RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PI4KAP1Q8N8J0 262 aa25.88■■□□□ 1.73
VPS28-205ENST00000526204 RHPN1Q8TCX5 695 aa25.88■■□□□ 1.73
VPS28-205ENST00000526204 OVOS2A0A0G2JMS6 1433 aa25.88■■□□□ 1.73
VPS28-205ENST00000526204 LMO7Q8WWI1 1683 aa25.87■■□□□ 1.73
VPS28-205ENST00000526204 SRGAP3O43295 1099 aa25.87■■□□□ 1.73
VPS28-205ENST00000526204 GCP02774 474 aa25.87■■□□□ 1.73
VPS28-205ENST00000526204 C1orf141Q5JVX7 400 aa25.87■■□□□ 1.73
VPS28-205ENST00000526204 IL1RAPL2Q9NP60 686 aa25.87■■□□□ 1.73
VPS28-205ENST00000526204 GAS2L3Q86XJ1 694 aa25.87■■□□□ 1.73
VPS28-205ENST00000526204 DBF4Q9UBU7 674 aaPredicted RBP25.87■■□□□ 1.73
VPS28-205ENST00000526204 LRRC59Q96AG4 307 aaKnown RBP25.86■■□□□ 1.73
VPS28-205ENST00000526204 TMX3Q96JJ7 454 aa25.86■■□□□ 1.73
VPS28-205ENST00000526204 RNMTO43148 476 aaKnown RBP25.85■■□□□ 1.73
VPS28-205ENST00000526204 NBPF7P0C2Y1 421 aaPredicted RBP25.85■■□□□ 1.73
VPS28-205ENST00000526204 PKP1Q13835 747 aa25.84■■□□□ 1.73
VPS28-205ENST00000526204 MPRIPQ6WCQ1 1025 aa25.84■■□□□ 1.73
VPS28-205ENST00000526204 UNC5CLQ8IV45 518 aa25.84■■□□□ 1.73
VPS28-205ENST00000526204 HDAC5Q9UQL6 1122 aa25.84■■□□□ 1.73
VPS28-205ENST00000526204 KCNQ3O43525 872 aa25.84■■□□□ 1.73
VPS28-205ENST00000526204 LMBRD1Q9NUN5 540 aa25.84■■□□□ 1.73
VPS28-205ENST00000526204 CUL4AQ13619 759 aa25.83■■□□□ 1.73
VPS28-205ENST00000526204 NUTM1Q86Y26 1132 aa25.83■■□□□ 1.73
VPS28-205ENST00000526204 INTS4Q96HW7 963 aaKnown RBP25.83■■□□□ 1.73
VPS28-205ENST00000526204 SLIT3O75094 1523 aa25.83■■□□□ 1.73
VPS28-205ENST00000526204 RRAGDQ9NQL2 400 aaPredicted RBP25.82■■□□□ 1.72
VPS28-205ENST00000526204 PI4K2BQ8TCG2 481 aa25.82■■□□□ 1.72
VPS28-205ENST00000526204 PALD1Q9ULE6 856 aa25.82■■□□□ 1.72
VPS28-205ENST00000526204 ADCY9O60503 1353 aa25.82■■□□□ 1.72
VPS28-205ENST00000526204 MTX1Q13505 466 aa25.81■■□□□ 1.72
VPS28-205ENST00000526204 ZDHHC9Q9Y397 364 aa25.81■■□□□ 1.72
VPS28-205ENST00000526204 ALDH1L1O75891 902 aa25.81■■□□□ 1.72
VPS28-205ENST00000526204 ANKRD24Q8TF21 1146 aa25.81■■□□□ 1.72
VPS28-205ENST00000526204 NPHP4O75161 1426 aaPredicted RBP25.8■■□□□ 1.72
VPS28-205ENST00000526204 CNTROBQ8N137 903 aa25.79■■□□□ 1.72
VPS28-205ENST00000526204 ORAI2Q96SN7 254 aa25.79■■□□□ 1.72
VPS28-205ENST00000526204 HEG1Q9ULI3 1381 aa25.79■■□□□ 1.72
VPS28-205ENST00000526204 GIGYF1O75420 1035 aaPredicted RBP25.79■■□□□ 1.72
VPS28-205ENST00000526204 HSPA4P34932 840 aa25.79■■□□□ 1.72
VPS28-205ENST00000526204 ZNF445P59923 1031 aa25.79■■□□□ 1.72
VPS28-205ENST00000526204 USP42Q9H9J4 1324 aaKnown RBP25.78■■□□□ 1.72
VPS28-205ENST00000526204 SETD1BQ9UPS6 1966 aaKnown RBP25.78■■□□□ 1.72
VPS28-205ENST00000526204 TTC41PQ6P2S7 1318 aa25.78■■□□□ 1.72
VPS28-205ENST00000526204 KSR2Q6VAB6 950 aa25.77■■□□□ 1.72
VPS28-205ENST00000526204 HYPKQ9NX55 129 aa25.76■■□□□ 1.71
VPS28-205ENST00000526204 LMTK3Q96Q04 1460 aa25.76■■□□□ 1.71
VPS28-205ENST00000526204 RGPD2P0DJD1 1756 aa25.76■■□□□ 1.71
VPS28-205ENST00000526204 SGSM2O43147 1006 aa25.76■■□□□ 1.71
VPS28-205ENST00000526204 ANXA1P04083 346 aa25.76■■□□□ 1.71
VPS28-205ENST00000526204 PXDNQ92626 1479 aa25.76■■□□□ 1.71
VPS28-205ENST00000526204 C9orf78Q9NZ63 289 aaPredicted RBP25.75■■□□□ 1.71
VPS28-205ENST00000526204 MAP3K2Q9Y2U5 619 aa25.75■■□□□ 1.71
VPS28-205ENST00000526204 AK9Q5TCS8 1911 aa25.75■■□□□ 1.71
VPS28-205ENST00000526204 PRPF40AO75400 957 aaKnown RBP25.75■■□□□ 1.71
VPS28-205ENST00000526204 GLRX3O76003 335 aaKnown RBP25.75■■□□□ 1.71
VPS28-205ENST00000526204 OS9Q13438 667 aaPredicted RBP25.75■■□□□ 1.71
VPS28-205ENST00000526204 RAD50Q92878 1312 aa25.74■■□□□ 1.71
VPS28-205ENST00000526204 BRD1O95696 1058 aa25.74■■□□□ 1.71
VPS28-205ENST00000526204 NCLP19338 710 aaKnown RBP25.74■■□□□ 1.71
VPS28-205ENST00000526204 XPCQ01831 940 aaPredicted RBP25.74■■□□□ 1.71
VPS28-205ENST00000526204 LMOD2Q6P5Q4 547 aa25.74■■□□□ 1.71
VPS28-205ENST00000526204 ERC1Q8IUD2 1116 aa25.74■■□□□ 1.71
VPS28-205ENST00000526204 CLASRPQ8N2M8 674 aaKnown RBP25.74■■□□□ 1.71
VPS28-205ENST00000526204 CAVIN1Q6NZI2 390 aaKnown RBP25.73■■□□□ 1.71
VPS28-205ENST00000526204 TRIM44Q96DX7 344 aaPredicted RBP25.73■■□□□ 1.71
VPS28-205ENST00000526204 CLCN1P35523 988 aa25.73■■□□□ 1.71
VPS28-205ENST00000526204 NASPP49321 788 aaPredicted RBP25.73■■□□□ 1.71
VPS28-205ENST00000526204 ANP32BQ92688 251 aaKnown RBP25.73■■□□□ 1.71
VPS28-205ENST00000526204 CAMTA1Q9Y6Y1 1673 aa25.72■■□□□ 1.71
VPS28-205ENST00000526204 ZSCAN23Q3MJ62 389 aa25.72■■□□□ 1.71
VPS28-205ENST00000526204 KRT28Q7Z3Y7 464 aa25.72■■□□□ 1.71
VPS28-205ENST00000526204 IL25Q9H293 177 aa25.72■■□□□ 1.71
VPS28-205ENST00000526204 DDX58O95786 925 aaKnown RBP25.72■■□□□ 1.71
VPS28-205ENST00000526204 MAP4K4O95819 1239 aaPredicted RBP25.72■■□□□ 1.71
VPS28-205ENST00000526204 KIAA1211Q6ZU35 1233 aa25.72■■□□□ 1.71
VPS28-205ENST00000526204 CCDC173Q0VFZ6 552 aa25.71■■□□□ 1.71
VPS28-205ENST00000526204 LINS1Q8NG48 757 aa25.71■■□□□ 1.71
VPS28-205ENST00000526204 GPATCH3Q96I76 525 aa25.71■■□□□ 1.71
VPS28-205ENST00000526204 UPF3BQ9BZI7 483 aaKnown RBP25.71■■□□□ 1.71
VPS28-205ENST00000526204 MST1RQ04912 1400 aa25.7■■□□□ 1.7
VPS28-205ENST00000526204 RUFY2Q8WXA3 655 aa25.7■■□□□ 1.7
VPS28-205ENST00000526204 AXIN2Q9Y2T1 843 aa25.7■■□□□ 1.7
VPS28-205ENST00000526204 PROSER3Q2NL68 480 aa25.69■■□□□ 1.7
VPS28-205ENST00000526204 LSG1Q9H089 658 aaKnown RBP25.69■■□□□ 1.7
VPS28-205ENST00000526204 DDX21Q9NR30 783 aaKnown RBP eCLIP25.69■■□□□ 1.7
VPS28-205ENST00000526204 MBD3O95983 291 aa25.69■■□□□ 1.7
VPS28-205ENST00000526204 PLEKHG5O94827 1062 aa25.68■■□□□ 1.7
VPS28-205ENST00000526204 GPT2Q8TD30 523 aa25.68■■□□□ 1.7
VPS28-205ENST00000526204 PPP1R9BQ96SB3 815 aa25.68■■□□□ 1.7
VPS28-205ENST00000526204 ECHDC1Q9NTX5 307 aa25.68■■□□□ 1.7
VPS28-205ENST00000526204 UTYO14607 1347 aa25.68■■□□□ 1.7
VPS28-205ENST00000526204 ESPNB1AK53 854 aa25.67■■□□□ 1.7
VPS28-205ENST00000526204 ANO8Q9HCE9 1232 aaPredicted RBP25.67■■□□□ 1.7
VPS28-205ENST00000526204 TRPM3Q9HCF6 1732 aaPredicted RBP25.67■■□□□ 1.7
VPS28-205ENST00000526204 SNX14Q9Y5W7 946 aa25.67■■□□□ 1.7
VPS28-205ENST00000526204 ERBB3P21860 1342 aa25.66■■□□□ 1.7
VPS28-205ENST00000526204 IFIT2P09913 472 aaKnown RBP25.66■■□□□ 1.7
VPS28-205ENST00000526204 NOL8Q76FK4 1167 aaKnown RBP25.66■■□□□ 1.7
VPS28-205ENST00000526204 PROSER2Q86WR7 435 aaPredicted RBP25.66■■□□□ 1.7
VPS28-205ENST00000526204 DIAPH3Q9NSV4 1193 aa25.66■■□□□ 1.7
VPS28-205ENST00000526204 GRM8O00222 908 aa25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms