RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 CEP57L1Q8IYX8 460 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 TTC21BQ7Z4L5 1316 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 FAM83GA6ND36 823 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 XPCQ01831 940 aaPredicted RBP16.28■□□□□ 0.2
SYNPO-205ENST00000522122 FKBP4Q02790 459 aaKnown RBP eCLIP16.28■□□□□ 0.2
SYNPO-205ENST00000522122 PLEKHM2Q8IWE5 1019 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 CCDC83Q8IWF9 413 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 SMARCE1Q969G3 411 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 AK7Q96M32 723 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 ANTXR1Q9H6X2 564 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 POLKQ9UBT6 870 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 UHRF1BP1LA0JNW5 1464 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 MAP3K4Q9Y6R4 1608 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 TTLL5Q6EMB2 1281 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 C8orf58Q8NAV2 365 aa16.28■□□□□ 0.2
SYNPO-205ENST00000522122 OFD1O75665 1012 aa16.27■□□□□ 0.2
SYNPO-205ENST00000522122 MTMR7Q9Y216 660 aa16.27■□□□□ 0.2
SYNPO-205ENST00000522122 ZFYVE16Q7Z3T8 1539 aa16.27■□□□□ 0.2
SYNPO-205ENST00000522122 TXLNAP40222 546 aa16.27■□□□□ 0.2
SYNPO-205ENST00000522122 PPIP5K1Q6PFW1 1433 aa16.27■□□□□ 0.2
SYNPO-205ENST00000522122 TCEAL9Q9UHQ7 104 aa16.27■□□□□ 0.2
SYNPO-205ENST00000522122 PIP4K2AP48426 406 aaPredicted RBP16.27■□□□□ 0.2
SYNPO-205ENST00000522122 PRPF40BQ6NWY9 871 aaKnown RBP16.27■□□□□ 0.2
SYNPO-205ENST00000522122 NACAP1Q9BZK3 213 aa16.27■□□□□ 0.2
SYNPO-205ENST00000522122 FILIP1Q7Z7B0 1213 aa16.27■□□□□ 0.19
SYNPO-205ENST00000522122 BRPF1P55201 1214 aaPredicted RBP16.26■□□□□ 0.19
SYNPO-205ENST00000522122 YTHDC2Q9H6S0 1430 aaKnown RBP16.26■□□□□ 0.19
SYNPO-205ENST00000522122 UVSSAQ2YD98 709 aa16.26■□□□□ 0.19
SYNPO-205ENST00000522122 TSPYL6Q8N831 410 aa16.26■□□□□ 0.19
SYNPO-205ENST00000522122 ERCC4Q92889 916 aaPredicted RBP16.26■□□□□ 0.19
SYNPO-205ENST00000522122 TMX3Q96JJ7 454 aa16.26■□□□□ 0.19
SYNPO-205ENST00000522122 ZSCAN25Q6NSZ9 544 aa16.26■□□□□ 0.19
SYNPO-205ENST00000522122 USP26Q9BXU7 913 aa16.26■□□□□ 0.19
SYNPO-205ENST00000522122 SH2B1Q9NRF2 756 aaPredicted RBP16.26■□□□□ 0.19
SYNPO-205ENST00000522122 ANAPC15P60006 121 aa16.25■□□□□ 0.19
SYNPO-205ENST00000522122 DDX11Q96FC9 970 aa16.25■□□□□ 0.19
SYNPO-205ENST00000522122 KIF24Q5T7B8 1368 aa16.25■□□□□ 0.19
SYNPO-205ENST00000522122 SLC3A2P08195 630 aaKnown RBP16.25■□□□□ 0.19
SYNPO-205ENST00000522122 CAGE1Q8TC20 777 aa16.25■□□□□ 0.19
SYNPO-205ENST00000522122 LRRFIP2Q9Y608 721 aaKnown RBP16.25■□□□□ 0.19
SYNPO-205ENST00000522122 ZCCHC11Q5TAX3 1644 aaKnown RBP16.25■□□□□ 0.19
SYNPO-205ENST00000522122 USP19O94966 1318 aa16.25■□□□□ 0.19
SYNPO-205ENST00000522122 SCAND2PQ9GZW5 306 aaPredicted RBP16.25■□□□□ 0.19
SYNPO-205ENST00000522122 STRN4Q9NRL3 753 aa16.25■□□□□ 0.19
SYNPO-205ENST00000522122 FSD2A1L4K1 749 aa16.24■□□□□ 0.19
SYNPO-205ENST00000522122 CEP85Q6P2H3 762 aa16.24■□□□□ 0.19
SYNPO-205ENST00000522122 KCNH5Q8NCM2 988 aa16.24■□□□□ 0.19
SYNPO-205ENST00000522122 DACH1Q9UI36 760 aa16.24■□□□□ 0.19
SYNPO-205ENST00000522122 UGGT1Q9NYU2 1555 aa16.24■□□□□ 0.19
SYNPO-205ENST00000522122 CDKL5O76039 1030 aa16.24■□□□□ 0.19
SYNPO-205ENST00000522122 TOM1L2Q6ZVM7 507 aa16.24■□□□□ 0.19
SYNPO-205ENST00000522122 DDX54Q8TDD1 881 aaKnown RBP16.24■□□□□ 0.19
SYNPO-205ENST00000522122 LIMCH1Q9UPQ0 1083 aa16.24■□□□□ 0.19
SYNPO-205ENST00000522122 GNL3LQ9NVN8 582 aaKnown RBP16.24■□□□□ 0.19
SYNPO-205ENST00000522122 CCDC66A2RUB6 948 aa16.23■□□□□ 0.19
SYNPO-205ENST00000522122 PDE1AP54750 535 aa16.23■□□□□ 0.19
SYNPO-205ENST00000522122 FLIIQ13045 1269 aa16.23■□□□□ 0.19
SYNPO-205ENST00000522122 FBXO31Q5XUX0 539 aaPredicted RBP16.23■□□□□ 0.19
SYNPO-205ENST00000522122 ANKLE2Q86XL3 938 aa16.23■□□□□ 0.19
SYNPO-205ENST00000522122 BOLA2Q9H3K6 86 aa16.23■□□□□ 0.19
SYNPO-205ENST00000522122 CCDC69A6NI79 296 aa16.23■□□□□ 0.19
SYNPO-205ENST00000522122 LARP1Q6PKG0 1096 aaKnown RBP16.23■□□□□ 0.19
SYNPO-205ENST00000522122 MEIS3Q99687 375 aa16.23■□□□□ 0.19
SYNPO-205ENST00000522122 RIMS2Q9UQ26 1411 aa16.23■□□□□ 0.19
SYNPO-205ENST00000522122 ESYT1Q9BSJ8 1104 aa16.23■□□□□ 0.19
SYNPO-205ENST00000522122 CDR1P51861 262 aa16.23■□□□□ 0.19
SYNPO-205ENST00000522122 DNAAF4Q8WXU2 420 aa16.23■□□□□ 0.19
SYNPO-205ENST00000522122 MAGEC2Q9UBF1 373 aaPredicted RBP16.23■□□□□ 0.19
SYNPO-205ENST00000522122 DYNC1I1O14576 645 aa16.22■□□□□ 0.19
SYNPO-205ENST00000522122 CBFA2T2O43439 604 aa16.22■□□□□ 0.19
SYNPO-205ENST00000522122 PPFIBP1Q86W92 1011 aa16.22■□□□□ 0.19
SYNPO-205ENST00000522122 PLEKHF1Q96S99 279 aa16.22■□□□□ 0.19
SYNPO-205ENST00000522122 CTDP1Q9Y5B0 961 aaPredicted RBP16.22■□□□□ 0.19
SYNPO-205ENST00000522122 C16orf71Q8IYS4 520 aaPredicted RBP16.22■□□□□ 0.19
SYNPO-205ENST00000522122 NPATQ14207 1427 aa16.22■□□□□ 0.19
SYNPO-205ENST00000522122 EPS15P42566 896 aa16.22■□□□□ 0.19
SYNPO-205ENST00000522122 CAMK4Q16566 473 aa16.22■□□□□ 0.19
SYNPO-205ENST00000522122 PHACTR3Q96KR7 559 aa16.22■□□□□ 0.19
SYNPO-205ENST00000522122 FBLN1P23142 703 aa16.22■□□□□ 0.19
SYNPO-205ENST00000522122 CCDC43Q96MW1 224 aaKnown RBP16.21■□□□□ 0.19
SYNPO-205ENST00000522122 MPHOSPH8Q99549 860 aa16.21■□□□□ 0.19
SYNPO-205ENST00000522122 U3KPZ7 1027 aaPredicted RBP16.21■□□□□ 0.19
SYNPO-205ENST00000522122 NOM1Q5C9Z4 860 aaKnown RBP16.21■□□□□ 0.19
SYNPO-205ENST00000522122 ZKSCAN5Q9Y2L8 839 aa16.21■□□□□ 0.19
SYNPO-205ENST00000522122 MSH6P52701 1360 aa16.21■□□□□ 0.19
SYNPO-205ENST00000522122 CFAP74Q9C0B2 1584 aa16.21■□□□□ 0.19
SYNPO-205ENST00000522122 RNF17Q9BXT8 1623 aaKnown RBP16.21■□□□□ 0.19
SYNPO-205ENST00000522122 ZC3H6P61129 1189 aaKnown RBP16.2■□□□□ 0.18
SYNPO-205ENST00000522122 NUP133Q8WUM0 1156 aa16.2■□□□□ 0.18
SYNPO-205ENST00000522122 PRIM1P49642 420 aaKnown RBP16.2■□□□□ 0.18
SYNPO-205ENST00000522122 ABCC4O15439 1325 aa16.2■□□□□ 0.18
SYNPO-205ENST00000522122 ZNF445P59923 1031 aa16.2■□□□□ 0.18
SYNPO-205ENST00000522122 IMMTQ16891 758 aaKnown RBP16.2■□□□□ 0.18
SYNPO-205ENST00000522122 CWC15Q9P013 229 aaKnown RBP16.2■□□□□ 0.18
SYNPO-205ENST00000522122 SMTNL1A8MU46 457 aa16.19■□□□□ 0.18
SYNPO-205ENST00000522122 ZNHIT6Q9NWK9 470 aaKnown RBP16.19■□□□□ 0.18
SYNPO-205ENST00000522122 STK11IPQ8N1F8 1099 aa16.19■□□□□ 0.18
SYNPO-205ENST00000522122 PRDM11Q9NQV5 511 aa16.19■□□□□ 0.18
SYNPO-205ENST00000522122 PIK3R4Q99570 1358 aa16.19■□□□□ 0.18
SYNPO-205ENST00000522122 AMOTQ4VCS5 1084 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms