RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 PDIA6Q15084 440 aa19.73■□□□□ 0.75
USH1C-204ENST00000526313 KSR2Q6VAB6 950 aa19.73■□□□□ 0.75
USH1C-204ENST00000526313 NFATC2IPQ8NCF5 419 aa19.73■□□□□ 0.75
USH1C-204ENST00000526313 DDX21Q9NR30 783 aaKnown RBP eCLIP19.73■□□□□ 0.75
USH1C-204ENST00000526313 ABCA3Q99758 1704 aa19.72■□□□□ 0.75
USH1C-204ENST00000526313 PARP4Q9UKK3 1724 aaKnown RBP19.72■□□□□ 0.75
USH1C-204ENST00000526313 ALDH1L1O75891 902 aa19.72■□□□□ 0.75
USH1C-204ENST00000526313 EXOC6BQ9Y2D4 811 aa19.72■□□□□ 0.75
USH1C-204ENST00000526313 NHSL1Q5SYE7 1610 aa19.72■□□□□ 0.75
USH1C-204ENST00000526313 LRRCC1Q9C099 1032 aa19.71■□□□□ 0.75
USH1C-204ENST00000526313 PRDM11Q9NQV5 511 aa19.71■□□□□ 0.75
USH1C-204ENST00000526313 NBPF7P0C2Y1 421 aaPredicted RBP19.7■□□□□ 0.74
USH1C-204ENST00000526313 PDE1AP54750 535 aa19.7■□□□□ 0.74
USH1C-204ENST00000526313 SLC39A6Q13433 755 aa19.7■□□□□ 0.74
USH1C-204ENST00000526313 COL5A2P05997 1499 aaPredicted RBP19.7■□□□□ 0.74
USH1C-204ENST00000526313 C5P01031 1676 aa19.7■□□□□ 0.74
USH1C-204ENST00000526313 APBB1O00213 710 aa19.7■□□□□ 0.74
USH1C-204ENST00000526313 SDSP20132 328 aa19.7■□□□□ 0.74
USH1C-204ENST00000526313 KIF2CQ99661 725 aa19.7■□□□□ 0.74
USH1C-204ENST00000526313 ANTXR1Q9H6X2 564 aa19.7■□□□□ 0.74
USH1C-204ENST00000526313 MAP3K2Q9Y2U5 619 aa19.69■□□□□ 0.74
USH1C-204ENST00000526313 PPP1R42Q7Z4L9 355 aa19.69■□□□□ 0.74
USH1C-204ENST00000526313 SNX21Q969T3 373 aa19.69■□□□□ 0.74
USH1C-204ENST00000526313 MTX1Q13505 466 aa19.68■□□□□ 0.74
USH1C-204ENST00000526313 RTL5Q5HYW3 569 aaPredicted RBP19.68■□□□□ 0.74
USH1C-204ENST00000526313 STAP2Q9UGK3 403 aa19.68■□□□□ 0.74
USH1C-204ENST00000526313 RAB11FIP3O75154 756 aa19.67■□□□□ 0.74
USH1C-204ENST00000526313 ZNF496Q96IT1 587 aaPredicted RBP19.67■□□□□ 0.74
USH1C-204ENST00000526313 TUBGCP6Q96RT7 1819 aa19.67■□□□□ 0.74
USH1C-204ENST00000526313 NFKBIBQ15653 356 aa19.67■□□□□ 0.74
USH1C-204ENST00000526313 CARD10Q9BWT7 1032 aa19.67■□□□□ 0.74
USH1C-204ENST00000526313 UTYO14607 1347 aa19.66■□□□□ 0.74
USH1C-204ENST00000526313 DDX58O95786 925 aaKnown RBP19.66■□□□□ 0.74
USH1C-204ENST00000526313 NKX1-1Q15270 411 aaPredicted RBP19.66■□□□□ 0.74
USH1C-204ENST00000526313 LRP10Q7Z4F1 713 aa19.66■□□□□ 0.74
USH1C-204ENST00000526313 LINS1Q8NG48 757 aa19.66■□□□□ 0.74
USH1C-204ENST00000526313 SNRPA1P09661 255 aaKnown RBP19.65■□□□□ 0.74
USH1C-204ENST00000526313 ZCRB1Q8TBF4 217 aaKnown RBP19.65■□□□□ 0.74
USH1C-204ENST00000526313 TOM1L2Q6ZVM7 507 aa19.64■□□□□ 0.74
USH1C-204ENST00000526313 HDAC5Q9UQL6 1122 aa19.64■□□□□ 0.74
USH1C-204ENST00000526313 GLI3P10071 1580 aa19.64■□□□□ 0.73
USH1C-204ENST00000526313 PCDH11XQ9BZA7 1347 aa19.64■□□□□ 0.73
USH1C-204ENST00000526313 PCDH11YQ9BZA8 1340 aa19.64■□□□□ 0.73
USH1C-204ENST00000526313 FMNL2Q96PY5 1086 aa19.64■□□□□ 0.73
USH1C-204ENST00000526313 AOX1Q06278 1338 aa19.64■□□□□ 0.73
USH1C-204ENST00000526313 SRGAP3O43295 1099 aa19.63■□□□□ 0.73
USH1C-204ENST00000526313 MX1P20591 662 aa19.63■□□□□ 0.73
USH1C-204ENST00000526313 CABP4P57796 275 aa19.63■□□□□ 0.73
USH1C-204ENST00000526313 USP26Q9BXU7 913 aa19.63■□□□□ 0.73
USH1C-204ENST00000526313 ERVV-2B6SEH9 535 aa19.62■□□□□ 0.73
USH1C-204ENST00000526313 TTC5Q8N0Z6 440 aa19.62■□□□□ 0.73
USH1C-204ENST00000526313 SURF6O75683 361 aaKnown RBP19.61■□□□□ 0.73
USH1C-204ENST00000526313 LARP1Q6PKG0 1096 aaKnown RBP19.61■□□□□ 0.73
USH1C-204ENST00000526313 CASC1Q6TDU7 716 aa19.61■□□□□ 0.73
USH1C-204ENST00000526313 USP16Q9Y5T5 823 aa19.61■□□□□ 0.73
USH1C-204ENST00000526313 IL2RBP14784 551 aa19.61■□□□□ 0.73
USH1C-204ENST00000526313 C9orf78Q9NZ63 289 aaPredicted RBP19.61■□□□□ 0.73
USH1C-204ENST00000526313 CWF19L2Q2TBE0 894 aaKnown RBP19.6■□□□□ 0.73
USH1C-204ENST00000526313 HSP90AB4PQ58FF6 505 aa19.6■□□□□ 0.73
USH1C-204ENST00000526313 RHPN1Q8TCX5 695 aa19.6■□□□□ 0.73
USH1C-204ENST00000526313 KIF1BPQ96EK5 621 aa19.6■□□□□ 0.73
USH1C-204ENST00000526313 BCL11AQ9H165 835 aa19.6■□□□□ 0.73
USH1C-204ENST00000526313 SHANK3Q9BYB0 1731 aa19.6■□□□□ 0.73
USH1C-204ENST00000526313 GRM8O00222 908 aa19.6■□□□□ 0.73
USH1C-204ENST00000526313 IGKV5-2P06315 115 aa19.6■□□□□ 0.73
USH1C-204ENST00000526313 HSCBQ8IWL3 235 aa19.6■□□□□ 0.73
USH1C-204ENST00000526313 LAMB4A4D0S4 1761 aa19.59■□□□□ 0.73
USH1C-204ENST00000526313 XAGE3Q8WTP9 111 aa19.59■□□□□ 0.73
USH1C-204ENST00000526313 UBR2Q8IWV8 1755 aa19.59■□□□□ 0.73
USH1C-204ENST00000526313 AIMP1Q12904 312 aaKnown RBP19.58■□□□□ 0.73
USH1C-204ENST00000526313 COPS6Q7L5N1 327 aa19.58■□□□□ 0.73
USH1C-204ENST00000526313 KAZALD1Q96I82 304 aa19.58■□□□□ 0.73
USH1C-204ENST00000526313 METTL22Q9BUU2 404 aaPredicted RBP19.58■□□□□ 0.73
USH1C-204ENST00000526313 SLKQ9H2G2 1235 aaPredicted RBP19.58■□□□□ 0.73
USH1C-204ENST00000526313 RIC3Q7Z5B4 369 aa19.58■□□□□ 0.72
USH1C-204ENST00000526313 PAPPAQ13219 1627 aa19.57■□□□□ 0.72
USH1C-204ENST00000526313 ERBB4Q15303 1308 aa19.57■□□□□ 0.72
USH1C-204ENST00000526313 ERC2O15083 957 aa19.57■□□□□ 0.72
USH1C-204ENST00000526313 MYL6BP14649 208 aa19.57■□□□□ 0.72
USH1C-204ENST00000526313 IL1RAPL2Q9NP60 686 aa19.57■□□□□ 0.72
USH1C-204ENST00000526313 USP42Q9H9J4 1324 aaKnown RBP19.56■□□□□ 0.72
USH1C-204ENST00000526313 NEURL1BA8MQ27 555 aa19.56■□□□□ 0.72
USH1C-204ENST00000526313 REC8O95072 547 aa19.56■□□□□ 0.72
USH1C-204ENST00000526313 TSHZ3Q63HK5 1081 aa19.56■□□□□ 0.72
USH1C-204ENST00000526313 ANKRD13DQ6ZTN6 518 aa19.56■□□□□ 0.72
USH1C-204ENST00000526313 DDIT3P35638 169 aa19.55■□□□□ 0.72
USH1C-204ENST00000526313 SUCLG2Q96I99 432 aa19.55■□□□□ 0.72
USH1C-204ENST00000526313 KCPQ6ZWJ8 1503 aa19.55■□□□□ 0.72
USH1C-204ENST00000526313 FRAT2O75474 233 aaPredicted RBP19.55■□□□□ 0.72
USH1C-204ENST00000526313 EVA1CP58658 441 aa19.55■□□□□ 0.72
USH1C-204ENST00000526313 NEXNQ0ZGT2 675 aa19.55■□□□□ 0.72
USH1C-204ENST00000526313 GCKRQ14397 625 aa19.54■□□□□ 0.72
USH1C-204ENST00000526313 PI4K2BQ8TCG2 481 aa19.54■□□□□ 0.72
USH1C-204ENST00000526313 TNS2Q63HR2 1409 aa19.54■□□□□ 0.72
USH1C-204ENST00000526313 RABEP1Q15276 862 aa19.54■□□□□ 0.72
USH1C-204ENST00000526313 COL15A1P39059 1388 aa19.53■□□□□ 0.72
USH1C-204ENST00000526313 CHMLP26374 656 aa19.53■□□□□ 0.72
USH1C-204ENST00000526313 STRN4Q9NRL3 753 aa19.53■□□□□ 0.72
USH1C-204ENST00000526313 CD2BP2O95400 341 aaKnown RBP19.52■□□□□ 0.72
USH1C-204ENST00000526313 DEKP35659 375 aaKnown RBP19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms