RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-208ENST00000520561 CACNA1FO60840 1977 aa11.42□□□□□ -0.58
CSMD1-208ENST00000520561 IRX6P78412 446 aaPredicted RBP11.42□□□□□ -0.58
CSMD1-208ENST00000520561 ATF7IPQ6VMQ6 1270 aa11.42□□□□□ -0.58
CSMD1-208ENST00000520561 API5Q9BZZ5 524 aaKnown RBP11.42□□□□□ -0.58
CSMD1-208ENST00000520561 NOB1Q9ULX3 412 aaKnown RBP11.42□□□□□ -0.58
CSMD1-208ENST00000520561 ZNF831Q5JPB2 1677 aa11.42□□□□□ -0.58
CSMD1-208ENST00000520561 STARD3NLO95772 234 aa11.41□□□□□ -0.58
CSMD1-208ENST00000520561 FKBP8Q14318 412 aa11.41□□□□□ -0.58
CSMD1-208ENST00000520561 PDE3AQ14432 1141 aa11.41□□□□□ -0.58
CSMD1-208ENST00000520561 ARHGAP45Q92619 1136 aa11.41□□□□□ -0.58
CSMD1-208ENST00000520561 BCL11BQ9C0K0 894 aaPredicted RBP11.41□□□□□ -0.58
CSMD1-208ENST00000520561 LOC102724428A0A0B4J2F2 783 aa11.4□□□□□ -0.58
CSMD1-208ENST00000520561 SIK1P57059 783 aa11.4□□□□□ -0.58
CSMD1-208ENST00000520561 FLIIQ13045 1269 aa11.4□□□□□ -0.58
CSMD1-208ENST00000520561 DNAJC10Q8IXB1 793 aa11.4□□□□□ -0.58
CSMD1-208ENST00000520561 DZIP1LQ8IYY4 767 aaKnown RBP11.4□□□□□ -0.58
CSMD1-208ENST00000520561 DDX21Q9NR30 783 aaKnown RBP eCLIP11.4□□□□□ -0.58
CSMD1-208ENST00000520561 HYPKQ9NX55 129 aa11.4□□□□□ -0.58
CSMD1-208ENST00000520561 USP16Q9Y5T5 823 aa11.4□□□□□ -0.58
CSMD1-208ENST00000520561 LY75O60449 1722 aa11.39□□□□□ -0.59
CSMD1-208ENST00000520561 TRIM27P14373 513 aa11.39□□□□□ -0.59
CSMD1-208ENST00000520561 ATP6V1AP38606 617 aa11.39□□□□□ -0.59
CSMD1-208ENST00000520561 FKBP5Q13451 457 aaPredicted RBP11.39□□□□□ -0.59
CSMD1-208ENST00000520561 GTF3C3Q9Y5Q9 886 aa11.39□□□□□ -0.59
CSMD1-208ENST00000520561 PXDNLA1KZ92 1463 aa11.38□□□□□ -0.59
CSMD1-208ENST00000520561 COL5A3P25940 1745 aaPredicted RBP11.38□□□□□ -0.59
CSMD1-208ENST00000520561 TRIM37O94972 964 aa11.38□□□□□ -0.59
CSMD1-208ENST00000520561 MYL6BP14649 208 aa11.38□□□□□ -0.59
CSMD1-208ENST00000520561 ERICH6BQ5W0A0 696 aa11.38□□□□□ -0.59
CSMD1-208ENST00000520561 G2E3Q7L622 706 aa11.38□□□□□ -0.59
CSMD1-208ENST00000520561 CLUAP1Q96AJ1 413 aa11.38□□□□□ -0.59
CSMD1-208ENST00000520561 TNS1Q9HBL0 1735 aaKnown RBP11.38□□□□□ -0.59
CSMD1-208ENST00000520561 ABCC4O15439 1325 aa11.37□□□□□ -0.59
CSMD1-208ENST00000520561 RREB1Q92766 1687 aa11.37□□□□□ -0.59
CSMD1-208ENST00000520561 DDX58O95786 925 aaKnown RBP11.37□□□□□ -0.59
CSMD1-208ENST00000520561 ANXA1P04083 346 aa11.37□□□□□ -0.59
CSMD1-208ENST00000520561 PROSER3Q2NL68 480 aa11.37□□□□□ -0.59
CSMD1-208ENST00000520561 C20orf194Q5TEA3 1177 aa11.37□□□□□ -0.59
CSMD1-208ENST00000520561 PTF1AQ7RTS3 328 aa11.37□□□□□ -0.59
CSMD1-208ENST00000520561 ITPRIPQ8IWB1 547 aa11.37□□□□□ -0.59
CSMD1-208ENST00000520561 PANK1Q8TE04 598 aa11.37□□□□□ -0.59
CSMD1-208ENST00000520561 SLC4A9Q96Q91 983 aa11.37□□□□□ -0.59
CSMD1-208ENST00000520561 CRBNQ96SW2 442 aa11.37□□□□□ -0.59
CSMD1-208ENST00000520561 PHAXQ9H814 394 aaKnown RBP11.37□□□□□ -0.59
CSMD1-208ENST00000520561 CCNL1Q9UK58 526 aaPredicted RBP11.37□□□□□ -0.59
CSMD1-208ENST00000520561 N4BP2Q86UW6 1770 aaPredicted RBP11.36□□□□□ -0.59
CSMD1-208ENST00000520561 A1BGP04217 495 aa11.36□□□□□ -0.59
CSMD1-208ENST00000520561 CYP19A1P11511 503 aaPredicted RBP11.36□□□□□ -0.59
CSMD1-208ENST00000520561 MVPQ14764 893 aaKnown RBP11.36□□□□□ -0.59
CSMD1-208ENST00000520561 PDIA6Q15084 440 aa11.36□□□□□ -0.59
CSMD1-208ENST00000520561 NPM2Q86SE8 214 aaKnown RBP11.36□□□□□ -0.59
CSMD1-208ENST00000520561 TNNQ9UQP3 1299 aa11.36□□□□□ -0.59
CSMD1-208ENST00000520561 RGPD3A6NKT7 1758 aaPredicted RBP11.36□□□□□ -0.59
CSMD1-208ENST00000520561 RGPD4Q7Z3J3 1758 aa11.36□□□□□ -0.59
CSMD1-208ENST00000520561 RLBP1P12271 317 aa11.35□□□□□ -0.59
CSMD1-208ENST00000520561 HMGB2P26583 209 aaKnown RBP11.35□□□□□ -0.59
CSMD1-208ENST00000520561 PIP4K2AP48426 406 aaPredicted RBP11.35□□□□□ -0.59
CSMD1-208ENST00000520561 AIMP1Q12904 312 aaKnown RBP11.35□□□□□ -0.59
CSMD1-208ENST00000520561 ITPK1Q13572 414 aa11.35□□□□□ -0.59
CSMD1-208ENST00000520561 XAGE3Q8WTP9 111 aa11.35□□□□□ -0.59
CSMD1-208ENST00000520561 CCDC87Q9NVE4 849 aa11.35□□□□□ -0.59
CSMD1-208ENST00000520561 DDX19BQ9UMR2 479 aa11.35□□□□□ -0.59
CSMD1-208ENST00000520561 COG6Q9Y2V7 657 aa11.35□□□□□ -0.59
CSMD1-208ENST00000520561 CNTNAP4Q9C0A0 1308 aa11.35□□□□□ -0.59
CSMD1-208ENST00000520561 NBPF26B4DH59 902 aa11.34□□□□□ -0.59
CSMD1-208ENST00000520561 CRKLP46109 303 aaKnown RBP11.34□□□□□ -0.59
CSMD1-208ENST00000520561 CCT4P50991 539 aaKnown RBP11.34□□□□□ -0.59
CSMD1-208ENST00000520561 SLC27A3Q5K4L6 730 aa11.34□□□□□ -0.59
CSMD1-208ENST00000520561 NBPF14Q5TI25 921 aa11.34□□□□□ -0.59
CSMD1-208ENST00000520561 NBPF10Q6P3W6 841 aaKnown RBP11.34□□□□□ -0.59
CSMD1-208ENST00000520561 SLC4A10Q6U841 1118 aa11.34□□□□□ -0.59
CSMD1-208ENST00000520561 TMEM57Q8N5G2 664 aa11.34□□□□□ -0.59
CSMD1-208ENST00000520561 NBPF15Q8N660 670 aa11.34□□□□□ -0.59
CSMD1-208ENST00000520561 EXOC6Q8TAG9 804 aa11.34□□□□□ -0.59
CSMD1-208ENST00000520561 DNAAF4Q8WXU2 420 aa11.34□□□□□ -0.59
CSMD1-208ENST00000520561 CHMP4BQ9H444 224 aaKnown RBP11.34□□□□□ -0.59
CSMD1-208ENST00000520561 ZBTB1Q9Y2K1 713 aa11.34□□□□□ -0.59
CSMD1-208ENST00000520561 ZNF330Q9Y3S2 320 aaPredicted RBP11.34□□□□□ -0.59
CSMD1-208ENST00000520561 ARFGEF2Q9Y6D5 1785 aa11.33□□□□□ -0.59
CSMD1-208ENST00000520561 ADCY9O60503 1353 aa11.33□□□□□ -0.6
CSMD1-208ENST00000520561 F6X3S4 739 aa11.33□□□□□ -0.6
CSMD1-208ENST00000520561 APBA3O96018 575 aa11.33□□□□□ -0.6
CSMD1-208ENST00000520561 IL6STP40189 918 aaPredicted RBP11.33□□□□□ -0.6
CSMD1-208ENST00000520561 KSR2Q6VAB6 950 aa11.33□□□□□ -0.6
CSMD1-208ENST00000520561 KIF6Q6ZMV9 814 aa11.33□□□□□ -0.6
CSMD1-208ENST00000520561 COPS6Q7L5N1 327 aa11.33□□□□□ -0.6
CSMD1-208ENST00000520561 LRP10Q7Z4F1 713 aa11.33□□□□□ -0.6
CSMD1-208ENST00000520561 RIC3Q7Z5B4 369 aa11.33□□□□□ -0.6
CSMD1-208ENST00000520561 LINC00116Q8NCU8 138 aa11.33□□□□□ -0.6
CSMD1-208ENST00000520561 ATP10DQ9P241 1426 aa11.33□□□□□ -0.6
CSMD1-208ENST00000520561 TAF1LQ8IZX4 1826 aa11.32□□□□□ -0.6
CSMD1-208ENST00000520561 C4BP0C0L5 1744 aa11.32□□□□□ -0.6
CSMD1-208ENST00000520561 NUP188Q5SRE5 1749 aa11.32□□□□□ -0.6
CSMD1-208ENST00000520561 PI4KAP2A4QPH2 592 aa11.32□□□□□ -0.6
CSMD1-208ENST00000520561 NEXNQ0ZGT2 675 aa11.32□□□□□ -0.6
CSMD1-208ENST00000520561 SF3B2Q13435 895 aaKnown RBP11.32□□□□□ -0.6
CSMD1-208ENST00000520561 AAMPQ13685 434 aa11.32□□□□□ -0.6
CSMD1-208ENST00000520561 INTS3Q68E01 1043 aaKnown RBP11.32□□□□□ -0.6
CSMD1-208ENST00000520561 PI4KAP1Q8N8J0 262 aa11.32□□□□□ -0.6
CSMD1-208ENST00000520561 PLBD2Q8NHP8 589 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms