RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 ZEB1P37275 1124 aaPredicted RBP39.43■■■■□ 3.9
SYNPO-203ENST00000518872 SRP68Q9UHB9 627 aaKnown RBP39.43■■■■□ 3.9
SYNPO-203ENST00000518872 KIAA1551Q9HCM1 1747 aa39.43■■■■□ 3.9
SYNPO-203ENST00000518872 MYBBP1AQ9BQG0 1328 aaKnown RBP39.42■■■■□ 3.9
SYNPO-203ENST00000518872 YBX3P16989 372 aaKnown RBP eCLIP39.42■■■■□ 3.9
SYNPO-203ENST00000518872 MCM10Q7L590 875 aa39.42■■■■□ 3.9
SYNPO-203ENST00000518872 PELP1Q8IZL8 1130 aaKnown RBP39.41■■■■□ 3.9
SYNPO-203ENST00000518872 FKBP8Q14318 412 aa39.39■■■■□ 3.9
SYNPO-203ENST00000518872 NARFQ9UHQ1 456 aa39.39■■■■□ 3.9
SYNPO-203ENST00000518872 PARP3Q9Y6F1 533 aa39.39■■■■□ 3.9
SYNPO-203ENST00000518872 ZPR1O75312 459 aa39.38■■■■□ 3.89
SYNPO-203ENST00000518872 KCNQ3O43525 872 aa39.36■■■■□ 3.89
SYNPO-203ENST00000518872 EIF5P55010 431 aaKnown RBP39.36■■■■□ 3.89
SYNPO-203ENST00000518872 DCTN1Q14203 1278 aa39.36■■■■□ 3.89
SYNPO-203ENST00000518872 PXDNLA1KZ92 1463 aa39.36■■■■□ 3.89
SYNPO-203ENST00000518872 TGFB2P61812 414 aa39.35■■■■□ 3.89
SYNPO-203ENST00000518872 NFE2L2Q16236 605 aa39.35■■■■□ 3.89
SYNPO-203ENST00000518872 USPL1Q5W0Q7 1092 aa39.34■■■■□ 3.89
SYNPO-203ENST00000518872 CANXP27824 592 aaKnown RBP39.33■■■■□ 3.89
SYNPO-203ENST00000518872 TM4SF1P30408 202 aa39.33■■■■□ 3.89
SYNPO-203ENST00000518872 TAF7Q15545 349 aaPredicted RBP39.32■■■■□ 3.89
SYNPO-203ENST00000518872 MAPK8IP3Q9UPT6 1336 aa39.32■■■■□ 3.88
SYNPO-203ENST00000518872 N4BP2Q86UW6 1770 aaPredicted RBP39.31■■■■□ 3.88
SYNPO-203ENST00000518872 DDR1Q08345 913 aa39.31■■■■□ 3.88
SYNPO-203ENST00000518872 A0A087WZG4 1122 aa39.3■■■■□ 3.88
SYNPO-203ENST00000518872 IL6STP40189 918 aaPredicted RBP39.3■■■■□ 3.88
SYNPO-203ENST00000518872 KDM3BQ7LBC6 1761 aa39.3■■■■□ 3.88
SYNPO-203ENST00000518872 BRCA1P38398 1863 aaKnown RBP39.3■■■■□ 3.88
SYNPO-203ENST00000518872 NRXN2Q9P2S2 1712 aa39.28■■■■□ 3.88
SYNPO-203ENST00000518872 POLRMTO00411 1230 aaKnown RBP39.28■■■■□ 3.88
SYNPO-203ENST00000518872 BCL2L12Q9HB09 334 aa39.28■■■■□ 3.88
SYNPO-203ENST00000518872 SCN7AQ01118 1682 aa39.28■■■■□ 3.88
SYNPO-203ENST00000518872 SNRPA1P09661 255 aaKnown RBP39.27■■■■□ 3.88
SYNPO-203ENST00000518872 AFDNP55196 1824 aaKnown RBP39.27■■■■□ 3.88
SYNPO-203ENST00000518872 PRKRIP1Q9H875 184 aaPredicted RBP39.27■■■■□ 3.88
SYNPO-203ENST00000518872 PNISRQ8TF01 805 aaKnown RBP39.26■■■■□ 3.88
SYNPO-203ENST00000518872 ZNF784Q8NCA9 323 aaPredicted RBP39.24■■■■□ 3.87
SYNPO-203ENST00000518872 USP16Q9Y5T5 823 aa39.24■■■■□ 3.87
SYNPO-203ENST00000518872 NFIXQ14938 502 aa39.23■■■■□ 3.87
SYNPO-203ENST00000518872 LAMB4A4D0S4 1761 aa39.23■■■■□ 3.87
SYNPO-203ENST00000518872 A1BGP04217 495 aa39.22■■■■□ 3.87
SYNPO-203ENST00000518872 BCORQ6W2J9 1755 aa39.19■■■■□ 3.86
SYNPO-203ENST00000518872 A0A0G2JLW4 131 aa39.18■■■■□ 3.86
SYNPO-203ENST00000518872 PRAMEF22A3QJZ6 481 aa39.18■■■■□ 3.86
SYNPO-203ENST00000518872 DPEP1P16444 411 aa39.18■■■■□ 3.86
SYNPO-203ENST00000518872 ARFGEF1Q9Y6D6 1849 aa39.16■■■■□ 3.86
SYNPO-203ENST00000518872 KCNA3P22001 575 aa39.15■■■■□ 3.86
SYNPO-203ENST00000518872 NPM2Q86SE8 214 aaKnown RBP39.15■■■■□ 3.86
SYNPO-203ENST00000518872 MIS18AQ9NYP9 233 aa39.15■■■■□ 3.86
SYNPO-203ENST00000518872 TMPOP42166 694 aaKnown RBP39.14■■■■□ 3.86
SYNPO-203ENST00000518872 THUMPD2Q9BTF0 503 aaKnown RBP39.14■■■■□ 3.86
SYNPO-203ENST00000518872 RIPK4P57078 832 aa39.13■■■■□ 3.85
SYNPO-203ENST00000518872 WWC3Q9ULE0 1092 aa39.13■■■■□ 3.85
SYNPO-203ENST00000518872 TBC1D2BQ9UPU7 963 aa39.13■■■■□ 3.85
SYNPO-203ENST00000518872 SERPINB2P05120 415 aa39.12■■■■□ 3.85
SYNPO-203ENST00000518872 LMOD3Q0VAK6 560 aa39.12■■■■□ 3.85
SYNPO-203ENST00000518872 ZNF330Q9Y3S2 320 aaPredicted RBP39.12■■■■□ 3.85
SYNPO-203ENST00000518872 CAMTA2O94983 1202 aa39.11■■■■□ 3.85
SYNPO-203ENST00000518872 WDR43Q15061 677 aaKnown RBP eCLIP39.11■■■■□ 3.85
SYNPO-203ENST00000518872 EIF4A1P60842 406 aaKnown RBP39.1■■■■□ 3.85
SYNPO-203ENST00000518872 RUNDC1Q96C34 613 aa39.09■■■■□ 3.85
SYNPO-203ENST00000518872 BABAM1Q9NWV8 329 aa39.09■■■■□ 3.85
SYNPO-203ENST00000518872 DLEC1Q9Y238 1755 aa39.08■■■■□ 3.85
SYNPO-203ENST00000518872 RGL2O15211 777 aa39.08■■■■□ 3.85
SYNPO-203ENST00000518872 GIGYF1O75420 1035 aaPredicted RBP39.08■■■■□ 3.85
SYNPO-203ENST00000518872 TBC1D9BQ66K14 1250 aa39.08■■■■□ 3.85
SYNPO-203ENST00000518872 DZIP3Q86Y13 1208 aaKnown RBP39.08■■■■□ 3.85
SYNPO-203ENST00000518872 PIM2Q9P1W9 311 aa39.08■■■■□ 3.85
SYNPO-203ENST00000518872 BCS1LQ9Y276 419 aa39.08■■■■□ 3.85
SYNPO-203ENST00000518872 NBPF26B4DH59 902 aa39.07■■■■□ 3.85
SYNPO-203ENST00000518872 NBPF10Q6P3W6 841 aaKnown RBP39.07■■■■□ 3.85
SYNPO-203ENST00000518872 NBPF15Q8N660 670 aa39.07■■■■□ 3.85
SYNPO-203ENST00000518872 ADCY9O60503 1353 aa39.07■■■■□ 3.84
SYNPO-203ENST00000518872 ADAMTS8Q9UP79 889 aa39.06■■■■□ 3.84
SYNPO-203ENST00000518872 CARMIL3Q8ND23 1372 aa39.06■■■■□ 3.84
SYNPO-203ENST00000518872 CLEC4GQ6UXB4 293 aa39.05■■■■□ 3.84
SYNPO-203ENST00000518872 PIP4K2AP48426 406 aaPredicted RBP39.04■■■■□ 3.84
SYNPO-203ENST00000518872 CCDC146Q8IYE0 955 aa39.03■■■■□ 3.84
SYNPO-203ENST00000518872 BICDL1Q6ZP65 573 aa39.02■■■■□ 3.84
SYNPO-203ENST00000518872 ANKRD31Q8N7Z5 1873 aa39.02■■■■□ 3.84
SYNPO-203ENST00000518872 CHRNA5P30532 468 aa39.01■■■■□ 3.84
SYNPO-203ENST00000518872 DALRD3Q5D0E6 543 aaKnown RBP39■■■■□ 3.83
SYNPO-203ENST00000518872 TSPYL4Q9UJ04 414 aa39■■■■□ 3.83
SYNPO-203ENST00000518872 SETDB2Q96T68 719 aa38.98■■■■□ 3.83
SYNPO-203ENST00000518872 ZNF652Q9Y2D9 606 aa38.98■■■■□ 3.83
SYNPO-203ENST00000518872 PDZRN3Q9UPQ7 1066 aa38.97■■■■□ 3.83
SYNPO-203ENST00000518872 RRP7AQ9Y3A4 280 aaKnown RBP38.97■■■■□ 3.83
SYNPO-203ENST00000518872 ATP10DQ9P241 1426 aa38.97■■■■□ 3.83
SYNPO-203ENST00000518872 ERBB4Q15303 1308 aa38.96■■■■□ 3.83
SYNPO-203ENST00000518872 TRIM35Q9UPQ4 493 aa38.96■■■■□ 3.83
SYNPO-203ENST00000518872 ZNF316A6NFI3 1004 aaPredicted RBP38.95■■■■□ 3.83
SYNPO-203ENST00000518872 PRR5LQ6MZQ0 368 aa38.95■■■■□ 3.83
SYNPO-203ENST00000518872 BRIP1Q9BX63 1249 aa38.93■■■■□ 3.82
SYNPO-203ENST00000518872 NEUROD2Q15784 382 aa38.92■■■■□ 3.82
SYNPO-203ENST00000518872 ARHGAP27Q6ZUM4 889 aa38.91■■■■□ 3.82
SYNPO-203ENST00000518872 CNBD1Q8NA66 436 aa38.9■■■■□ 3.82
SYNPO-203ENST00000518872 NUP98P52948 1817 aa38.9■■■■□ 3.82
SYNPO-203ENST00000518872 H0YIN7 160 aa38.89■■■■□ 3.82
SYNPO-203ENST00000518872 CHL1O00533 1208 aa38.89■■■■□ 3.82
SYNPO-203ENST00000518872 PDE6BP35913 854 aa38.89■■■■□ 3.82
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms