown RBP12.81□□□□□ -0.36
USP28-205ENST00000537706 BICDL1Q6ZP65 573 aa12.81□□□□□ -0.36
USP28-205ENST00000537706 DICER1Q9UPY3 1922 aaKnown RBP12.81□□□□□ -0.36
USP28-205ENST00000537706 WASHC2AQ641Q2 1341 aa12.8□□□□□ -0.36
USP28-205ENST00000537706 PLEKHO1Q53GL0 409 aaPredicted RBP12.8□□□□□ -0.36
USP28-205ENST00000537706 CCDC93Q567U6 631 aa12.8□□□□□ -0.36
USP28-205ENST00000537706 STYK1Q6J9G0 422 aa12.8□□□□□ -0.36
USP28-205ENST00000537706 EYA1Q99502 592 aa12.8□□□□□ -0.36
USP28-205ENST00000537706 RNF123Q5XPI4 1314 aa12.79□□□□□ -0.36
USP28-205ENST00000537706 COL15A1P39059 1388 aa12.79□□□□□ -0.36
USP28-205ENST00000537706 ZNF541Q9H0D2 1346 aa12.79□□□□□ -0.36
USP28-205ENST00000537706 HHIPL1Q96JK4 782 aa12.78□□□□□ -0.36
USP28-205ENST00000537706 EMILIN1Q9Y6C2 1016 aa12.78□□□□□ -0.36
USP28-205ENST00000537706 A0A087WZG4 1122 aa12.78□□□□□ -0.36
USP28-205ENST00000537706 ST20-MTHFSA0A0A6YYL1 179 aa12.78□□□□□ -0.36
USP28-205ENST00000537706 MTHFSP49914 203 aa12.78□□□□□ -0.36
USP28-205ENST00000537706 FKBP4Q02790 459 aaKnown RBP eCLIP12.78□□□□□ -0.36
USP28-205ENST00000537706 HABP4Q5JVS0 413 aaKnown RBP12.78□□□□□ -0.36
USP28-205ENST00000537706 C1orf141Q5JVX7 400 aa12.78□□□□□ -0.36
USP28-205ENST00000537706 PRPF40BQ6NWY9 871 aaKnown RBP12.78□□□□□ -0.36
USP28-205ENST00000537706 GPC2Q8N158 579 aa12.78□□□□□ -0.36
USP28-205ENST00000537706 CARMIL3Q8ND23 1372 aa12.77□□□□□ -0.36
USP28-205ENST00000537706 LTBP1Q14766 1721 aa12.77□□□□□ -0.36
USP28-205ENST00000537706 NRXN2Q9P2S2 1712 aa12.77□□□□□ -0.36
USP28-205ENST00000537706 PDE4DIPQ5VU43 2346 aa12.77□□□□□ -0.37
USP28-205ENST00000537706 ST5P78524 1137 aa12.77□□□□□ -0.37
USP28-205ENST00000537706 AMOTQ4VCS5 1084 aa12.77□□□□□ -0.37
USP28-205ENST00000537706 ZNF530Q6P9A1 599 aaPredicted RBP12.77□□□□□ -0.37
USP28-205ENST00000537706 MASTLQ96GX5 879 aa12.77□□□□□ -0.37
USP28-205ENST00000537706 EIF6P56537 245 aaKnown RBP12.76□□□□□ -0.37
USP28-205ENST00000537706 FER1L6Q2WGJ9 1857 aa12.76□□□□□ -0.37
USP28-205ENST00000537706 MYH14Q7Z406 1995 aaKnown RBP12.76□□□□□ -0.37
USP28-205ENST00000537706 NOGQ13253 232 aa12.76□□□□□ -0.37
USP28-205ENST00000537706 CIAPIN1Q6FI81 312 aa12.76□□□□□ -0.37
USP28-205ENST00000537706 DNAJC10Q8IXB1 793 aa12.76□□□□□ -0.37
USP28-205ENST00000537706 RTKN2Q8IZC4 609 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms