RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 NEUROD1Q13562 356 aa19.49■□□□□ 0.71
NKX3-1-202ENST00000523261 TTLL6Q8N841 843 aa19.49■□□□□ 0.71
NKX3-1-202ENST00000523261 AFDNP55196 1824 aaKnown RBP19.48■□□□□ 0.71
NKX3-1-202ENST00000523261 HSPA8P11142 646 aaKnown RBP19.48■□□□□ 0.71
NKX3-1-202ENST00000523261 NRXN2Q9P2S2 1712 aa19.48■□□□□ 0.71
NKX3-1-202ENST00000523261 DICER1Q9UPY3 1922 aaKnown RBP19.47■□□□□ 0.71
NKX3-1-202ENST00000523261 ANKRD26Q9UPS8 1709 aa19.47■□□□□ 0.71
NKX3-1-202ENST00000523261 WASHC2AQ641Q2 1341 aa19.45■□□□□ 0.7
NKX3-1-202ENST00000523261 TJP1Q07157 1748 aa19.45■□□□□ 0.7
NKX3-1-202ENST00000523261 PTCD1O75127 700 aaKnown RBP19.44■□□□□ 0.7
NKX3-1-202ENST00000523261 ERFEQ4G0M1 354 aa19.44■□□□□ 0.7
NKX3-1-202ENST00000523261 CCDC85CA6NKD9 419 aa19.43■□□□□ 0.7
NKX3-1-202ENST00000523261 TMEM88BA6NKF7 163 aa19.43■□□□□ 0.7
NKX3-1-202ENST00000523261 PPM1GO15355 546 aaPredicted RBP19.43■□□□□ 0.7
NKX3-1-202ENST00000523261 USPL1Q5W0Q7 1092 aa19.43■□□□□ 0.7
NKX3-1-202ENST00000523261 INTS5Q6P9B9 1019 aaKnown RBP19.43■□□□□ 0.7
NKX3-1-202ENST00000523261 ST20-MTHFSA0A0A6YYL1 179 aa19.42■□□□□ 0.7
NKX3-1-202ENST00000523261 DDNO94850 711 aaPredicted RBP19.42■□□□□ 0.7
NKX3-1-202ENST00000523261 NFIXQ14938 502 aa19.42■□□□□ 0.7
NKX3-1-202ENST00000523261 C2CD5Q86YS7 1000 aa19.42■□□□□ 0.7
NKX3-1-202ENST00000523261 FER1L6Q2WGJ9 1857 aa19.41■□□□□ 0.7
NKX3-1-202ENST00000523261 ZPR1O75312 459 aa19.41■□□□□ 0.7
NKX3-1-202ENST00000523261 ITGBL1O95965 494 aaPredicted RBP19.41■□□□□ 0.7
NKX3-1-202ENST00000523261 HSP90AB1P08238 724 aaKnown RBP19.41■□□□□ 0.7
NKX3-1-202ENST00000523261 CABP4P57796 275 aa19.41■□□□□ 0.7
NKX3-1-202ENST00000523261 LDHDQ86WU2 507 aa19.41■□□□□ 0.7
NKX3-1-202ENST00000523261 CARMIL3Q8ND23 1372 aa19.4■□□□□ 0.7
NKX3-1-202ENST00000523261 RASSF10A6NK89 507 aa19.39■□□□□ 0.69
NKX3-1-202ENST00000523261 H0YIN7 160 aa19.39■□□□□ 0.69
NKX3-1-202ENST00000523261 SERPINB2P05120 415 aa19.39■□□□□ 0.69
NKX3-1-202ENST00000523261 SLC24A1O60721 1099 aa19.38■□□□□ 0.69
NKX3-1-202ENST00000523261 SOS1Q07889 1333 aaPredicted RBP19.38■□□□□ 0.69
NKX3-1-202ENST00000523261 LTBP3Q9NS15 1303 aa19.37■□□□□ 0.69
NKX3-1-202ENST00000523261 MAP2K1Q02750 393 aaPredicted RBP19.37■□□□□ 0.69
NKX3-1-202ENST00000523261 TAF1DQ9H5J8 278 aaPredicted RBP19.37■□□□□ 0.69
NKX3-1-202ENST00000523261 SCN4AP35499 1836 aa19.37■□□□□ 0.69
NKX3-1-202ENST00000523261 IQCA1LA6NCM1 817 aa19.36■□□□□ 0.69
NKX3-1-202ENST00000523261 C21orf2O43822 256 aa19.36■□□□□ 0.69
NKX3-1-202ENST00000523261 DEFB115Q30KQ5 88 aa19.36■□□□□ 0.69
NKX3-1-202ENST00000523261 BCL2L12Q9HB09 334 aa19.36■□□□□ 0.69
NKX3-1-202ENST00000523261 NARFQ9UHQ1 456 aa19.36■□□□□ 0.69
NKX3-1-202ENST00000523261 PDE4DIPQ5VU43 2346 aa19.35■□□□□ 0.69
NKX3-1-202ENST00000523261 WDR33Q9C0J8 1336 aaKnown RBP19.35■□□□□ 0.69
NKX3-1-202ENST00000523261 L3MBTL3Q96JM7 780 aaPredicted RBP19.35■□□□□ 0.69
NKX3-1-202ENST00000523261 ZNF219Q9P2Y4 722 aaPredicted RBP19.35■□□□□ 0.69
NKX3-1-202ENST00000523261 TNRC18O15417 2968 aaPredicted RBP19.34■□□□□ 0.69
NKX3-1-202ENST00000523261 EIF4A2Q14240 407 aaKnown RBP19.34■□□□□ 0.69
NKX3-1-202ENST00000523261 ZNF530Q6P9A1 599 aaPredicted RBP19.34■□□□□ 0.69
NKX3-1-202ENST00000523261 NFATC2IPQ8NCF5 419 aa19.34■□□□□ 0.69
NKX3-1-202ENST00000523261 CARD14Q9BXL6 1004 aa19.34■□□□□ 0.69
NKX3-1-202ENST00000523261 ANKRD31Q8N7Z5 1873 aa19.34■□□□□ 0.69
NKX3-1-202ENST00000523261 DNAJC10Q8IXB1 793 aa19.33■□□□□ 0.68
NKX3-1-202ENST00000523261 TAOK3Q9H2K8 898 aa19.33■□□□□ 0.68
NKX3-1-202ENST00000523261 ADAMTSL1Q8N6G6 1762 aa19.33■□□□□ 0.68
NKX3-1-202ENST00000523261 THSD7BQ9C0I4 1608 aa19.33■□□□□ 0.68
NKX3-1-202ENST00000523261 COL15A1P39059 1388 aa19.32■□□□□ 0.68
NKX3-1-202ENST00000523261 COL11A2P13942 1736 aaPredicted RBP19.32■□□□□ 0.68
NKX3-1-202ENST00000523261 PLEKHO1Q53GL0 409 aaPredicted RBP19.32■□□□□ 0.68
NKX3-1-202ENST00000523261 ZNF622Q969S3 477 aaKnown RBP eCLIP19.32■□□□□ 0.68
NKX3-1-202ENST00000523261 POLKQ9UBT6 870 aa19.32■□□□□ 0.68
NKX3-1-202ENST00000523261 MTHFSP49914 203 aa19.31■□□□□ 0.68
NKX3-1-202ENST00000523261 EAPPQ56P03 285 aaPredicted RBP19.3■□□□□ 0.68
NKX3-1-202ENST00000523261 CYP19A1P11511 503 aaPredicted RBP19.29■□□□□ 0.68
NKX3-1-202ENST00000523261 PDZRN3Q9UPQ7 1066 aa19.29■□□□□ 0.68
NKX3-1-202ENST00000523261 AMOTQ4VCS5 1084 aa19.28■□□□□ 0.68
NKX3-1-202ENST00000523261 CLEC11AQ9Y240 323 aa19.28■□□□□ 0.68
NKX3-1-202ENST00000523261 PDE6BP35913 854 aa19.27■□□□□ 0.68
NKX3-1-202ENST00000523261 CNTROBQ8N137 903 aa19.27■□□□□ 0.68
NKX3-1-202ENST00000523261 BRIP1Q9BX63 1249 aa19.27■□□□□ 0.68
NKX3-1-202ENST00000523261 ABT1Q9ULW3 272 aaKnown RBP19.27■□□□□ 0.68
NKX3-1-202ENST00000523261 ZBTB1Q9Y2K1 713 aa19.27■□□□□ 0.68
NKX3-1-202ENST00000523261 SLX4Q8IY92 1834 aa19.27■□□□□ 0.68
NKX3-1-202ENST00000523261 MAP1SQ66K74 1059 aaPredicted RBP19.26■□□□□ 0.67
NKX3-1-202ENST00000523261 BICDL1Q6ZP65 573 aa19.26■□□□□ 0.67
NKX3-1-202ENST00000523261 CFAP44Q96MT7 982 aa19.26■□□□□ 0.67
NKX3-1-202ENST00000523261 HACL1Q9UJ83 578 aa19.26■□□□□ 0.67
NKX3-1-202ENST00000523261 SCN11AQ9UI33 1791 aa19.25■□□□□ 0.67
NKX3-1-202ENST00000523261 EPHX2P34913 555 aa19.25■□□□□ 0.67
NKX3-1-202ENST00000523261 C1orf141Q5JVX7 400 aa19.25■□□□□ 0.67
NKX3-1-202ENST00000523261 BEGAINQ9BUH8 593 aa19.25■□□□□ 0.67
NKX3-1-202ENST00000523261 MCOLN1Q9GZU1 580 aa19.25■□□□□ 0.67
NKX3-1-202ENST00000523261 PRR5LQ6MZQ0 368 aa19.24■□□□□ 0.67
NKX3-1-202ENST00000523261 CAPNS2Q96L46 248 aa19.24■□□□□ 0.67
NKX3-1-202ENST00000523261 CACNA1SQ13698 1873 aa19.24■□□□□ 0.67
NKX3-1-202ENST00000523261 ZNF541Q9H0D2 1346 aa19.24■□□□□ 0.67
NKX3-1-202ENST00000523261 LTBP1Q14766 1721 aa19.23■□□□□ 0.67
NKX3-1-202ENST00000523261 SOGA3Q5TF21 947 aa19.23■□□□□ 0.67
NKX3-1-202ENST00000523261 PRPF40BQ6NWY9 871 aaKnown RBP19.23■□□□□ 0.67
NKX3-1-202ENST00000523261 CCDC24Q8N4L8 307 aa19.23■□□□□ 0.67
NKX3-1-202ENST00000523261 CNKSR1Q969H4 720 aa19.23■□□□□ 0.67
NKX3-1-202ENST00000523261 TSKSQ9UJT2 592 aa19.23■□□□□ 0.67
NKX3-1-202ENST00000523261 ARFGEF2Q9Y6D5 1785 aa19.23■□□□□ 0.67
NKX3-1-202ENST00000523261 TBC1D9BQ66K14 1250 aa19.22■□□□□ 0.67
NKX3-1-202ENST00000523261 PNMA8AQ86V59 439 aaPredicted RBP19.22■□□□□ 0.67
NKX3-1-202ENST00000523261 GPR101Q96P66 508 aaPredicted RBP19.22■□□□□ 0.67
NKX3-1-202ENST00000523261 DDX21Q9NR30 783 aaKnown RBP eCLIP19.22■□□□□ 0.67
NKX3-1-202ENST00000523261 ECE1P42892 770 aa19.21■□□□□ 0.67
NKX3-1-202ENST00000523261 STYK1Q6J9G0 422 aa19.21■□□□□ 0.67
NKX3-1-202ENST00000523261 CYP4F22Q6NT55 531 aa19.2■□□□□ 0.66
NKX3-1-202ENST00000523261 AEBP1Q8IUX7 1158 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms