RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 MTMR3Q13615 1198 aa5.66□□□□□ -1.5
CD44-229ENST00000528672 NBPF15Q8N660 670 aa5.66□□□□□ -1.5
CD44-229ENST00000528672 GPR161Q8N6U8 529 aaKnown RBP5.66□□□□□ -1.5
CD44-229ENST00000528672 NANOS1Q8WY41 292 aaKnown RBP5.66□□□□□ -1.5
CD44-229ENST00000528672 SLC4A9Q96Q91 983 aa5.66□□□□□ -1.5
CD44-229ENST00000528672 FHDC1Q9C0D6 1143 aaPredicted RBP5.66□□□□□ -1.5
CD44-229ENST00000528672 ANO2Q9NQ90 1003 aa5.66□□□□□ -1.5
CD44-229ENST00000528672 SLC35F4A4IF30 521 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 M0R2N6 131 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 MEN1O00255 615 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 BACH1O14867 736 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 C21orf2O43822 256 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 GTF2E1P29083 439 aaPredicted RBP5.65□□□□□ -1.5
CD44-229ENST00000528672 MTFR1Q15390 333 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 OCLNQ16625 522 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 FAM26DQ5JW98 314 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 SIX5Q8N196 739 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 LARGE2Q8N3Y3 721 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 CNTNAP3BQ96NU0 1288 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 HINFPQ9BQA5 517 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 CNTNAP3Q9BZ76 1288 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 TSPAN10Q9H1Z9 355 aaPredicted RBP5.65□□□□□ -1.5
CD44-229ENST00000528672 SEPT3Q9UH03 358 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 DYRK1BQ9Y463 629 aa5.65□□□□□ -1.5
CD44-229ENST00000528672 SENP3-EIF4A1A0A087X0R7 540 aa5.64□□□□□ -1.51
CD44-229ENST00000528672 SERPINB4P48594 390 aa5.64□□□□□ -1.51
CD44-229ENST00000528672 EPHA4P54764 986 aa5.64□□□□□ -1.51
CD44-229ENST00000528672 CENPCQ03188 943 aa5.64□□□□□ -1.51
CD44-229ENST00000528672 FKBP5Q13451 457 aaPredicted RBP5.64□□□□□ -1.51
CD44-229ENST00000528672 SLC27A3Q5K4L6 730 aa5.64□□□□□ -1.51
CD44-229ENST00000528672 TAS1R3Q7RTX0 852 aa5.64□□□□□ -1.51
CD44-229ENST00000528672 PPARGC1BQ86YN6 1023 aaKnown RBP5.64□□□□□ -1.51
CD44-229ENST00000528672 CCDC155Q8N6L0 562 aa5.64□□□□□ -1.51
CD44-229ENST00000528672 IGHA1P01876 353 aa5.63□□□□□ -1.51
CD44-229ENST00000528672 ITGA6P23229 1130 aa5.63□□□□□ -1.51
CD44-229ENST00000528672 PDE4CQ08493 712 aa5.63□□□□□ -1.51
CD44-229ENST00000528672 ELOAQ14241 798 aaKnown RBP5.63□□□□□ -1.51
CD44-229ENST00000528672 LBRQ14739 615 aaKnown RBP5.63□□□□□ -1.51
CD44-229ENST00000528672 NAA30Q147X3 362 aaPredicted RBP5.63□□□□□ -1.51
CD44-229ENST00000528672 GNASQ5JWF2 1037 aa5.63□□□□□ -1.51
CD44-229ENST00000528672 NBPF10Q6P3W6 841 aaKnown RBP5.63□□□□□ -1.51
CD44-229ENST00000528672 RHBDD1Q8TEB9 315 aa5.63□□□□□ -1.51
CD44-229ENST00000528672 CHMP7Q8WUX9 453 aaPredicted RBP5.63□□□□□ -1.51
CD44-229ENST00000528672 ZSCAN10Q96SZ4 725 aaPredicted RBP5.63□□□□□ -1.51
CD44-229ENST00000528672 GZF1Q9H116 711 aaPredicted RBP5.63□□□□□ -1.51
CD44-229ENST00000528672 A0A1B0GTH6 734 aa5.62□□□□□ -1.51
CD44-229ENST00000528672 FIGNL2A6NMB9 653 aa5.62□□□□□ -1.51
CD44-229ENST00000528672 ATP2B4P23634 1241 aa5.62□□□□□ -1.51
CD44-229ENST00000528672 SSFA2P28290 1259 aa5.62□□□□□ -1.51
CD44-229ENST00000528672 SMTNP53814 917 aa5.62□□□□□ -1.51
CD44-229ENST00000528672 SEC13P55735 322 aa5.62□□□□□ -1.51
CD44-229ENST00000528672 ZNF211Q13398 564 aaPredicted RBP5.62□□□□□ -1.51
CD44-229ENST00000528672 TLR1Q15399 786 aa5.62□□□□□ -1.51
CD44-229ENST00000528672 ZNF385CQ66K41 422 aaPredicted RBP5.62□□□□□ -1.51
CD44-229ENST00000528672 GPAT2Q6NUI2 795 aa5.62□□□□□ -1.51
CD44-229ENST00000528672 C1orf216Q8TAB5 229 aa5.62□□□□□ -1.51
CD44-229ENST00000528672 COL25A1Q9BXS0 654 aaPredicted RBP5.62□□□□□ -1.51
CD44-229ENST00000528672 SAP130Q9H0E3 1048 aa5.62□□□□□ -1.51
CD44-229ENST00000528672 DNMT3AQ9Y6K1 912 aaPredicted RBP5.62□□□□□ -1.51
CD44-229ENST00000528672 IVNS1ABPQ9Y6Y0 642 aa5.62□□□□□ -1.51
CD44-229ENST00000528672 H7C1W4 665 aa5.61□□□□□ -1.51
CD44-229ENST00000528672 CDK2AP1O14519 115 aa5.61□□□□□ -1.51
CD44-229ENST00000528672 PHKA2P46019 1235 aa5.61□□□□□ -1.51
CD44-229ENST00000528672 ZDHHC1Q8WTX9 485 aa5.61□□□□□ -1.51
CD44-229ENST00000528672 SCG3Q8WXD2 468 aaKnown RBP5.61□□□□□ -1.51
CD44-229ENST00000528672 ARHGEF15O94989 841 aa5.6□□□□□ -1.51
CD44-229ENST00000528672 RHOQP17081 205 aa5.6□□□□□ -1.51
CD44-229ENST00000528672 IRS1P35568 1242 aa5.6□□□□□ -1.51
CD44-229ENST00000528672 TMEM214Q6NUQ4 689 aaKnown RBP5.6□□□□□ -1.51
CD44-229ENST00000528672 PRICKLE2Q7Z3G6 844 aa5.6□□□□□ -1.51
CD44-229ENST00000528672 TRIM22Q8IYM9 498 aa5.6□□□□□ -1.51
CD44-229ENST00000528672 ZNF295-AS1Q8N0V1 137 aa5.6□□□□□ -1.51
CD44-229ENST00000528672 SVOPQ8N4V2 548 aa5.6□□□□□ -1.51
CD44-229ENST00000528672 NIFKQ9BYG3 293 aaKnown RBP5.6□□□□□ -1.51
CD44-229ENST00000528672 SCHIP1Q9P0W5 487 aaPredicted RBP5.6□□□□□ -1.51
CD44-229ENST00000528672 IQSEC3Q9UPP2 1182 aaPredicted RBP5.6□□□□□ -1.51
CD44-229ENST00000528672 GPC6Q9Y625 555 aaPredicted RBP5.6□□□□□ -1.51
CD44-229ENST00000528672 A6NJY4 79 aa5.59□□□□□ -1.51
CD44-229ENST00000528672 F11P03951 625 aa5.59□□□□□ -1.51
CD44-229ENST00000528672 SLURP2P0DP57 97 aa5.59□□□□□ -1.51
CD44-229ENST00000528672 HIRAP54198 1017 aaPredicted RBP5.59□□□□□ -1.51
CD44-229ENST00000528672 FOXK2Q01167 660 aa5.59□□□□□ -1.51
CD44-229ENST00000528672 RNFT1Q5M7Z0 435 aa5.59□□□□□ -1.51
CD44-229ENST00000528672 POTEAQ6S8J7 498 aa5.59□□□□□ -1.51
CD44-229ENST00000528672 SLC9A9Q8IVB4 645 aa5.59□□□□□ -1.51
CD44-229ENST00000528672 CLP1Q92989 425 aaKnown RBP5.59□□□□□ -1.51
CD44-229ENST00000528672 TIMMDC1Q9NPL8 285 aa5.59□□□□□ -1.51
CD44-229ENST00000528672 ZDHHC3Q9NYG2 299 aa5.59□□□□□ -1.51
CD44-229ENST00000528672 CXXC1Q9P0U4 656 aaPredicted RBP5.59□□□□□ -1.51
CD44-229ENST00000528672 RBM19Q9Y4C8 960 aaKnown RBP5.59□□□□□ -1.51
CD44-229ENST00000528672 ATAD2Q6PL18 1390 aa5.58□□□□□ -1.52
CD44-229ENST00000528672 WEE1P30291 646 aa5.58□□□□□ -1.52
CD44-229ENST00000528672 POU4F2Q12837 409 aa5.58□□□□□ -1.52
CD44-229ENST00000528672 NOM1Q5C9Z4 860 aaKnown RBP5.58□□□□□ -1.52
CD44-229ENST00000528672 TMCO4Q5TGY1 634 aa5.58□□□□□ -1.52
CD44-229ENST00000528672 KANK3Q6NY19 840 aa5.58□□□□□ -1.52
CD44-229ENST00000528672 STAG2Q8N3U4 1231 aa5.58□□□□□ -1.52
CD44-229ENST00000528672 WHAMMQ8TF30 809 aa5.58□□□□□ -1.52
CD44-229ENST00000528672 NGLY1Q96IV0 654 aa5.58□□□□□ -1.52
CD44-229ENST00000528672 CRISPLD1Q9H336 500 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms