RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ACDQ96AP0 544 aa8.06□□□□□ -1.12
CD44-235ENST00000532339 LRRC4BQ9NT99 713 aa8.06□□□□□ -1.12
CD44-235ENST00000532339 ZDHHC3Q9NYG2 299 aa8.06□□□□□ -1.12
CD44-235ENST00000532339 USP3Q9Y6I4 520 aa8.06□□□□□ -1.12
CD44-235ENST00000532339 SCHIP1Q9P0W5 487 aaPredicted RBP8.05□□□□□ -1.12
CD44-235ENST00000532339 ARSJQ5FYB0 599 aaPredicted RBP8.04□□□□□ -1.12
CD44-235ENST00000532339 CCDC102BQ68D86 513 aa8.04□□□□□ -1.12
CD44-235ENST00000532339 TPCN2Q8NHX9 752 aa8.04□□□□□ -1.12
CD44-235ENST00000532339 SCARF2Q96GP6 870 aaPredicted RBP8.04□□□□□ -1.12
CD44-235ENST00000532339 OXCT2Q9BYC2 517 aaPredicted RBP8.04□□□□□ -1.12
CD44-235ENST00000532339 NDFIP2Q9NV92 336 aa8.04□□□□□ -1.12
CD44-235ENST00000532339 DNAAF2Q9NVR5 837 aaKnown RBP8.04□□□□□ -1.12
CD44-235ENST00000532339 MKRN1Q9UHC7 482 aaKnown RBP8.04□□□□□ -1.12
CD44-235ENST00000532339 A0A1W2PNR3 127 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 PALM3A6NDB9 673 aaPredicted RBP8.03□□□□□ -1.12
CD44-235ENST00000532339 ZBTB7BO15156 539 aaPredicted RBP8.03□□□□□ -1.12
CD44-235ENST00000532339 BNIP3LO60238 219 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 FGFR3P22607 806 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 EPHA4P54764 986 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 CLDN10P78369 228 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 FOXK2Q01167 660 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 TEAD4Q15561 434 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 LARGE2Q8N3Y3 721 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 OGFOD1Q8N543 542 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 ABHD17AQ96GS6 310 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 ZCCHC2Q9C0B9 1178 aaKnown RBP8.03□□□□□ -1.12
CD44-235ENST00000532339 KIAA1024Q9UPX6 916 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 PCDHGC4Q9Y5F7 938 aa8.03□□□□□ -1.12
CD44-235ENST00000532339 BMP4P12644 408 aa8.02□□□□□ -1.13
CD44-235ENST00000532339 GSK3AP49840 483 aa8.02□□□□□ -1.13
CD44-235ENST00000532339 RASSF7Q02833 373 aa8.02□□□□□ -1.13
CD44-235ENST00000532339 SLC9A9Q8IVB4 645 aa8.02□□□□□ -1.13
CD44-235ENST00000532339 TNS4Q8IZW8 715 aa8.02□□□□□ -1.13
CD44-235ENST00000532339 NEDD1Q8NHV4 660 aa8.02□□□□□ -1.13
CD44-235ENST00000532339 KLRG1Q96E93 195 aa8.02□□□□□ -1.13
CD44-235ENST00000532339 CALR3Q96L12 384 aaKnown RBP8.02□□□□□ -1.13
CD44-235ENST00000532339 TFIP11Q9UBB9 837 aaKnown RBP8.02□□□□□ -1.13
CD44-235ENST00000532339 RBM19Q9Y4C8 960 aaKnown RBP8.02□□□□□ -1.13
CD44-235ENST00000532339 CC2D2AQ9P2K1 1620 aa8.01□□□□□ -1.13
CD44-235ENST00000532339 M0R2N6 131 aa8.01□□□□□ -1.13
CD44-235ENST00000532339 ATXN7O15265 892 aaPredicted RBP8.01□□□□□ -1.13
CD44-235ENST00000532339 OIP5O43482 229 aa8.01□□□□□ -1.13
CD44-235ENST00000532339 TMEM151AQ8N4L1 468 aa8.01□□□□□ -1.13
CD44-235ENST00000532339 GDF2Q9UK05 429 aaPredicted RBP8.01□□□□□ -1.13
CD44-235ENST00000532339 MAFBQ9Y5Q3 323 aaPredicted RBP8.01□□□□□ -1.13
CD44-235ENST00000532339 PARP3Q9Y6F1 533 aa8.01□□□□□ -1.13
CD44-235ENST00000532339 GJA3Q9Y6H8 435 aa8.01□□□□□ -1.13
CD44-235ENST00000532339 GDF11O95390 407 aa8□□□□□ -1.13
CD44-235ENST00000532339 NOS2P35228 1153 aa8□□□□□ -1.13
CD44-235ENST00000532339 KANK3Q6NY19 840 aa8□□□□□ -1.13
CD44-235ENST00000532339 BICDL1Q6ZP65 573 aa8□□□□□ -1.13
CD44-235ENST00000532339 SIX5Q8N196 739 aa8□□□□□ -1.13
CD44-235ENST00000532339 GOLGA6L1Q8N7Z2 621 aa8□□□□□ -1.13
CD44-235ENST00000532339 ZDHHC1Q8WTX9 485 aa8□□□□□ -1.13
CD44-235ENST00000532339 L3MBTL2Q969R5 705 aa8□□□□□ -1.13
CD44-235ENST00000532339 ZIC5Q96T25 663 aa8□□□□□ -1.13
CD44-235ENST00000532339 SERTM1A2A2V5 107 aa7.99□□□□□ -1.13
CD44-235ENST00000532339 IRS1P35568 1242 aa7.99□□□□□ -1.13
CD44-235ENST00000532339 TXLNAP40222 546 aa7.99□□□□□ -1.13
CD44-235ENST00000532339 CTBSQ01459 385 aa7.99□□□□□ -1.13
CD44-235ENST00000532339 PODNQ7Z5L7 613 aa7.99□□□□□ -1.13
CD44-235ENST00000532339 ZNF232Q9UNY5 417 aa7.99□□□□□ -1.13
CD44-235ENST00000532339 CHMP3Q9Y3E7 222 aa7.99□□□□□ -1.13
CD44-235ENST00000532339 PHF20L1A8MW92 1017 aa7.98□□□□□ -1.13
CD44-235ENST00000532339 RASA1P20936 1047 aa7.98□□□□□ -1.13
CD44-235ENST00000532339 PSMA6P60900 246 aaKnown RBP7.98□□□□□ -1.13
CD44-235ENST00000532339 TBCELQ5QJ74 424 aa7.98□□□□□ -1.13
CD44-235ENST00000532339 ZNF594Q96JF6 807 aaPredicted RBP7.98□□□□□ -1.13
CD44-235ENST00000532339 PPP1R12CQ9BZL4 782 aa7.98□□□□□ -1.13
CD44-235ENST00000532339 GPC6Q9Y625 555 aaPredicted RBP7.98□□□□□ -1.13
CD44-235ENST00000532339 DCDC2BA2VCK2 349 aa7.97□□□□□ -1.13
CD44-235ENST00000532339 EML1O00423 815 aa7.97□□□□□ -1.13
CD44-235ENST00000532339 C2CD2LO14523 706 aa7.97□□□□□ -1.13
CD44-235ENST00000532339 KHNYNO15037 678 aaKnown RBP7.97□□□□□ -1.13
CD44-235ENST00000532339 FAM157BP0CG42 384 aa7.97□□□□□ -1.13
CD44-235ENST00000532339 MAPTP10636 758 aaKnown RBP7.97□□□□□ -1.13
CD44-235ENST00000532339 TNP2Q05952 138 aa7.97□□□□□ -1.13
CD44-235ENST00000532339 SAMD5Q5TGI4 173 aa7.97□□□□□ -1.13
CD44-235ENST00000532339 LARP1Q6PKG0 1096 aaKnown RBP7.97□□□□□ -1.13
CD44-235ENST00000532339 BEND7Q8N7W2 519 aaPredicted RBP7.97□□□□□ -1.13
CD44-235ENST00000532339 GALNT6Q8NCL4 622 aa7.97□□□□□ -1.13
CD44-235ENST00000532339 TSPAN10Q9H1Z9 355 aaPredicted RBP7.97□□□□□ -1.13
CD44-235ENST00000532339 ARAFP10398 606 aa7.96□□□□□ -1.14
CD44-235ENST00000532339 FAM182BQ5T319 152 aa7.96□□□□□ -1.14
CD44-235ENST00000532339 SLCO4C1Q6ZQN7 724 aa7.96□□□□□ -1.14
CD44-235ENST00000532339 EDARADDQ8WWZ3 215 aa7.96□□□□□ -1.14
CD44-235ENST00000532339 NEUROD4Q9HD90 331 aa7.96□□□□□ -1.14
CD44-235ENST00000532339 SFI1A8K8P3 1242 aa7.95□□□□□ -1.14
CD44-235ENST00000532339 DKK1O94907 266 aa7.95□□□□□ -1.14
CD44-235ENST00000532339 HIRAP54198 1017 aaPredicted RBP7.95□□□□□ -1.14
CD44-235ENST00000532339 SEC13P55735 322 aa7.95□□□□□ -1.14
CD44-235ENST00000532339 LAMC2Q13753 1193 aa7.95□□□□□ -1.14
CD44-235ENST00000532339 KCTD17Q8N5Z5 321 aa7.95□□□□□ -1.14
CD44-235ENST00000532339 TSEN2Q8NCE0 465 aaKnown RBP7.95□□□□□ -1.14
CD44-235ENST00000532339 GGA1Q9UJY5 639 aa7.95□□□□□ -1.14
CD44-235ENST00000532339 DNMT3AQ9Y6K1 912 aaPredicted RBP7.95□□□□□ -1.14
CD44-235ENST00000532339 CNTNAP5Q8WYK1 1306 aa7.95□□□□□ -1.14
CD44-235ENST00000532339 CD33P20138 364 aa7.94□□□□□ -1.14
CD44-235ENST00000532339 C1orf53Q5VUE5 145 aa7.94□□□□□ -1.14
CD44-235ENST00000532339 C1orf229Q6ZS94 237 aaPredicted RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms