RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 DICER1Q9UPY3 1922 aaKnown RBP11.68□□□□□ -0.54
CD44-232ENST00000531118 AFDNP55196 1824 aaKnown RBP11.68□□□□□ -0.54
CD44-232ENST00000531118 RASSF7Q02833 373 aa11.68□□□□□ -0.54
CD44-232ENST00000531118 NLGN1Q8N2Q7 840 aa11.68□□□□□ -0.54
CD44-232ENST00000531118 ADAMTS7Q9UKP4 1686 aa11.68□□□□□ -0.54
CD44-232ENST00000531118 TJP1Q07157 1748 aa11.67□□□□□ -0.54
CD44-232ENST00000531118 GYS1P13807 737 aa11.67□□□□□ -0.54
CD44-232ENST00000531118 ATP6V1AP38606 617 aa11.67□□□□□ -0.54
CD44-232ENST00000531118 TMF1P82094 1093 aa11.67□□□□□ -0.54
CD44-232ENST00000531118 DALRD3Q5D0E6 543 aaKnown RBP11.67□□□□□ -0.54
CD44-232ENST00000531118 PIM2Q9P1W9 311 aa11.67□□□□□ -0.54
CD44-232ENST00000531118 PCDH10Q9P2E7 1040 aa11.67□□□□□ -0.54
CD44-232ENST00000531118 PARP3Q9Y6F1 533 aa11.67□□□□□ -0.54
CD44-232ENST00000531118 NRXN2Q9P2S2 1712 aa11.66□□□□□ -0.54
CD44-232ENST00000531118 FOXN1O15353 648 aa11.66□□□□□ -0.54
CD44-232ENST00000531118 FAM161AQ3B820 660 aa11.66□□□□□ -0.54
CD44-232ENST00000531118 TMOD3Q9NYL9 352 aa11.66□□□□□ -0.54
CD44-232ENST00000531118 ASAP1Q9ULH1 1129 aa11.66□□□□□ -0.54
CD44-232ENST00000531118 RTCBQ9Y3I0 505 aaKnown RBP11.66□□□□□ -0.54
CD44-232ENST00000531118 CNTNAP4Q9C0A0 1308 aa11.65□□□□□ -0.54
CD44-232ENST00000531118 PYGBP11216 843 aa11.65□□□□□ -0.54
CD44-232ENST00000531118 NKX1-1Q15270 411 aaPredicted RBP11.65□□□□□ -0.54
CD44-232ENST00000531118 PRDM10Q9NQV6 1147 aa11.65□□□□□ -0.54
CD44-232ENST00000531118 KIF24Q5T7B8 1368 aa11.65□□□□□ -0.55
CD44-232ENST00000531118 VEGFAP15692 232 aaPredicted RBP11.64□□□□□ -0.55
CD44-232ENST00000531118 CLCN6P51797 869 aa11.64□□□□□ -0.55
CD44-232ENST00000531118 TRAPPC3LQ5T215 181 aa11.64□□□□□ -0.55
CD44-232ENST00000531118 ARHGEF1Q92888 912 aaKnown RBP11.64□□□□□ -0.55
CD44-232ENST00000531118 MKRN1Q9UHC7 482 aaKnown RBP11.64□□□□□ -0.55
CD44-232ENST00000531118 GLTPD2A6NH11 291 aa11.63□□□□□ -0.55
CD44-232ENST00000531118 CHRNA5P30532 468 aa11.63□□□□□ -0.55
CD44-232ENST00000531118 DDR1Q08345 913 aa11.63□□□□□ -0.55
CD44-232ENST00000531118 HSP90AB2PQ58FF8 381 aa11.63□□□□□ -0.55
CD44-232ENST00000531118 CNTNAP1P78357 1384 aa11.63□□□□□ -0.55
CD44-232ENST00000531118 FER1L6Q2WGJ9 1857 aa11.62□□□□□ -0.55
CD44-232ENST00000531118 THSD7BQ9C0I4 1608 aa11.62□□□□□ -0.55
CD44-232ENST00000531118 PUS7Q96PZ0 661 aaKnown RBP11.62□□□□□ -0.55
CD44-232ENST00000531118 SLC4A9Q96Q91 983 aa11.62□□□□□ -0.55
CD44-232ENST00000531118 ATG3Q9NT62 314 aa11.62□□□□□ -0.55
CD44-232ENST00000531118 COL11A2P13942 1736 aaPredicted RBP11.62□□□□□ -0.55
CD44-232ENST00000531118 PDE4DIPQ5VU43 2346 aa11.61□□□□□ -0.55
CD44-232ENST00000531118 LMNB1P20700 586 aa11.61□□□□□ -0.55
CD44-232ENST00000531118 RFC4P35249 363 aa11.61□□□□□ -0.55
CD44-232ENST00000531118 KIF12Q96FN5 646 aa11.61□□□□□ -0.55
CD44-232ENST00000531118 PHF12Q96QT6 1004 aa11.61□□□□□ -0.55
CD44-232ENST00000531118 USP42Q9H9J4 1324 aaKnown RBP11.6□□□□□ -0.55
CD44-232ENST00000531118 CACNA1SQ13698 1873 aa11.6□□□□□ -0.55
CD44-232ENST00000531118 RPS6KA4O75676 772 aa11.6□□□□□ -0.55
CD44-232ENST00000531118 CTCFP49711 727 aaPredicted RBP11.6□□□□□ -0.55
CD44-232ENST00000531118 EVX2Q03828 476 aa11.6□□□□□ -0.55
CD44-232ENST00000531118 RC3H1Q5TC82 1133 aaKnown RBP11.6□□□□□ -0.55
CD44-232ENST00000531118 AIDAQ96BJ3 306 aa11.6□□□□□ -0.55
CD44-232ENST00000531118 CARD11Q9BXL7 1154 aa11.6□□□□□ -0.55
CD44-232ENST00000531118 GGNBP2Q9H3C7 697 aa11.6□□□□□ -0.55
CD44-232ENST00000531118 SPG7Q9UQ90 795 aa11.6□□□□□ -0.55
CD44-232ENST00000531118 ANKRD31Q8N7Z5 1873 aa11.59□□□□□ -0.55
CD44-232ENST00000531118 TONSLQ96HA7 1378 aa11.59□□□□□ -0.55
CD44-232ENST00000531118 POTECB2RU33 542 aa11.59□□□□□ -0.55
CD44-232ENST00000531118 PHKG2P15735 406 aa11.59□□□□□ -0.55
CD44-232ENST00000531118 ZNF467Q7Z7K2 595 aaPredicted RBP11.59□□□□□ -0.55
CD44-232ENST00000531118 ABHD8Q96I13 439 aa11.59□□□□□ -0.55
CD44-232ENST00000531118 SRP68Q9UHB9 627 aaKnown RBP11.59□□□□□ -0.55
CD44-232ENST00000531118 ARFGEF2Q9Y6D5 1785 aa11.59□□□□□ -0.55
CD44-232ENST00000531118 SCN4AP35499 1836 aa11.58□□□□□ -0.56
CD44-232ENST00000531118 POLRMTO00411 1230 aaKnown RBP11.58□□□□□ -0.56
CD44-232ENST00000531118 TAOK2Q9UL54 1235 aa11.58□□□□□ -0.56
CD44-232ENST00000531118 ADAMTSL1Q8N6G6 1762 aa11.57□□□□□ -0.56
CD44-232ENST00000531118 NFKBIEO00221 500 aa11.57□□□□□ -0.56
CD44-232ENST00000531118 RIOK3O14730 519 aaKnown RBP11.57□□□□□ -0.56
CD44-232ENST00000531118 FYB1O15117 783 aa11.57□□□□□ -0.56
CD44-232ENST00000531118 RGL2O15211 777 aa11.57□□□□□ -0.56
CD44-232ENST00000531118 MAP3K13O43283 966 aa11.57□□□□□ -0.56
CD44-232ENST00000531118 IFNL2Q8IZJ0 200 aa11.57□□□□□ -0.56
CD44-232ENST00000531118 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.57□□□□□ -0.56
CD44-232ENST00000531118 PCDHB13Q9Y5F0 798 aa11.57□□□□□ -0.56
CD44-232ENST00000531118 EMILIN1Q9Y6C2 1016 aa11.57□□□□□ -0.56
CD44-232ENST00000531118 POTEIP0CG38 1075 aa11.56□□□□□ -0.56
CD44-232ENST00000531118 POTEJP0CG39 1038 aa11.56□□□□□ -0.56
CD44-232ENST00000531118 LBX1P52954 281 aa11.56□□□□□ -0.56
CD44-232ENST00000531118 SCN7AQ01118 1682 aa11.55□□□□□ -0.56
CD44-232ENST00000531118 CARMIL3Q8ND23 1372 aa11.55□□□□□ -0.56
CD44-232ENST00000531118 HSPA8P11142 646 aaKnown RBP11.55□□□□□ -0.56
CD44-232ENST00000531118 RNF25Q96BH1 459 aaPredicted RBP11.55□□□□□ -0.56
CD44-232ENST00000531118 SIN3AQ96ST3 1273 aa11.55□□□□□ -0.56
CD44-232ENST00000531118 PASKQ96RG2 1323 aa11.55□□□□□ -0.56
CD44-232ENST00000531118 SCN11AQ9UI33 1791 aa11.54□□□□□ -0.56
CD44-232ENST00000531118 CRKLP46109 303 aaKnown RBP11.54□□□□□ -0.56
CD44-232ENST00000531118 VEGFBP49765 207 aa11.54□□□□□ -0.56
CD44-232ENST00000531118 MLLT1Q03111 559 aaPredicted RBP11.54□□□□□ -0.56
CD44-232ENST00000531118 TESK2Q96S53 571 aa11.54□□□□□ -0.56
CD44-232ENST00000531118 WBP1LQ9NX94 342 aa11.54□□□□□ -0.56
CD44-232ENST00000531118 LTBP1Q14766 1721 aa11.54□□□□□ -0.56
CD44-232ENST00000531118 EYA1Q99502 592 aa11.52□□□□□ -0.57
CD44-232ENST00000531118 ERVV-2B6SEH9 535 aa11.51□□□□□ -0.57
CD44-232ENST00000531118 TM4SF1P30408 202 aa11.51□□□□□ -0.57
CD44-232ENST00000531118 RGS19P49795 217 aa11.51□□□□□ -0.57
CD44-232ENST00000531118 DPY19L2Q6NUT2 758 aa11.51□□□□□ -0.57
CD44-232ENST00000531118 TTLL6Q8N841 843 aa11.51□□□□□ -0.57
CD44-232ENST00000531118 NEUROD1Q13562 356 aa11.5□□□□□ -0.57
CD44-232ENST00000531118 USPL1Q5W0Q7 1092 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms