RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SIPA1L3O60292 1781 aaPredicted RBP13.51□□□□□ -0.25
VPS28-204ENST00000526054 U2SURPO15042 1029 aaKnown RBP13.51□□□□□ -0.25
VPS28-204ENST00000526054 ZPR1O75312 459 aa13.51□□□□□ -0.25
VPS28-204ENST00000526054 SLC39A6Q13433 755 aa13.51□□□□□ -0.25
VPS28-204ENST00000526054 ARHGAP27Q6ZUM4 889 aa13.51□□□□□ -0.25
VPS28-204ENST00000526054 DLEC1Q9Y238 1755 aa13.5□□□□□ -0.25
VPS28-204ENST00000526054 NRXN2Q9P2S2 1712 aa13.5□□□□□ -0.25
VPS28-204ENST00000526054 ANP32CO43423 234 aa13.5□□□□□ -0.25
VPS28-204ENST00000526054 CYP19A1P11511 503 aaPredicted RBP13.5□□□□□ -0.25
VPS28-204ENST00000526054 USPL1Q5W0Q7 1092 aa13.5□□□□□ -0.25
VPS28-204ENST00000526054 SCN7AQ01118 1682 aa13.5□□□□□ -0.25
VPS28-204ENST00000526054 POLRMTO00411 1230 aaKnown RBP13.49□□□□□ -0.25
VPS28-204ENST00000526054 KIF3CO14782 793 aa13.49□□□□□ -0.25
VPS28-204ENST00000526054 HSPA6P17066 643 aa13.49□□□□□ -0.25
VPS28-204ENST00000526054 PIM2Q9P1W9 311 aa13.49□□□□□ -0.25
VPS28-204ENST00000526054 ZBTB1Q9Y2K1 713 aa13.49□□□□□ -0.25
VPS28-204ENST00000526054 KCNA3P22001 575 aa13.48□□□□□ -0.25
VPS28-204ENST00000526054 DALRD3Q5D0E6 543 aaKnown RBP13.48□□□□□ -0.25
VPS28-204ENST00000526054 TTC5Q8N0Z6 440 aa13.48□□□□□ -0.25
VPS28-204ENST00000526054 VSIG10Q8N0Z9 540 aa13.48□□□□□ -0.25
VPS28-204ENST00000526054 CHRNA5P30532 468 aa13.47□□□□□ -0.25
VPS28-204ENST00000526054 GAS2L2Q8NHY3 880 aa13.47□□□□□ -0.25
VPS28-204ENST00000526054 NARFQ9UHQ1 456 aa13.47□□□□□ -0.25
VPS28-204ENST00000526054 U2AF1L5P0DN76 240 aaPredicted RBP13.46□□□□□ -0.25
VPS28-204ENST00000526054 TM4SF1P30408 202 aa13.46□□□□□ -0.25
VPS28-204ENST00000526054 U2AF1Q01081 240 aaKnown RBP eCLIP13.46□□□□□ -0.25
VPS28-204ENST00000526054 TEFQ10587 303 aa13.46□□□□□ -0.25
VPS28-204ENST00000526054 TNRC6CQ9HCJ0 1690 aaKnown RBP13.46□□□□□ -0.26
VPS28-204ENST00000526054 SBF1O95248 1867 aa13.46□□□□□ -0.26
VPS28-204ENST00000526054 GNAT3A8MTJ3 354 aa13.45□□□□□ -0.26
VPS28-204ENST00000526054 CANXP27824 592 aaKnown RBP13.45□□□□□ -0.26
VPS28-204ENST00000526054 NFIXQ14938 502 aa13.45□□□□□ -0.26
VPS28-204ENST00000526054 C9orf131Q5VYM1 1079 aa13.45□□□□□ -0.26
VPS28-204ENST00000526054 HEG1Q9ULI3 1381 aa13.45□□□□□ -0.26
VPS28-204ENST00000526054 STARD3NLO95772 234 aa13.44□□□□□ -0.26
VPS28-204ENST00000526054 NMRK2Q9NPI5 230 aa13.44□□□□□ -0.26
VPS28-204ENST00000526054 TIAM2Q8IVF5 1701 aa13.44□□□□□ -0.26
VPS28-204ENST00000526054 BCORQ6W2J9 1755 aa13.43□□□□□ -0.26
VPS28-204ENST00000526054 TOMM70O94826 608 aa13.43□□□□□ -0.26
VPS28-204ENST00000526054 ZNF790Q6PG37 636 aa13.43□□□□□ -0.26
VPS28-204ENST00000526054 ANKRD31Q8N7Z5 1873 aa13.43□□□□□ -0.26
VPS28-204ENST00000526054 ZNF496Q96IT1 587 aaPredicted RBP13.43□□□□□ -0.26
VPS28-204ENST00000526054 BCL2L12Q9HB09 334 aa13.43□□□□□ -0.26
VPS28-204ENST00000526054 RNF181Q9P0P0 153 aa13.43□□□□□ -0.26
VPS28-204ENST00000526054 CARMIL3Q8ND23 1372 aa13.43□□□□□ -0.26
VPS28-204ENST00000526054 COL11A2P13942 1736 aaPredicted RBP13.42□□□□□ -0.26
VPS28-204ENST00000526054 A0A087WZG4 1122 aa13.42□□□□□ -0.26
VPS28-204ENST00000526054 SERPINB2P05120 415 aa13.42□□□□□ -0.26
VPS28-204ENST00000526054 PRKAR2BP31323 418 aa13.42□□□□□ -0.26
VPS28-204ENST00000526054 IL17REQ8NFR9 667 aa13.42□□□□□ -0.26
VPS28-204ENST00000526054 RSPH6AQ9H0K4 717 aa13.42□□□□□ -0.26
VPS28-204ENST00000526054 ZNF330Q9Y3S2 320 aaPredicted RBP13.42□□□□□ -0.26
VPS28-204ENST00000526054 CEMIPQ8WUJ3 1361 aa13.42□□□□□ -0.26
VPS28-204ENST00000526054 WDR90Q96KV7 1748 aa13.42□□□□□ -0.26
VPS28-204ENST00000526054 KDM2BQ8NHM5 1336 aa13.41□□□□□ -0.26
VPS28-204ENST00000526054 NEFMP07197 916 aa13.41□□□□□ -0.26
VPS28-204ENST00000526054 EIF5P55010 431 aaKnown RBP13.41□□□□□ -0.26
VPS28-204ENST00000526054 WDR43Q15061 677 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS28-204ENST00000526054 BICDL1Q6ZP65 573 aa13.41□□□□□ -0.26
VPS28-204ENST00000526054 PNNQ9H307 717 aaKnown RBP13.41□□□□□ -0.26
VPS28-204ENST00000526054 APLP1P51693 650 aa13.4□□□□□ -0.26
VPS28-204ENST00000526054 RASSF7Q02833 373 aa13.4□□□□□ -0.26
VPS28-204ENST00000526054 C16orf71Q8IYS4 520 aaPredicted RBP13.4□□□□□ -0.26
VPS28-204ENST00000526054 FMNL2Q96PY5 1086 aa13.4□□□□□ -0.26
VPS28-204ENST00000526054 TEX13AQ9BXU3 409 aaPredicted RBP13.4□□□□□ -0.26
VPS28-204ENST00000526054 NPM2Q86SE8 214 aaKnown RBP13.39□□□□□ -0.27
VPS28-204ENST00000526054 C2CD5Q86YS7 1000 aa13.39□□□□□ -0.27
VPS28-204ENST00000526054 PHACTR3Q96KR7 559 aa13.39□□□□□ -0.27
VPS28-204ENST00000526054 CACNA1SQ13698 1873 aa13.39□□□□□ -0.27
VPS28-204ENST00000526054 CCDC88AQ3V6T2 1871 aa13.39□□□□□ -0.27
VPS28-204ENST00000526054 MAPK8IP3Q9UPT6 1336 aa13.39□□□□□ -0.27
VPS28-204ENST00000526054 ZC3H4Q9UPT8 1303 aaKnown RBP13.39□□□□□ -0.27
VPS28-204ENST00000526054 BTBD11A6QL63 1104 aa13.38□□□□□ -0.27
VPS28-204ENST00000526054 H0YIN7 160 aa13.38□□□□□ -0.27
VPS28-204ENST00000526054 IL6STP40189 918 aaPredicted RBP13.38□□□□□ -0.27
VPS28-204ENST00000526054 TBC1D9BQ66K14 1250 aa13.38□□□□□ -0.27
VPS28-204ENST00000526054 TTLL6Q8N841 843 aa13.38□□□□□ -0.27
VPS28-204ENST00000526054 RBM46Q8TBY0 533 aaKnown RBP13.38□□□□□ -0.27
VPS28-204ENST00000526054 LAMB4A4D0S4 1761 aa13.37□□□□□ -0.27
VPS28-204ENST00000526054 DLG5Q8TDM6 1919 aa13.37□□□□□ -0.27
VPS28-204ENST00000526054 MRS2Q9HD23 443 aa13.37□□□□□ -0.27
VPS28-204ENST00000526054 TBC1D2BQ9UPU7 963 aa13.37□□□□□ -0.27
VPS28-204ENST00000526054 ARFGEF2Q9Y6D5 1785 aa13.37□□□□□ -0.27
VPS28-204ENST00000526054 NPHP1O15259 732 aa13.36□□□□□ -0.27
VPS28-204ENST00000526054 A1BGP04217 495 aa13.36□□□□□ -0.27
VPS28-204ENST00000526054 LMNB1P20700 586 aa13.36□□□□□ -0.27
VPS28-204ENST00000526054 RTF1Q92541 710 aaKnown RBP13.36□□□□□ -0.27
VPS28-204ENST00000526054 FER1L6Q2WGJ9 1857 aa13.36□□□□□ -0.27
VPS28-204ENST00000526054 KCNQ3O43525 872 aa13.35□□□□□ -0.27
VPS28-204ENST00000526054 PDE6BP35913 854 aa13.35□□□□□ -0.27
VPS28-204ENST00000526054 DIEXFQ68CQ4 756 aaKnown RBP13.35□□□□□ -0.27
VPS28-204ENST00000526054 PRR5LQ6MZQ0 368 aa13.35□□□□□ -0.27
VPS28-204ENST00000526054 CNBD1Q8NA66 436 aa13.35□□□□□ -0.27
VPS28-204ENST00000526054 DICER1Q9UPY3 1922 aaKnown RBP13.35□□□□□ -0.27
VPS28-204ENST00000526054 CAMTA2O94983 1202 aa13.34□□□□□ -0.27
VPS28-204ENST00000526054 FSTL1Q12841 308 aa13.34□□□□□ -0.27
VPS28-204ENST00000526054 MCM10Q7L590 875 aa13.34□□□□□ -0.27
VPS28-204ENST00000526054 DZIP3Q86Y13 1208 aaKnown RBP13.34□□□□□ -0.27
VPS28-204ENST00000526054 CCDC24Q8N4L8 307 aa13.34□□□□□ -0.27
VPS28-204ENST00000526054 ZNF622Q969S3 477 aaKnown RBP eCLIP13.34□□□□□ -0.272e-11■■■■■ 40.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms