RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 CCNL1Q9UK58 526 aaPredicted RBP12.09□□□□□ -0.47
SSBP3-212ENST00000528930 NFAT5O94916 1531 aa12.09□□□□□ -0.47
SSBP3-212ENST00000528930 RNF25Q96BH1 459 aaPredicted RBP12.08□□□□□ -0.48
SSBP3-212ENST00000528930 ZC3H4Q9UPT8 1303 aaKnown RBP12.08□□□□□ -0.48
SSBP3-212ENST00000528930 KDM6AO15550 1401 aaPredicted RBP12.07□□□□□ -0.48
SSBP3-212ENST00000528930 ARHGEF25Q86VW2 580 aa12.07□□□□□ -0.48
SSBP3-212ENST00000528930 MS4A4AQ96JQ5 239 aa12.07□□□□□ -0.48
SSBP3-212ENST00000528930 LTN1O94822 1766 aa12.07□□□□□ -0.48
SSBP3-212ENST00000528930 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.06□□□□□ -0.48
SSBP3-212ENST00000528930 CSB-PGBD3P0DP91 1061 aa12.06□□□□□ -0.48
SSBP3-212ENST00000528930 VEGFAP15692 232 aaPredicted RBP12.06□□□□□ -0.48
SSBP3-212ENST00000528930 ZFP91Q96JP5 570 aaPredicted RBP12.06□□□□□ -0.48
SSBP3-212ENST00000528930 CDK19Q9BWU1 502 aa12.06□□□□□ -0.48
SSBP3-212ENST00000528930 FAM208AQ9UK61 1670 aaKnown RBP12.06□□□□□ -0.48
SSBP3-212ENST00000528930 CENPJQ9HC77 1338 aaPredicted RBP12.06□□□□□ -0.48
SSBP3-212ENST00000528930 RIMBP2O15034 1052 aa12.05□□□□□ -0.48
SSBP3-212ENST00000528930 TGFB2P61812 414 aa12.05□□□□□ -0.48
SSBP3-212ENST00000528930 PCGF6Q9BYE7 350 aa12.05□□□□□ -0.48
SSBP3-212ENST00000528930 RNF181Q9P0P0 153 aa12.05□□□□□ -0.48
SSBP3-212ENST00000528930 DICER1Q9UPY3 1922 aaKnown RBP12.05□□□□□ -0.48
SSBP3-212ENST00000528930 C4AP0C0L4 1744 aa12.05□□□□□ -0.48
SSBP3-212ENST00000528930 LTBP1Q14766 1721 aa12.05□□□□□ -0.48
SSBP3-212ENST00000528930 ROCK2O75116 1388 aaKnown RBP12.05□□□□□ -0.48
SSBP3-212ENST00000528930 TONSLQ96HA7 1378 aa12.05□□□□□ -0.48
SSBP3-212ENST00000528930 RIOK3O14730 519 aaKnown RBP12.04□□□□□ -0.48
SSBP3-212ENST00000528930 IL2RBP14784 551 aa12.04□□□□□ -0.48
SSBP3-212ENST00000528930 MAP2P11137 1827 aaKnown RBP12.03□□□□□ -0.48
SSBP3-212ENST00000528930 VEGFBP49765 207 aa12.03□□□□□ -0.48
SSBP3-212ENST00000528930 AMIGO3Q86WK7 504 aa12.03□□□□□ -0.48
SSBP3-212ENST00000528930 CASP8AP2Q9UKL3 1982 aa12.03□□□□□ -0.48
SSBP3-212ENST00000528930 NSD3Q9BZ95 1437 aa12.03□□□□□ -0.48
SSBP3-212ENST00000528930 SOX12O15370 315 aa12.02□□□□□ -0.49
SSBP3-212ENST00000528930 FCHSD2O94868 740 aa12.02□□□□□ -0.49
SSBP3-212ENST00000528930 DCAF5Q96JK2 942 aa12.02□□□□□ -0.49
SSBP3-212ENST00000528930 A0A0G2JLW4 131 aa12.01□□□□□ -0.49
SSBP3-212ENST00000528930 PRIM1P49642 420 aaKnown RBP12.01□□□□□ -0.49
SSBP3-212ENST00000528930 NLRP6P59044 892 aa12.01□□□□□ -0.49
SSBP3-212ENST00000528930 GPR153Q6NV75 609 aa12.01□□□□□ -0.49
SSBP3-212ENST00000528930 ITGB4P16144 1822 aa12□□□□□ -0.49
SSBP3-212ENST00000528930 GLTPD2A6NH11 291 aa12□□□□□ -0.49
SSBP3-212ENST00000528930 RNF166Q96A37 237 aaPredicted RBP12□□□□□ -0.49
SSBP3-212ENST00000528930 USP47Q96K76 1375 aa12□□□□□ -0.49
SSBP3-212ENST00000528930 ADAMTS7Q9UKP4 1686 aa12□□□□□ -0.49
SSBP3-212ENST00000528930 POTECB2RU33 542 aa11.99□□□□□ -0.49
SSBP3-212ENST00000528930 PASKQ96RG2 1323 aa11.99□□□□□ -0.49
SSBP3-212ENST00000528930 DLEC1Q9Y238 1755 aa11.99□□□□□ -0.49
SSBP3-212ENST00000528930 DPEP1P16444 411 aa11.98□□□□□ -0.49
SSBP3-212ENST00000528930 HMGB2P26583 209 aaKnown RBP11.98□□□□□ -0.49
SSBP3-212ENST00000528930 SRPK2P78362 688 aaKnown RBP11.98□□□□□ -0.49
SSBP3-212ENST00000528930 ARSIQ5FYB1 569 aa11.98□□□□□ -0.49
SSBP3-212ENST00000528930 SMIM5Q71RC9 77 aa11.98□□□□□ -0.49
SSBP3-212ENST00000528930 SYTL4Q96C24 671 aaPredicted RBP11.98□□□□□ -0.49
SSBP3-212ENST00000528930 CFAP44Q96MT7 982 aa11.98□□□□□ -0.49
SSBP3-212ENST00000528930 CARD11Q9BXL7 1154 aa11.98□□□□□ -0.49
SSBP3-212ENST00000528930 CLSPNQ9HAW4 1339 aa11.97□□□□□ -0.49
SSBP3-212ENST00000528930 KCNA3P22001 575 aa11.97□□□□□ -0.49
SSBP3-212ENST00000528930 MAP2K1Q02750 393 aaPredicted RBP11.97□□□□□ -0.49
SSBP3-212ENST00000528930 KHSRPQ92945 711 aaKnown RBP eCLIP11.97□□□□□ -0.49
SSBP3-212ENST00000528930 EVC2Q86UK5 1308 aa11.96□□□□□ -0.49
SSBP3-212ENST00000528930 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.96□□□□□ -0.49
SSBP3-212ENST00000528930 ZNF687Q8N1G0 1237 aa11.96□□□□□ -0.49
SSBP3-212ENST00000528930 KCNH5Q8NCM2 988 aa11.96□□□□□ -0.49
SSBP3-212ENST00000528930 MCOLN1Q9GZU1 580 aa11.96□□□□□ -0.49
SSBP3-212ENST00000528930 SCN4AP35499 1836 aa11.95□□□□□ -0.5
SSBP3-212ENST00000528930 ADAMTSL1Q8N6G6 1762 aa11.95□□□□□ -0.5
SSBP3-212ENST00000528930 SBNO2Q9Y2G9 1366 aa11.95□□□□□ -0.5
SSBP3-212ENST00000528930 MMP10P09238 476 aa11.95□□□□□ -0.5
SSBP3-212ENST00000528930 SSFA2P28290 1259 aa11.95□□□□□ -0.5
SSBP3-212ENST00000528930 ZSWIM6Q9HCJ5 1215 aa11.95□□□□□ -0.5
SSBP3-212ENST00000528930 CABP1Q9NZU7 370 aa11.95□□□□□ -0.5
SSBP3-212ENST00000528930 RGPD2P0DJD1 1756 aa11.95□□□□□ -0.5
SSBP3-212ENST00000528930 DDX54Q8TDD1 881 aaKnown RBP11.94□□□□□ -0.5
SSBP3-212ENST00000528930 GCC1Q96CN9 775 aa11.94□□□□□ -0.5
SSBP3-212ENST00000528930 TIMELESSQ9UNS1 1208 aa11.94□□□□□ -0.5
SSBP3-212ENST00000528930 RASSF10A6NK89 507 aa11.93□□□□□ -0.5
SSBP3-212ENST00000528930 AK7Q96M32 723 aa11.93□□□□□ -0.5
SSBP3-212ENST00000528930 NLRP2Q9NX02 1062 aa11.93□□□□□ -0.5
SSBP3-212ENST00000528930 PALLDQ8WX93 1383 aa11.92□□□□□ -0.5
SSBP3-212ENST00000528930 PHF14O94880 888 aa11.92□□□□□ -0.5
SSBP3-212ENST00000528930 PIM2Q9P1W9 311 aa11.92□□□□□ -0.5
SSBP3-212ENST00000528930 TMEM88BA6NKF7 163 aa11.91□□□□□ -0.5
SSBP3-212ENST00000528930 TESK2Q96S53 571 aa11.91□□□□□ -0.5
SSBP3-212ENST00000528930 WDR33Q9C0J8 1336 aaKnown RBP11.9□□□□□ -0.5
SSBP3-212ENST00000528930 ST20-MTHFSA0A0A6YYL1 179 aa11.9□□□□□ -0.5
SSBP3-212ENST00000528930 DLL1O00548 723 aa11.9□□□□□ -0.5
SSBP3-212ENST00000528930 FER1L6Q2WGJ9 1857 aa11.9□□□□□ -0.5
SSBP3-212ENST00000528930 DALRD3Q5D0E6 543 aaKnown RBP11.9□□□□□ -0.5
SSBP3-212ENST00000528930 HABP4Q5JVS0 413 aaKnown RBP11.9□□□□□ -0.5
SSBP3-212ENST00000528930 ANKRD13DQ6ZTN6 518 aa11.9□□□□□ -0.5
SSBP3-212ENST00000528930 MON2Q7Z3U7 1717 aa11.9□□□□□ -0.5
SSBP3-212ENST00000528930 LMNB1P20700 586 aa11.89□□□□□ -0.51
SSBP3-212ENST00000528930 RASSF7Q02833 373 aa11.89□□□□□ -0.51
SSBP3-212ENST00000528930 CCDC87Q9NVE4 849 aa11.89□□□□□ -0.51
SSBP3-212ENST00000528930 TRPM7Q96QT4 1865 aa11.89□□□□□ -0.51
SSBP3-212ENST00000528930 CUL9Q8IWT3 2517 aa11.88□□□□□ -0.51
SSBP3-212ENST00000528930 CCER1Q8TC90 406 aaPredicted RBP11.88□□□□□ -0.51
SSBP3-212ENST00000528930 COL5A3P25940 1745 aaPredicted RBP11.87□□□□□ -0.51
SSBP3-212ENST00000528930 ITGBL1O95965 494 aaPredicted RBP11.87□□□□□ -0.51
SSBP3-212ENST00000528930 SOX10P56693 466 aa11.87□□□□□ -0.51
SSBP3-212ENST00000528930 DEFB115Q30KQ5 88 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms