RNA–Protein interactions for RNA: ENST00000515546.1

HMGCLL1-209, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 4

Gene HMGCLL1, Length 569 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-209ENST00000515546 KCNQ3O43525 872 aa19.66■□□□□ 0.74
HMGCLL1-209ENST00000515546 SRP68Q9UHB9 627 aaKnown RBP19.66■□□□□ 0.74
HMGCLL1-209ENST00000515546 MAPK8IP3Q9UPT6 1336 aa19.66■□□□□ 0.74
HMGCLL1-209ENST00000515546 STARD3NLO95772 234 aa19.65■□□□□ 0.74
HMGCLL1-209ENST00000515546 TEX13AQ9BXU3 409 aaPredicted RBP19.65■□□□□ 0.74
HMGCLL1-209ENST00000515546 KIAA1551Q9HCM1 1747 aa19.65■□□□□ 0.74
HMGCLL1-209ENST00000515546 KDM3BQ7LBC6 1761 aa19.65■□□□□ 0.74
HMGCLL1-209ENST00000515546 SCN7AQ01118 1682 aa19.63■□□□□ 0.73
HMGCLL1-209ENST00000515546 EIF5P55010 431 aaKnown RBP19.62■□□□□ 0.73
HMGCLL1-209ENST00000515546 FKBP8Q14318 412 aa19.62■□□□□ 0.73
HMGCLL1-209ENST00000515546 TAF7Q15545 349 aaPredicted RBP19.62■□□□□ 0.73
HMGCLL1-209ENST00000515546 NARFQ9UHQ1 456 aa19.62■□□□□ 0.73
HMGCLL1-209ENST00000515546 PXDNLA1KZ92 1463 aa19.61■□□□□ 0.73
HMGCLL1-209ENST00000515546 GPR162Q16538 588 aa19.61■□□□□ 0.73
HMGCLL1-209ENST00000515546 LAMB4A4D0S4 1761 aa19.6■□□□□ 0.73
HMGCLL1-209ENST00000515546 YBX3P16989 372 aaKnown RBP eCLIP19.6■□□□□ 0.73
HMGCLL1-209ENST00000515546 CANXP27824 592 aaKnown RBP19.6■□□□□ 0.73
HMGCLL1-209ENST00000515546 DDR1Q08345 913 aa19.6■□□□□ 0.73
HMGCLL1-209ENST00000515546 USPL1Q5W0Q7 1092 aa19.6■□□□□ 0.73
HMGCLL1-209ENST00000515546 ZPR1O75312 459 aa19.59■□□□□ 0.73
HMGCLL1-209ENST00000515546 YY1P25490 414 aa19.59■□□□□ 0.73
HMGCLL1-209ENST00000515546 IL6STP40189 918 aaPredicted RBP19.59■□□□□ 0.73
HMGCLL1-209ENST00000515546 THUMPD2Q9BTF0 503 aaKnown RBP19.59■□□□□ 0.73
HMGCLL1-209ENST00000515546 BCL2L12Q9HB09 334 aa19.59■□□□□ 0.73
HMGCLL1-209ENST00000515546 A0A087WZG4 1122 aa19.58■□□□□ 0.72
HMGCLL1-209ENST00000515546 ZNF316A6NFI3 1004 aaPredicted RBP19.58■□□□□ 0.72
HMGCLL1-209ENST00000515546 SNRPA1P09661 255 aaKnown RBP19.58■□□□□ 0.72
HMGCLL1-209ENST00000515546 TM4SF1P30408 202 aa19.58■□□□□ 0.72
HMGCLL1-209ENST00000515546 WDR43Q15061 677 aaKnown RBP eCLIP19.58■□□□□ 0.72
HMGCLL1-209ENST00000515546 PNISRQ8TF01 805 aaKnown RBP19.58■□□□□ 0.72
HMGCLL1-209ENST00000515546 PARP3Q9Y6F1 533 aa19.58■□□□□ 0.72
HMGCLL1-209ENST00000515546 NRXN2Q9P2S2 1712 aa19.58■□□□□ 0.72
HMGCLL1-209ENST00000515546 PRAMEF22A3QJZ6 481 aa19.57■□□□□ 0.72
HMGCLL1-209ENST00000515546 POLRMTO00411 1230 aaKnown RBP19.57■□□□□ 0.72
HMGCLL1-209ENST00000515546 TMPOP42166 694 aaKnown RBP19.57■□□□□ 0.72
HMGCLL1-209ENST00000515546 USP16Q9Y5T5 823 aa19.57■□□□□ 0.72
HMGCLL1-209ENST00000515546 BCORQ6W2J9 1755 aa19.57■□□□□ 0.72
HMGCLL1-209ENST00000515546 A1BGP04217 495 aa19.56■□□□□ 0.72
HMGCLL1-209ENST00000515546 PELP1Q8IZL8 1130 aaKnown RBP19.56■□□□□ 0.72
HMGCLL1-209ENST00000515546 CHD4Q14839 1912 aa19.56■□□□□ 0.72
HMGCLL1-209ENST00000515546 RIPK4P57078 832 aa19.55■□□□□ 0.72
HMGCLL1-209ENST00000515546 TGFB2P61812 414 aa19.55■□□□□ 0.72
HMGCLL1-209ENST00000515546 LMOD3Q0VAK6 560 aa19.55■□□□□ 0.72
HMGCLL1-209ENST00000515546 RUNDC1Q96C34 613 aa19.55■□□□□ 0.72
HMGCLL1-209ENST00000515546 MIS18AQ9NYP9 233 aa19.55■□□□□ 0.72
HMGCLL1-209ENST00000515546 ADAMTS8Q9UP79 889 aa19.55■□□□□ 0.72
HMGCLL1-209ENST00000515546 GRIN3BO60391 1043 aa19.54■□□□□ 0.72
HMGCLL1-209ENST00000515546 NFIXQ14938 502 aa19.54■□□□□ 0.72
HMGCLL1-209ENST00000515546 CCDC146Q8IYE0 955 aa19.54■□□□□ 0.72
HMGCLL1-209ENST00000515546 N4BP2Q86UW6 1770 aaPredicted RBP19.53■□□□□ 0.72
HMGCLL1-209ENST00000515546 BRCA1P38398 1863 aaKnown RBP19.53■□□□□ 0.72
HMGCLL1-209ENST00000515546 EIF4A1P60842 406 aaKnown RBP19.52■□□□□ 0.72
HMGCLL1-209ENST00000515546 BABAM1Q9NWV8 329 aa19.52■□□□□ 0.72
HMGCLL1-209ENST00000515546 AFDNP55196 1824 aaKnown RBP19.52■□□□□ 0.72
HMGCLL1-209ENST00000515546 NBPF26B4DH59 902 aa19.51■□□□□ 0.71
HMGCLL1-209ENST00000515546 GIGYF1O75420 1035 aaPredicted RBP19.51■□□□□ 0.71
HMGCLL1-209ENST00000515546 CAMTA2O94983 1202 aa19.51■□□□□ 0.71
HMGCLL1-209ENST00000515546 NBPF10Q6P3W6 841 aaKnown RBP19.51■□□□□ 0.71
HMGCLL1-209ENST00000515546 NBPF15Q8N660 670 aa19.51■□□□□ 0.71
HMGCLL1-209ENST00000515546 RRP7AQ9Y3A4 280 aaKnown RBP19.51■□□□□ 0.71
HMGCLL1-209ENST00000515546 TRIM35Q9UPQ4 493 aa19.5■□□□□ 0.71
HMGCLL1-209ENST00000515546 TBC1D2BQ9UPU7 963 aa19.5■□□□□ 0.71
HMGCLL1-209ENST00000515546 ZNF330Q9Y3S2 320 aaPredicted RBP19.5■□□□□ 0.71
HMGCLL1-209ENST00000515546 A0A0G2JLW4 131 aa19.49■□□□□ 0.71
HMGCLL1-209ENST00000515546 DPEP1P16444 411 aa19.49■□□□□ 0.71
HMGCLL1-209ENST00000515546 PIP4K2AP48426 406 aaPredicted RBP19.49■□□□□ 0.71
HMGCLL1-209ENST00000515546 CARMIL3Q8ND23 1372 aa19.48■□□□□ 0.71
HMGCLL1-209ENST00000515546 RGL2O15211 777 aa19.48■□□□□ 0.71
HMGCLL1-209ENST00000515546 KCNA3P22001 575 aa19.48■□□□□ 0.71
HMGCLL1-209ENST00000515546 DZIP3Q86Y13 1208 aaKnown RBP19.48■□□□□ 0.71
HMGCLL1-209ENST00000515546 TSPYL4Q9UJ04 414 aa19.48■□□□□ 0.71
HMGCLL1-209ENST00000515546 SERPINB2P05120 415 aa19.47■□□□□ 0.71
HMGCLL1-209ENST00000515546 TBC1D9BQ66K14 1250 aa19.47■□□□□ 0.71
HMGCLL1-209ENST00000515546 DLEC1Q9Y238 1755 aa19.47■□□□□ 0.71
HMGCLL1-209ENST00000515546 NPM2Q86SE8 214 aaKnown RBP19.46■□□□□ 0.71
HMGCLL1-209ENST00000515546 WWC3Q9ULE0 1092 aa19.46■□□□□ 0.71
HMGCLL1-209ENST00000515546 NEUROD2Q15784 382 aa19.45■□□□□ 0.7
HMGCLL1-209ENST00000515546 CCDC184Q52MB2 194 aa19.45■□□□□ 0.7
HMGCLL1-209ENST00000515546 ERBB4Q15303 1308 aa19.45■□□□□ 0.7
HMGCLL1-209ENST00000515546 ADCY9O60503 1353 aa19.44■□□□□ 0.7
HMGCLL1-209ENST00000515546 ARFGEF1Q9Y6D6 1849 aa19.44■□□□□ 0.7
HMGCLL1-209ENST00000515546 CHL1O00533 1208 aa19.44■□□□□ 0.7
HMGCLL1-209ENST00000515546 CLEC4GQ6UXB4 293 aa19.44■□□□□ 0.7
HMGCLL1-209ENST00000515546 ZNF784Q8NCA9 323 aaPredicted RBP19.44■□□□□ 0.7
HMGCLL1-209ENST00000515546 ANKRD31Q8N7Z5 1873 aa19.43■□□□□ 0.7
HMGCLL1-209ENST00000515546 BICDL1Q6ZP65 573 aa19.43■□□□□ 0.7
HMGCLL1-209ENST00000515546 CHRNA5P30532 468 aa19.42■□□□□ 0.7
HMGCLL1-209ENST00000515546 PRR5LQ6MZQ0 368 aa19.42■□□□□ 0.7
HMGCLL1-209ENST00000515546 PIM2Q9P1W9 311 aa19.42■□□□□ 0.7
HMGCLL1-209ENST00000515546 BCS1LQ9Y276 419 aa19.42■□□□□ 0.7
HMGCLL1-209ENST00000515546 ZNF652Q9Y2D9 606 aa19.42■□□□□ 0.7
HMGCLL1-209ENST00000515546 SETDB2Q96T68 719 aa19.41■□□□□ 0.7
HMGCLL1-209ENST00000515546 COL11A2P13942 1736 aaPredicted RBP19.41■□□□□ 0.7
HMGCLL1-209ENST00000515546 APAF1O14727 1248 aa19.4■□□□□ 0.7
HMGCLL1-209ENST00000515546 ANP32CO43423 234 aa19.4■□□□□ 0.7
HMGCLL1-209ENST00000515546 LRP10Q7Z4F1 713 aa19.4■□□□□ 0.7
HMGCLL1-209ENST00000515546 PDIA6Q15084 440 aa19.39■□□□□ 0.69
HMGCLL1-209ENST00000515546 DALRD3Q5D0E6 543 aaKnown RBP19.39■□□□□ 0.69
HMGCLL1-209ENST00000515546 BRIP1Q9BX63 1249 aa19.39■□□□□ 0.69
HMGCLL1-209ENST00000515546 ATP10DQ9P241 1426 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms