RNA–Protein interactions for RNA: ENST00000531516.1

C11orf54-210, Transcript of chromosome 11 open reading frame 54, humanhuman

TSL 3

Gene C11orf54, Length 168 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf54-210ENST00000531516 COL15A1P39059 1388 aa16.6■□□□□ 0.25
C11orf54-210ENST00000531516 SNRPA1P09661 255 aaKnown RBP16.59■□□□□ 0.25
C11orf54-210ENST00000531516 NFE2L2Q16236 605 aa16.59■□□□□ 0.25
C11orf54-210ENST00000531516 KCPQ6ZWJ8 1503 aa16.59■□□□□ 0.25
C11orf54-210ENST00000531516 YBX3P16989 372 aaKnown RBP eCLIP16.58■□□□□ 0.24
C11orf54-210ENST00000531516 LMOD3Q0VAK6 560 aa16.58■□□□□ 0.24
C11orf54-210ENST00000531516 FKBP8Q14318 412 aa16.58■□□□□ 0.24
C11orf54-210ENST00000531516 COL5A3P25940 1745 aaPredicted RBP16.57■□□□□ 0.24
C11orf54-210ENST00000531516 ADAMTS7Q9UKP4 1686 aa16.57■□□□□ 0.24
C11orf54-210ENST00000531516 IL6STP40189 918 aaPredicted RBP16.57■□□□□ 0.24
C11orf54-210ENST00000531516 NPHP1O15259 732 aa16.56■□□□□ 0.24
C11orf54-210ENST00000531516 DCTN1Q14203 1278 aa16.56■□□□□ 0.24
C11orf54-210ENST00000531516 CICQ96RK0 1608 aaPredicted RBP16.56■□□□□ 0.24
C11orf54-210ENST00000531516 EIF5P55010 431 aaKnown RBP16.55■□□□□ 0.24
C11orf54-210ENST00000531516 ZNF784Q8NCA9 323 aaPredicted RBP16.55■□□□□ 0.24
C11orf54-210ENST00000531516 BCS1LQ9Y276 419 aa16.55■□□□□ 0.24
C11orf54-210ENST00000531516 A0A0G2JLW4 131 aa16.54■□□□□ 0.24
C11orf54-210ENST00000531516 TM4SF1P30408 202 aa16.54■□□□□ 0.24
C11orf54-210ENST00000531516 PLEKHF1Q96S99 279 aa16.54■□□□□ 0.24
C11orf54-210ENST00000531516 WWC3Q9ULE0 1092 aa16.54■□□□□ 0.24
C11orf54-210ENST00000531516 C10orf71Q711Q0 1435 aa16.53■□□□□ 0.24
C11orf54-210ENST00000531516 TJP1Q07157 1748 aa16.53■□□□□ 0.24
C11orf54-210ENST00000531516 KCNQ3O43525 872 aa16.53■□□□□ 0.24
C11orf54-210ENST00000531516 RIPK4P57078 832 aa16.53■□□□□ 0.24
C11orf54-210ENST00000531516 PIM2Q9P1W9 311 aa16.53■□□□□ 0.24
C11orf54-210ENST00000531516 ZNF652Q9Y2D9 606 aa16.53■□□□□ 0.24
C11orf54-210ENST00000531516 POLRMTO00411 1230 aaKnown RBP16.52■□□□□ 0.24
C11orf54-210ENST00000531516 A1BGP04217 495 aa16.52■□□□□ 0.24
C11orf54-210ENST00000531516 DPEP1P16444 411 aa16.52■□□□□ 0.24
C11orf54-210ENST00000531516 DDR1Q08345 913 aa16.52■□□□□ 0.24
C11orf54-210ENST00000531516 NFIXQ14938 502 aa16.52■□□□□ 0.24
C11orf54-210ENST00000531516 TBC1D2BQ9UPU7 963 aa16.52■□□□□ 0.24
C11orf54-210ENST00000531516 SERPINB2P05120 415 aa16.51■□□□□ 0.23
C11orf54-210ENST00000531516 BICDL1Q6ZP65 573 aa16.51■□□□□ 0.23
C11orf54-210ENST00000531516 DZIP3Q86Y13 1208 aaKnown RBP16.51■□□□□ 0.23
C11orf54-210ENST00000531516 SETDB2Q96T68 719 aa16.51■□□□□ 0.23
C11orf54-210ENST00000531516 PXDNLA1KZ92 1463 aa16.5■□□□□ 0.23
C11orf54-210ENST00000531516 DALRD3Q5D0E6 543 aaKnown RBP16.5■□□□□ 0.23
C11orf54-210ENST00000531516 PRKRIP1Q9H875 184 aaPredicted RBP16.5■□□□□ 0.23
C11orf54-210ENST00000531516 PDZRN3Q9UPQ7 1066 aa16.5■□□□□ 0.23
C11orf54-210ENST00000531516 USP16Q9Y5T5 823 aa16.5■□□□□ 0.23
C11orf54-210ENST00000531516 C4AP0C0L4 1744 aa16.5■□□□□ 0.23
C11orf54-210ENST00000531516 MYH14Q7Z406 1995 aaKnown RBP16.49■□□□□ 0.23
C11orf54-210ENST00000531516 ARHGAP27Q6ZUM4 889 aa16.49■□□□□ 0.23
C11orf54-210ENST00000531516 RUNDC1Q96C34 613 aa16.49■□□□□ 0.23
C11orf54-210ENST00000531516 BABAM1Q9NWV8 329 aa16.49■□□□□ 0.23
C11orf54-210ENST00000531516 MIS18AQ9NYP9 233 aa16.49■□□□□ 0.23
C11orf54-210ENST00000531516 TSPYL4Q9UJ04 414 aa16.49■□□□□ 0.23
C11orf54-210ENST00000531516 H0YIN7 160 aa16.48■□□□□ 0.23
C11orf54-210ENST00000531516 TMPOP42166 694 aaKnown RBP16.48■□□□□ 0.23
C11orf54-210ENST00000531516 CLEC4GQ6UXB4 293 aa16.48■□□□□ 0.23
C11orf54-210ENST00000531516 UBR2Q8IWV8 1755 aa16.48■□□□□ 0.23
C11orf54-210ENST00000531516 CARMIL3Q8ND23 1372 aa16.48■□□□□ 0.23
C11orf54-210ENST00000531516 GIGYF1O75420 1035 aaPredicted RBP16.47■□□□□ 0.23
C11orf54-210ENST00000531516 PDE6BP35913 854 aa16.47■□□□□ 0.23
C11orf54-210ENST00000531516 ST5P78524 1137 aa16.47■□□□□ 0.23
C11orf54-210ENST00000531516 NEUROD2Q15784 382 aa16.47■□□□□ 0.23
C11orf54-210ENST00000531516 RGL2O15211 777 aa16.46■□□□□ 0.23
C11orf54-210ENST00000531516 TBC1D9BQ66K14 1250 aa16.46■□□□□ 0.23
C11orf54-210ENST00000531516 CCDC146Q8IYE0 955 aa16.46■□□□□ 0.23
C11orf54-210ENST00000531516 CNBD1Q8NA66 436 aa16.46■□□□□ 0.23
C11orf54-210ENST00000531516 THUMPD2Q9BTF0 503 aaKnown RBP16.46■□□□□ 0.23
C11orf54-210ENST00000531516 BCL2L12Q9HB09 334 aa16.46■□□□□ 0.23
C11orf54-210ENST00000531516 CAMTA2O94983 1202 aa16.45■□□□□ 0.22
C11orf54-210ENST00000531516 EIF4A1P60842 406 aaKnown RBP16.45■□□□□ 0.22
C11orf54-210ENST00000531516 KIF6Q6ZMV9 814 aa16.45■□□□□ 0.22
C11orf54-210ENST00000531516 GPBP1L1Q9HC44 474 aaPredicted RBP16.45■□□□□ 0.22
C11orf54-210ENST00000531516 CHD4Q14839 1912 aa16.45■□□□□ 0.22
C11orf54-210ENST00000531516 VIRMAQ69YN4 1812 aaKnown RBP16.45■□□□□ 0.22
C11orf54-210ENST00000531516 PRAMEF22A3QJZ6 481 aa16.44■□□□□ 0.22
C11orf54-210ENST00000531516 CHRNA5P30532 468 aa16.44■□□□□ 0.22
C11orf54-210ENST00000531516 NBPF5PQ86XG9 351 aaPredicted RBP16.44■□□□□ 0.22
C11orf54-210ENST00000531516 C2CD5Q86YS7 1000 aa16.44■□□□□ 0.22
C11orf54-210ENST00000531516 BRIP1Q9BX63 1249 aa16.44■□□□□ 0.22
C11orf54-210ENST00000531516 ADAMTS8Q9UP79 889 aa16.44■□□□□ 0.22
C11orf54-210ENST00000531516 SIPA1L3O60292 1781 aaPredicted RBP16.43■□□□□ 0.22
C11orf54-210ENST00000531516 ZNF316A6NFI3 1004 aaPredicted RBP16.43■□□□□ 0.22
C11orf54-210ENST00000531516 KCNA3P22001 575 aa16.43■□□□□ 0.22
C11orf54-210ENST00000531516 GTF2E1P29083 439 aaPredicted RBP16.43■□□□□ 0.22
C11orf54-210ENST00000531516 PIP4K2AP48426 406 aaPredicted RBP16.43■□□□□ 0.22
C11orf54-210ENST00000531516 CALD1Q05682 793 aaKnown RBP16.43■□□□□ 0.22
C11orf54-210ENST00000531516 TTLL6Q8N841 843 aa16.43■□□□□ 0.22
C11orf54-210ENST00000531516 RRP7AQ9Y3A4 280 aaKnown RBP16.43■□□□□ 0.22
C11orf54-210ENST00000531516 ERBB4Q15303 1308 aa16.43■□□□□ 0.22
C11orf54-210ENST00000531516 GOLGB1Q14789 3259 aaKnown RBP16.42■□□□□ 0.22
C11orf54-210ENST00000531516 TPTE2Q6XPS3 522 aa16.42■□□□□ 0.22
C11orf54-210ENST00000531516 NGEFQ8N5V2 710 aa16.42■□□□□ 0.22
C11orf54-210ENST00000531516 ANP32CO43423 234 aa16.41■□□□□ 0.22
C11orf54-210ENST00000531516 ZNF622Q969S3 477 aaKnown RBP eCLIP16.41■□□□□ 0.22
C11orf54-210ENST00000531516 NIP7Q9Y221 180 aaKnown RBP eCLIP16.41■□□□□ 0.22
C11orf54-210ENST00000531516 LAS1LQ9Y4W2 734 aaKnown RBP16.41■□□□□ 0.22
C11orf54-210ENST00000531516 ATP10DQ9P241 1426 aa16.41■□□□□ 0.22
C11orf54-210ENST00000531516 UTRNP46939 3433 aa16.41■□□□□ 0.22
C11orf54-210ENST00000531516 NBPF26B4DH59 902 aa16.4■□□□□ 0.22
C11orf54-210ENST00000531516 ERVV-1B6SEH8 477 aa16.4■□□□□ 0.22
C11orf54-210ENST00000531516 MYL6BP14649 208 aa16.4■□□□□ 0.22
C11orf54-210ENST00000531516 PRR5LQ6MZQ0 368 aa16.4■□□□□ 0.22
C11orf54-210ENST00000531516 NBPF10Q6P3W6 841 aaKnown RBP16.4■□□□□ 0.22
C11orf54-210ENST00000531516 NBPF15Q8N660 670 aa16.4■□□□□ 0.22
C11orf54-210ENST00000531516 EIF2S2P20042 333 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms