RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 ZMYM1Q5SVZ6 1142 aa6.58□□□□□ -1.36
SKA3-207ENST00000536239 FCHSD1Q86WN1 690 aa6.58□□□□□ -1.36
SKA3-207ENST00000536239 PHTF2Q8N3S3 785 aa6.58□□□□□ -1.36
SKA3-207ENST00000536239 MTMR14Q8NCE2 650 aa6.58□□□□□ -1.36
SKA3-207ENST00000536239 AVENQ9NQS1 362 aaPredicted RBP6.58□□□□□ -1.36
SKA3-207ENST00000536239 HCN2Q9UL51 889 aa6.58□□□□□ -1.36
SKA3-207ENST00000536239 MAPTP10636 758 aaKnown RBP6.57□□□□□ -1.36
SKA3-207ENST00000536239 AIDAQ96BJ3 306 aa6.57□□□□□ -1.36
SKA3-207ENST00000536239 TRIM11Q96F44 468 aa6.57□□□□□ -1.36
SKA3-207ENST00000536239 PLVAPQ9BX97 442 aa6.57□□□□□ -1.36
SKA3-207ENST00000536239 DOLKQ9UPQ8 538 aa6.57□□□□□ -1.36
SKA3-207ENST00000536239 SPATA31C1P0DKV0 1188 aa6.56□□□□□ -1.36
SKA3-207ENST00000536239 CD33P20138 364 aa6.56□□□□□ -1.36
SKA3-207ENST00000536239 IL27Q8NEV9 243 aa6.56□□□□□ -1.36
SKA3-207ENST00000536239 NIFKQ9BYG3 293 aaKnown RBP6.56□□□□□ -1.36
SKA3-207ENST00000536239 A0A1W2PNR3 127 aa6.55□□□□□ -1.36
SKA3-207ENST00000536239 DCDC2BA2VCK2 349 aa6.55□□□□□ -1.36
SKA3-207ENST00000536239 APBB1O00213 710 aa6.55□□□□□ -1.36
SKA3-207ENST00000536239 KHNYNO15037 678 aaKnown RBP6.55□□□□□ -1.36
SKA3-207ENST00000536239 INHAP05111 366 aa6.55□□□□□ -1.36
SKA3-207ENST00000536239 SIRT1Q96EB6 747 aa6.55□□□□□ -1.36
SKA3-207ENST00000536239 SNRKQ9NRH2 765 aa6.55□□□□□ -1.36
SKA3-207ENST00000536239 SCNN1DP51172 638 aa6.54□□□□□ -1.36
SKA3-207ENST00000536239 GDF10P55107 478 aa6.54□□□□□ -1.36
SKA3-207ENST00000536239 PCBP4P57723 403 aaKnown RBP6.54□□□□□ -1.36
SKA3-207ENST00000536239 RSPO4Q2I0M5 234 aaPredicted RBP6.54□□□□□ -1.36
SKA3-207ENST00000536239 SLFNL1Q499Z3 407 aa6.54□□□□□ -1.36
SKA3-207ENST00000536239 ARSJQ5FYB0 599 aaPredicted RBP6.54□□□□□ -1.36
SKA3-207ENST00000536239 CHIC2Q9UKJ5 165 aa6.54□□□□□ -1.36
SKA3-207ENST00000536239 SMTNP53814 917 aa6.53□□□□□ -1.36
SKA3-207ENST00000536239 EIF4G2P78344 907 aaKnown RBP eCLIP6.53□□□□□ -1.36
SKA3-207ENST00000536239 OXLD1Q5BKU9 147 aa6.53□□□□□ -1.36
SKA3-207ENST00000536239 NKAPLQ5M9Q1 402 aa6.53□□□□□ -1.36
SKA3-207ENST00000536239 ZNF468Q5VIY5 522 aaPredicted RBP6.53□□□□□ -1.36
SKA3-207ENST00000536239 PRR12Q9ULL5 1215 aa6.53□□□□□ -1.36
SKA3-207ENST00000536239 FAM157BP0CG42 384 aa6.52□□□□□ -1.37
SKA3-207ENST00000536239 NBPF1Q3BBV0 1214 aa6.52□□□□□ -1.37
SKA3-207ENST00000536239 ZIC5Q96T25 663 aa6.52□□□□□ -1.37
SKA3-207ENST00000536239 FOXD4L6Q3SYB3 417 aaPredicted RBP6.51□□□□□ -1.37
SKA3-207ENST00000536239 FOXD4L3Q6VB84 417 aaPredicted RBP6.51□□□□□ -1.37
SKA3-207ENST00000536239 ZNF295-AS1Q8N0V1 137 aa6.51□□□□□ -1.37
SKA3-207ENST00000536239 ZDHHC3Q9NYG2 299 aa6.51□□□□□ -1.37
SKA3-207ENST00000536239 MARK1Q9P0L2 795 aa6.51□□□□□ -1.37
SKA3-207ENST00000536239 ELOA3CA0A087WX78 387 aaPredicted RBP6.5□□□□□ -1.37
SKA3-207ENST00000536239 SCO2A0A1W2PP80 73 aa6.5□□□□□ -1.37
SKA3-207ENST00000536239 SPDYE3A6NKU9 549 aa6.5□□□□□ -1.37
SKA3-207ENST00000536239 ELOA3DA6NLF2 546 aaPredicted RBP6.5□□□□□ -1.37
SKA3-207ENST00000536239 CDK2AP1O14519 115 aa6.5□□□□□ -1.37
SKA3-207ENST00000536239 TATP17735 454 aaPredicted RBP6.5□□□□□ -1.37
SKA3-207ENST00000536239 ALAS2P22557 587 aa6.5□□□□□ -1.37
SKA3-207ENST00000536239 ELOA3BQ3SY89 546 aa6.5□□□□□ -1.37
SKA3-207ENST00000536239 ELOA3Q8NG57 546 aa6.5□□□□□ -1.37
SKA3-207ENST00000536239 STRN4Q9NRL3 753 aa6.5□□□□□ -1.37
SKA3-207ENST00000536239 TPSG1Q9NRR2 321 aa6.5□□□□□ -1.37
SKA3-207ENST00000536239 GJA3Q9Y6H8 435 aa6.5□□□□□ -1.37
SKA3-207ENST00000536239 EFSO43281 561 aa6.49□□□□□ -1.37
SKA3-207ENST00000536239 LAMC2Q13753 1193 aa6.49□□□□□ -1.37
SKA3-207ENST00000536239 MTFR1Q15390 333 aa6.49□□□□□ -1.37
SKA3-207ENST00000536239 NEUROD2Q15784 382 aa6.49□□□□□ -1.37
SKA3-207ENST00000536239 PRRT3Q5FWE3 981 aa6.49□□□□□ -1.37
SKA3-207ENST00000536239 SAMD5Q5TGI4 173 aa6.49□□□□□ -1.37
SKA3-207ENST00000536239 KRTAP1-3Q8IUG1 177 aa6.49□□□□□ -1.37
SKA3-207ENST00000536239 SLC4A9Q96Q91 983 aa6.49□□□□□ -1.37
SKA3-207ENST00000536239 MDFIQ99750 246 aa6.49□□□□□ -1.37
SKA3-207ENST00000536239 SERTAD1Q9UHV2 236 aa6.49□□□□□ -1.37
SKA3-207ENST00000536239 IQSEC3Q9UPP2 1182 aaPredicted RBP6.49□□□□□ -1.37
SKA3-207ENST00000536239 TBC1D2BQ9UPU7 963 aa6.49□□□□□ -1.37
SKA3-207ENST00000536239 A6NJY4 79 aa6.48□□□□□ -1.37
SKA3-207ENST00000536239 TMEM229AB2RXF0 380 aa6.48□□□□□ -1.37
SKA3-207ENST00000536239 DYRK3O43781 588 aa6.48□□□□□ -1.37
SKA3-207ENST00000536239 APBA3O96018 575 aa6.48□□□□□ -1.37
SKA3-207ENST00000536239 SYT9Q86SS6 491 aa6.48□□□□□ -1.37
SKA3-207ENST00000536239 CABP1Q9NZU7 370 aa6.48□□□□□ -1.37
SKA3-207ENST00000536239 IRF5Q13568 498 aa6.47□□□□□ -1.37
SKA3-207ENST00000536239 MAP7D1Q3KQU3 841 aa6.47□□□□□ -1.37
SKA3-207ENST00000536239 ARTNQ5T4W7 220 aa6.47□□□□□ -1.37
SKA3-207ENST00000536239 ZFP64Q9NPA5 681 aa6.47□□□□□ -1.37
SKA3-207ENST00000536239 USP3Q9Y6I4 520 aa6.47□□□□□ -1.37
SKA3-207ENST00000536239 COL9A3Q14050 684 aaPredicted RBP6.46□□□□□ -1.38
SKA3-207ENST00000536239 BICDL1Q6ZP65 573 aa6.46□□□□□ -1.38
SKA3-207ENST00000536239 ADARB2-AS1A8MUL3 147 aa6.45□□□□□ -1.38
SKA3-207ENST00000536239 FAM229AH3BQW9 127 aa6.45□□□□□ -1.38
SKA3-207ENST00000536239 M0R082 166 aa6.45□□□□□ -1.38
SKA3-207ENST00000536239 SIN3BO75182 1162 aa6.45□□□□□ -1.38
SKA3-207ENST00000536239 PLPP7Q8NBV4 271 aa6.45□□□□□ -1.38
SKA3-207ENST00000536239 ZNF417Q8TAU3 575 aa6.45□□□□□ -1.38
SKA3-207ENST00000536239 NACC1Q96RE7 527 aa6.45□□□□□ -1.38
SKA3-207ENST00000536239 ZNF587Q96SQ5 575 aaPredicted RBP6.45□□□□□ -1.38
SKA3-207ENST00000536239 PRM3Q9NNZ6 103 aa6.45□□□□□ -1.38
SKA3-207ENST00000536239 PARP3Q9Y6F1 533 aa6.45□□□□□ -1.38
SKA3-207ENST00000536239 TXLNAP40222 546 aa6.44□□□□□ -1.38
SKA3-207ENST00000536239 TRIM28Q13263 835 aaKnown RBP6.44□□□□□ -1.38
SKA3-207ENST00000536239 PRSS36Q5K4E3 855 aa6.44□□□□□ -1.38
SKA3-207ENST00000536239 KRTAP4-12Q9BQ66 201 aa6.44□□□□□ -1.38
SKA3-207ENST00000536239 PRDM6Q9NQX0 595 aa6.44□□□□□ -1.38
SKA3-207ENST00000536239 STARD13Q9Y3M8 1113 aa6.44□□□□□ -1.38
SKA3-207ENST00000536239 VAC14Q08AM6 782 aa6.43□□□□□ -1.38
SKA3-207ENST00000536239 GRIK4Q16099 956 aa6.43□□□□□ -1.38
SKA3-207ENST00000536239 MICALL1Q8N3F8 863 aa6.43□□□□□ -1.38
SKA3-207ENST00000536239 TNFRSF25Q93038 417 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms