RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 PRR20CP86479 221 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 PRR20DP86480 221 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 PRR20BP86481 221 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 PRR20AP86496 221 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 NEUROD1Q13562 356 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 VPS72Q15906 364 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 NBPF8Q3BBV2 869 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 NBPF14Q5TI25 921 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 RSBN1LQ6PCB5 846 aaPredicted RBP7.16□□□□□ -1.26
CD44-218ENST00000525469 LIAT1Q6ZQX7 453 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 ZBTB3Q9H5J0 574 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 SPON1Q9HCB6 807 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 ANKRD30AQ9BXX3 1397 aa7.16□□□□□ -1.26
CD44-218ENST00000525469 SPTLC1O15269 473 aa7.15□□□□□ -1.26
CD44-218ENST00000525469 NDUFV2P19404 249 aa7.15□□□□□ -1.26
CD44-218ENST00000525469 EZH2Q15910 746 aaKnown RBP7.15□□□□□ -1.26
CD44-218ENST00000525469 ESCO1Q5FWF5 840 aa7.15□□□□□ -1.26
CD44-218ENST00000525469 PLA2G2CQ5R387 149 aa7.15□□□□□ -1.26
CD44-218ENST00000525469 PRPF38BQ5VTL8 546 aaKnown RBP7.15□□□□□ -1.26
CD44-218ENST00000525469 CCDC24Q8N4L8 307 aa7.15□□□□□ -1.26
CD44-218ENST00000525469 DDRGK1Q96HY6 314 aa7.15□□□□□ -1.26
CD44-218ENST00000525469 CHIC2Q9UKJ5 165 aa7.15□□□□□ -1.26
CD44-218ENST00000525469 LRPPRCP42704 1394 aaKnown RBP7.15□□□□□ -1.26
CD44-218ENST00000525469 NINLQ9Y2I6 1382 aa7.15□□□□□ -1.26
CD44-218ENST00000525469 SLIT2O94813 1529 aa7.15□□□□□ -1.27
CD44-218ENST00000525469 PTPN23Q9H3S7 1636 aa7.15□□□□□ -1.27
CD44-218ENST00000525469 XPCQ01831 940 aaPredicted RBP7.14□□□□□ -1.27
CD44-218ENST00000525469 ZNF326Q5BKZ1 582 aaKnown RBP7.14□□□□□ -1.27
CD44-218ENST00000525469 DESI1Q6ICB0 168 aa7.14□□□□□ -1.27
CD44-218ENST00000525469 RIC3Q7Z5B4 369 aa7.14□□□□□ -1.27
CD44-218ENST00000525469 NUDT12Q9BQG2 462 aa7.14□□□□□ -1.27
CD44-218ENST00000525469 NWD2Q9ULI1 1742 aa7.14□□□□□ -1.27
CD44-218ENST00000525469 PCDHGC3Q9UN70 934 aa7.14□□□□□ -1.27
CD44-218ENST00000525469 CAMTA1Q9Y6Y1 1673 aa7.14□□□□□ -1.27
CD44-218ENST00000525469 ADGRB2O60241 1585 aa7.13□□□□□ -1.27
CD44-218ENST00000525469 METP08581 1390 aa7.13□□□□□ -1.27
CD44-218ENST00000525469 FOXO3O43524 673 aa7.13□□□□□ -1.27
CD44-218ENST00000525469 KCNQ2O43526 872 aa7.13□□□□□ -1.27
CD44-218ENST00000525469 CCNYL3P0C7X3 344 aa7.13□□□□□ -1.27
CD44-218ENST00000525469 TRIM32Q13049 653 aa7.13□□□□□ -1.27
CD44-218ENST00000525469 PTPRNQ16849 979 aa7.13□□□□□ -1.27
CD44-218ENST00000525469 TUSC1Q2TAM9 212 aa7.13□□□□□ -1.27
CD44-218ENST00000525469 PRR7Q8TB68 274 aa7.13□□□□□ -1.27
CD44-218ENST00000525469 SYMPKQ92797 1274 aaKnown RBP7.13□□□□□ -1.27
CD44-218ENST00000525469 PLCH1Q4KWH8 1693 aa7.12□□□□□ -1.27
CD44-218ENST00000525469 ABCC5O15440 1437 aa7.12□□□□□ -1.27
CD44-218ENST00000525469 GIGYF1O75420 1035 aaPredicted RBP7.12□□□□□ -1.27
CD44-218ENST00000525469 APBA3O96018 575 aa7.12□□□□□ -1.27
CD44-218ENST00000525469 EMID1Q96A84 441 aaPredicted RBP7.12□□□□□ -1.27
CD44-218ENST00000525469 KDM4CQ9H3R0 1056 aa7.12□□□□□ -1.27
CD44-218ENST00000525469 TNS1Q9HBL0 1735 aaKnown RBP7.12□□□□□ -1.27
CD44-218ENST00000525469 USP32Q8NFA0 1604 aa7.12□□□□□ -1.27
CD44-218ENST00000525469 NRXN3Q9Y4C0 1643 aa7.12□□□□□ -1.27
CD44-218ENST00000525469 DISP2A7MBM2 1401 aa7.11□□□□□ -1.27
CD44-218ENST00000525469 DAPK1P53355 1430 aa7.11□□□□□ -1.27
CD44-218ENST00000525469 PARD3Q8TEW0 1356 aa7.11□□□□□ -1.27
CD44-218ENST00000525469 CLK2P49760 499 aaKnown RBP7.11□□□□□ -1.27
CD44-218ENST00000525469 PKDCCQ504Y2 493 aa7.11□□□□□ -1.27
CD44-218ENST00000525469 FAM182BQ5T319 152 aa7.11□□□□□ -1.27
CD44-218ENST00000525469 MYSM1Q5VVJ2 828 aa7.11□□□□□ -1.27
CD44-218ENST00000525469 ADGRL2O95490 1459 aa7.11□□□□□ -1.27
CD44-218ENST00000525469 IQGAP3Q86VI3 1631 aa7.1□□□□□ -1.27
CD44-218ENST00000525469 TRIM37O94972 964 aa7.1□□□□□ -1.27
CD44-218ENST00000525469 WNT7BP56706 349 aa7.1□□□□□ -1.27
CD44-218ENST00000525469 FOXC1Q12948 553 aa7.1□□□□□ -1.27
CD44-218ENST00000525469 ERICH6BQ5W0A0 696 aa7.1□□□□□ -1.27
CD44-218ENST00000525469 HELBQ8NG08 1087 aaPredicted RBP7.1□□□□□ -1.27
CD44-218ENST00000525469 CAMKK2Q96RR4 588 aa7.1□□□□□ -1.27
CD44-218ENST00000525469 PXDNQ92626 1479 aa7.1□□□□□ -1.27
CD44-218ENST00000525469 E9PCH4 1651 aa7.09□□□□□ -1.27
CD44-218ENST00000525469 TNFRSF10AO00220 468 aa7.09□□□□□ -1.27
CD44-218ENST00000525469 GDF9O60383 454 aa7.09□□□□□ -1.27
CD44-218ENST00000525469 DGAT1O75907 488 aa7.09□□□□□ -1.27
CD44-218ENST00000525469 CSPP1Q1MSJ5 1256 aa7.09□□□□□ -1.27
CD44-218ENST00000525469 FAM196AQ6ZSG2 479 aa7.09□□□□□ -1.27
CD44-218ENST00000525469 CYP4X1Q8N118 509 aa7.09□□□□□ -1.27
CD44-218ENST00000525469 SPATA31A3Q5VYP0 1347 aa7.08□□□□□ -1.28
CD44-218ENST00000525469 NUP188Q5SRE5 1749 aa7.08□□□□□ -1.28
CD44-218ENST00000525469 WNT7AO00755 349 aa7.08□□□□□ -1.28
CD44-218ENST00000525469 PSME1Q06323 249 aa7.08□□□□□ -1.28
CD44-218ENST00000525469 DIEXFQ68CQ4 756 aaKnown RBP7.08□□□□□ -1.28
CD44-218ENST00000525469 TRIM67Q6ZTA4 783 aa7.08□□□□□ -1.28
CD44-218ENST00000525469 RREB1Q92766 1687 aa7.07□□□□□ -1.28
CD44-218ENST00000525469 FAM187AA6NFU0 413 aa7.07□□□□□ -1.28
CD44-218ENST00000525469 SH3D19Q5HYK7 790 aa7.07□□□□□ -1.28
CD44-218ENST00000525469 TRAF7Q6Q0C0 670 aa7.07□□□□□ -1.28
CD44-218ENST00000525469 KRT28Q7Z3Y7 464 aa7.07□□□□□ -1.28
CD44-218ENST00000525469 CABLES1Q8TDN4 633 aa7.07□□□□□ -1.28
CD44-218ENST00000525469 TSC1Q92574 1164 aa7.07□□□□□ -1.28
CD44-218ENST00000525469 GPBP1L1Q9HC44 474 aaPredicted RBP7.07□□□□□ -1.28
CD44-218ENST00000525469 HFM1A2PYH4 1435 aa7.07□□□□□ -1.28
CD44-218ENST00000525469 CCDC144AA2RUR9 1427 aa7.07□□□□□ -1.28
CD44-218ENST00000525469 ANKRD50Q9ULJ7 1429 aa7.07□□□□□ -1.28
CD44-218ENST00000525469 KIF1BO60333 1816 aa7.06□□□□□ -1.28
CD44-218ENST00000525469 TTC24A2A3L6 582 aaPredicted RBP7.06□□□□□ -1.28
CD44-218ENST00000525469 FAM83GA6ND36 823 aa7.06□□□□□ -1.28
CD44-218ENST00000525469 KCNH2Q12809 1159 aa7.06□□□□□ -1.28
CD44-218ENST00000525469 SKIV2LQ15477 1246 aaKnown RBP7.06□□□□□ -1.28
CD44-218ENST00000525469 NEUROD2Q15784 382 aa7.06□□□□□ -1.28
CD44-218ENST00000525469 EVA1BQ9NVM1 165 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms