RNA–Protein interactions for RNA: ENST00000527644.1

TSPAN4-217, Transcript of tetraspanin 4, humanhuman

TSL 2

Gene TSPAN4, Length 968 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-217ENST00000527644 NLGN2Q8NFZ4 835 aa34.81■■■■□ 3.16
TSPAN4-217ENST00000527644 USP42Q9H9J4 1324 aaKnown RBP34.81■■■■□ 3.16
TSPAN4-217ENST00000527644 SRP68Q9UHB9 627 aaKnown RBP34.78■■■■□ 3.16
TSPAN4-217ENST00000527644 ZPR1O75312 459 aa34.77■■■■□ 3.16
TSPAN4-217ENST00000527644 CANXP27824 592 aaKnown RBP34.77■■■■□ 3.16
TSPAN4-217ENST00000527644 RIPK4P57078 832 aa34.77■■■■□ 3.16
TSPAN4-217ENST00000527644 PNISRQ8TF01 805 aaKnown RBP34.77■■■■□ 3.16
TSPAN4-217ENST00000527644 COL15A1P39059 1388 aa34.76■■■■□ 3.16
TSPAN4-217ENST00000527644 ADAMTS8Q9UP79 889 aa34.76■■■■□ 3.16
TSPAN4-217ENST00000527644 TMPOP42166 694 aaKnown RBP34.75■■■■□ 3.15
TSPAN4-217ENST00000527644 SNRPA1P09661 255 aaKnown RBP34.74■■■■□ 3.15
TSPAN4-217ENST00000527644 RUNDC1Q96C34 613 aa34.74■■■■□ 3.15
TSPAN4-217ENST00000527644 EIF5P55010 431 aaKnown RBP34.73■■■■□ 3.15
TSPAN4-217ENST00000527644 FKBP8Q14318 412 aa34.73■■■■□ 3.15
TSPAN4-217ENST00000527644 CCDC146Q8IYE0 955 aa34.73■■■■□ 3.15
TSPAN4-217ENST00000527644 THUMPD2Q9BTF0 503 aaKnown RBP34.73■■■■□ 3.15
TSPAN4-217ENST00000527644 MIS18AQ9NYP9 233 aa34.73■■■■□ 3.15
TSPAN4-217ENST00000527644 NARFQ9UHQ1 456 aa34.73■■■■□ 3.15
TSPAN4-217ENST00000527644 LMOD3Q0VAK6 560 aa34.72■■■■□ 3.15
TSPAN4-217ENST00000527644 GPR162Q16538 588 aa34.72■■■■□ 3.15
TSPAN4-217ENST00000527644 USPL1Q5W0Q7 1092 aa34.72■■■■□ 3.15
TSPAN4-217ENST00000527644 PARP3Q9Y6F1 533 aa34.72■■■■□ 3.15
TSPAN4-217ENST00000527644 A0A087WZG4 1122 aa34.71■■■■□ 3.15
TSPAN4-217ENST00000527644 USP16Q9Y5T5 823 aa34.71■■■■□ 3.15
TSPAN4-217ENST00000527644 A1BGP04217 495 aa34.69■■■■□ 3.14
TSPAN4-217ENST00000527644 IL6STP40189 918 aaPredicted RBP34.69■■■■□ 3.14
TSPAN4-217ENST00000527644 PRAMEF22A3QJZ6 481 aa34.67■■■■□ 3.14
TSPAN4-217ENST00000527644 PELP1Q8IZL8 1130 aaKnown RBP34.66■■■■□ 3.14
TSPAN4-217ENST00000527644 RRP7AQ9Y3A4 280 aaKnown RBP34.66■■■■□ 3.14
TSPAN4-217ENST00000527644 TM4SF1P30408 202 aa34.65■■■■□ 3.14
TSPAN4-217ENST00000527644 NPM2Q86SE8 214 aaKnown RBP34.65■■■■□ 3.14
TSPAN4-217ENST00000527644 KDM3BQ7LBC6 1761 aa34.64■■■■□ 3.14
TSPAN4-217ENST00000527644 NEUROD2Q15784 382 aa34.64■■■■□ 3.14
TSPAN4-217ENST00000527644 UTRNP46939 3433 aa34.64■■■■□ 3.14
TSPAN4-217ENST00000527644 ANP32CO43423 234 aa34.63■■■■□ 3.13
TSPAN4-217ENST00000527644 ZNF330Q9Y3S2 320 aaPredicted RBP34.63■■■■□ 3.13
TSPAN4-217ENST00000527644 EIF4A1P60842 406 aaKnown RBP34.62■■■■□ 3.13
TSPAN4-217ENST00000527644 DDR1Q08345 913 aa34.62■■■■□ 3.13
TSPAN4-217ENST00000527644 BCL2L12Q9HB09 334 aa34.62■■■■□ 3.13
TSPAN4-217ENST00000527644 BABAM1Q9NWV8 329 aa34.62■■■■□ 3.13
TSPAN4-217ENST00000527644 YY1P25490 414 aa34.61■■■■□ 3.13
TSPAN4-217ENST00000527644 TGFB2P61812 414 aa34.61■■■■□ 3.13
TSPAN4-217ENST00000527644 C10orf71Q711Q0 1435 aa34.61■■■■□ 3.13
TSPAN4-217ENST00000527644 POLRMTO00411 1230 aaKnown RBP34.6■■■■□ 3.13
TSPAN4-217ENST00000527644 TSPYL4Q9UJ04 414 aa34.6■■■■□ 3.13
TSPAN4-217ENST00000527644 KIF13BQ9NQT8 1826 aa34.6■■■■□ 3.13
TSPAN4-217ENST00000527644 GIGYF1O75420 1035 aaPredicted RBP34.59■■■■□ 3.13
TSPAN4-217ENST00000527644 TBC1D2BQ9UPU7 963 aa34.59■■■■□ 3.13
TSPAN4-217ENST00000527644 GRIN3BO60391 1043 aa34.58■■■■□ 3.13
TSPAN4-217ENST00000527644 YBX3P16989 372 aaKnown RBP eCLIP34.58■■■■□ 3.13
TSPAN4-217ENST00000527644 NFIXQ14938 502 aa34.58■■■■□ 3.13
TSPAN4-217ENST00000527644 TRIM35Q9UPQ4 493 aa34.58■■■■□ 3.13
TSPAN4-217ENST00000527644 GOLGB1Q14789 3259 aaKnown RBP34.56■■■■□ 3.12
TSPAN4-217ENST00000527644 PIP4K2AP48426 406 aaPredicted RBP34.56■■■■□ 3.12
TSPAN4-217ENST00000527644 CCDC184Q52MB2 194 aa34.56■■■■□ 3.12
TSPAN4-217ENST00000527644 NBPF26B4DH59 902 aa34.54■■■■□ 3.12
TSPAN4-217ENST00000527644 NBPF10Q6P3W6 841 aaKnown RBP34.54■■■■□ 3.12
TSPAN4-217ENST00000527644 DZIP3Q86Y13 1208 aaKnown RBP34.54■■■■□ 3.12
TSPAN4-217ENST00000527644 NBPF15Q8N660 670 aa34.54■■■■□ 3.12
TSPAN4-217ENST00000527644 PXDNLA1KZ92 1463 aa34.53■■■■□ 3.12
TSPAN4-217ENST00000527644 CAMTA2O94983 1202 aa34.52■■■■□ 3.12
TSPAN4-217ENST00000527644 LAMB4A4D0S4 1761 aa34.51■■■■□ 3.12
TSPAN4-217ENST00000527644 APAF1O14727 1248 aa34.51■■■■□ 3.12
TSPAN4-217ENST00000527644 SCN7AQ01118 1682 aa34.5■■■■□ 3.11
TSPAN4-217ENST00000527644 CHD4Q14839 1912 aa34.5■■■■□ 3.11
TSPAN4-217ENST00000527644 A0A0G2JLW4 131 aa34.5■■■■□ 3.11
TSPAN4-217ENST00000527644 SERPINB2P05120 415 aa34.5■■■■□ 3.11
TSPAN4-217ENST00000527644 TBC1D9BQ66K14 1250 aa34.49■■■■□ 3.11
TSPAN4-217ENST00000527644 BICDL1Q6ZP65 573 aa34.49■■■■□ 3.11
TSPAN4-217ENST00000527644 KIAA1551Q9HCM1 1747 aa34.48■■■■□ 3.11
TSPAN4-217ENST00000527644 CHL1O00533 1208 aa34.48■■■■□ 3.11
TSPAN4-217ENST00000527644 DPEP1P16444 411 aa34.48■■■■□ 3.11
TSPAN4-217ENST00000527644 MRS2Q9HD23 443 aa34.47■■■■□ 3.11
TSPAN4-217ENST00000527644 WWC3Q9ULE0 1092 aa34.47■■■■□ 3.11
TSPAN4-217ENST00000527644 CLEC4GQ6UXB4 293 aa34.46■■■■□ 3.11
TSPAN4-217ENST00000527644 N4BP2Q86UW6 1770 aaPredicted RBP34.46■■■■□ 3.11
TSPAN4-217ENST00000527644 NRXN2Q9P2S2 1712 aa34.45■■■■□ 3.11
TSPAN4-217ENST00000527644 LAS1LQ9Y4W2 734 aaKnown RBP34.45■■■■□ 3.11
TSPAN4-217ENST00000527644 AFDNP55196 1824 aaKnown RBP34.44■■■■□ 3.1
TSPAN4-217ENST00000527644 RGL2O15211 777 aa34.44■■■■□ 3.1
TSPAN4-217ENST00000527644 ZNF652Q9Y2D9 606 aa34.44■■■■□ 3.1
TSPAN4-217ENST00000527644 SETDB2Q96T68 719 aa34.43■■■■□ 3.1
TSPAN4-217ENST00000527644 ERBB4Q15303 1308 aa34.43■■■■□ 3.1
TSPAN4-217ENST00000527644 BCORQ6W2J9 1755 aa34.43■■■■□ 3.1
TSPAN4-217ENST00000527644 CARMIL3Q8ND23 1372 aa34.42■■■■□ 3.1
TSPAN4-217ENST00000527644 KCNA3P22001 575 aa34.42■■■■□ 3.1
TSPAN4-217ENST00000527644 CFAP44Q96MT7 982 aa34.41■■■■□ 3.1
TSPAN4-217ENST00000527644 CALD1Q05682 793 aaKnown RBP34.39■■■■□ 3.1
TSPAN4-217ENST00000527644 PIM2Q9P1W9 311 aa34.39■■■■□ 3.1
TSPAN4-217ENST00000527644 BCS1LQ9Y276 419 aa34.39■■■■□ 3.1
TSPAN4-217ENST00000527644 EIF2S2P20042 333 aaKnown RBP34.38■■■■□ 3.09
TSPAN4-217ENST00000527644 NGEFQ8N5V2 710 aa34.38■■■■□ 3.09
TSPAN4-217ENST00000527644 MYL6BP14649 208 aa34.37■■■■□ 3.09
TSPAN4-217ENST00000527644 CHRNA5P30532 468 aa34.36■■■■□ 3.09
TSPAN4-217ENST00000527644 BRCA1P38398 1863 aaKnown RBP34.35■■■■□ 3.09
TSPAN4-217ENST00000527644 ERVV-1B6SEH8 477 aa34.34■■■■□ 3.09
TSPAN4-217ENST00000527644 ZNF853P0CG23 659 aa34.34■■■■□ 3.09
TSPAN4-217ENST00000527644 PRR5LQ6MZQ0 368 aa34.34■■■■□ 3.09
TSPAN4-217ENST00000527644 IFT57Q9NWB7 429 aa34.34■■■■□ 3.09
TSPAN4-217ENST00000527644 KIF6Q6ZMV9 814 aa34.33■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 219.4 ms