RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CFTRP13569 1480 aa9.21□□□□□ -0.93
NUP54-218ENST00000515460 MSX1P28360 303 aa9.21□□□□□ -0.94
NUP54-218ENST00000515460 GPAT2Q6NUI2 795 aa9.21□□□□□ -0.94
NUP54-218ENST00000515460 KANK3Q6NY19 840 aa9.21□□□□□ -0.94
NUP54-218ENST00000515460 SIRT1Q96EB6 747 aa9.21□□□□□ -0.94
NUP54-218ENST00000515460 WASHC4Q2M389 1173 aa9.2□□□□□ -0.94
NUP54-218ENST00000515460 TMEM132AQ24JP5 1023 aa9.19□□□□□ -0.94
NUP54-218ENST00000515460 PPARGC1BQ86YN6 1023 aaKnown RBP9.19□□□□□ -0.94
NUP54-218ENST00000515460 PLPP7Q8NBV4 271 aa9.19□□□□□ -0.94
NUP54-218ENST00000515460 CFHR5Q9BXR6 569 aa9.19□□□□□ -0.94
NUP54-218ENST00000515460 TDRD9Q8NDG6 1382 aaKnown RBP9.19□□□□□ -0.94
NUP54-218ENST00000515460 PLA2G4AP47712 749 aa9.18□□□□□ -0.94
NUP54-218ENST00000515460 GDF10P55107 478 aa9.18□□□□□ -0.94
NUP54-218ENST00000515460 TARBP1Q13395 1621 aaKnown RBP9.18□□□□□ -0.94
NUP54-218ENST00000515460 WWC1Q8IX03 1113 aa9.18□□□□□ -0.94
NUP54-218ENST00000515460 BEND7Q8N7W2 519 aaPredicted RBP9.18□□□□□ -0.94
NUP54-218ENST00000515460 RHBDD1Q8TEB9 315 aa9.18□□□□□ -0.94
NUP54-218ENST00000515460 TOPBP1Q92547 1522 aa9.18□□□□□ -0.94
NUP54-218ENST00000515460 OXCT2Q9BYC2 517 aaPredicted RBP9.18□□□□□ -0.94
NUP54-218ENST00000515460 CHIC2Q9UKJ5 165 aa9.18□□□□□ -0.94
NUP54-218ENST00000515460 PHF24Q9UPV7 400 aa9.18□□□□□ -0.94
NUP54-218ENST00000515460 DNMT3AQ9Y6K1 912 aaPredicted RBP9.18□□□□□ -0.94
NUP54-218ENST00000515460 MAP2K3P46734 347 aa9.17□□□□□ -0.94
NUP54-218ENST00000515460 SCNN1DP51172 638 aa9.17□□□□□ -0.94
NUP54-218ENST00000515460 FLIIQ13045 1269 aa9.17□□□□□ -0.94
NUP54-218ENST00000515460 MAP7D1Q3KQU3 841 aa9.17□□□□□ -0.94
NUP54-218ENST00000515460 EFHC2Q5JST6 749 aa9.17□□□□□ -0.94
NUP54-218ENST00000515460 AIDAQ96BJ3 306 aa9.17□□□□□ -0.94
NUP54-218ENST00000515460 SERTAD1Q9UHV2 236 aa9.17□□□□□ -0.94
NUP54-218ENST00000515460 MED1Q15648 1581 aaPredicted RBP9.16□□□□□ -0.94
NUP54-218ENST00000515460 INHAP05111 366 aa9.16□□□□□ -0.94
NUP54-218ENST00000515460 SUZ12Q15022 739 aaKnown RBP9.16□□□□□ -0.94
NUP54-218ENST00000515460 PODNQ7Z5L7 613 aa9.16□□□□□ -0.94
NUP54-218ENST00000515460 KLRG1Q96E93 195 aa9.16□□□□□ -0.94
NUP54-218ENST00000515460 ABHD17AQ96GS6 310 aa9.16□□□□□ -0.94
NUP54-218ENST00000515460 PTPRMP28827 1452 aa9.15□□□□□ -0.94
NUP54-218ENST00000515460 PHF20L1A8MW92 1017 aa9.15□□□□□ -0.94
NUP54-218ENST00000515460 PIK3CDO00329 1044 aa9.15□□□□□ -0.94
NUP54-218ENST00000515460 OIP5O43482 229 aa9.15□□□□□ -0.94
NUP54-218ENST00000515460 UBAP2LQ14157 1087 aaKnown RBP9.15□□□□□ -0.94
NUP54-218ENST00000515460 TBC1D9Q6ZT07 1266 aa9.15□□□□□ -0.94
NUP54-218ENST00000515460 MAPKBP1O60336 1514 aa9.15□□□□□ -0.95
NUP54-218ENST00000515460 RAD21O60216 631 aa9.14□□□□□ -0.95
NUP54-218ENST00000515460 GALNT6Q8NCL4 622 aa9.14□□□□□ -0.95
NUP54-218ENST00000515460 COG6Q9Y2V7 657 aa9.14□□□□□ -0.95
NUP54-218ENST00000515460 BMP4P12644 408 aa9.13□□□□□ -0.95
NUP54-218ENST00000515460 SOX11P35716 441 aa9.13□□□□□ -0.95
NUP54-218ENST00000515460 SMTNP53814 917 aa9.13□□□□□ -0.95
NUP54-218ENST00000515460 LBRQ14739 615 aaKnown RBP9.13□□□□□ -0.95
NUP54-218ENST00000515460 NIFKQ9BYG3 293 aaKnown RBP9.13□□□□□ -0.95
NUP54-218ENST00000515460 CEP170Q5SW79 1584 aa9.12□□□□□ -0.95
NUP54-218ENST00000515460 TOP2AP11388 1531 aaKnown RBP9.12□□□□□ -0.95
NUP54-218ENST00000515460 SHISA8B8ZZ34 492 aa9.12□□□□□ -0.95
NUP54-218ENST00000515460 BNIP3LO60238 219 aa9.12□□□□□ -0.95
NUP54-218ENST00000515460 CTBSQ01459 385 aa9.12□□□□□ -0.95
NUP54-218ENST00000515460 C1orf229Q6ZS94 237 aaPredicted RBP9.12□□□□□ -0.95
NUP54-218ENST00000515460 RRAGCQ9HB90 399 aa9.12□□□□□ -0.95
NUP54-218ENST00000515460 LRRC4BQ9NT99 713 aa9.12□□□□□ -0.95
NUP54-218ENST00000515460 ATXN7L1Q9ULK2 861 aaPredicted RBP9.12□□□□□ -0.95
NUP54-218ENST00000515460 PPRC1Q5VV67 1664 aaKnown RBP9.12□□□□□ -0.95
NUP54-218ENST00000515460 C2CD2LO14523 706 aa9.11□□□□□ -0.95
NUP54-218ENST00000515460 SKIP12755 728 aa9.11□□□□□ -0.95
NUP54-218ENST00000515460 UBTFP17480 764 aaKnown RBP9.11□□□□□ -0.95
NUP54-218ENST00000515460 FGFR3P22607 806 aa9.11□□□□□ -0.95
NUP54-218ENST00000515460 SNRPNP63162 240 aaKnown RBP9.11□□□□□ -0.95
NUP54-218ENST00000515460 DCAF5Q96JK2 942 aa9.11□□□□□ -0.95
NUP54-218ENST00000515460 CRISPLD1Q9H336 500 aa9.11□□□□□ -0.95
NUP54-218ENST00000515460 CCDC88BA6NC98 1476 aa9.1□□□□□ -0.95
NUP54-218ENST00000515460 RAD54L2Q9Y4B4 1467 aa9.1□□□□□ -0.95
NUP54-218ENST00000515460 TMEM229AB2RXF0 380 aa9.1□□□□□ -0.95
NUP54-218ENST00000515460 ARSJQ5FYB0 599 aaPredicted RBP9.1□□□□□ -0.95
NUP54-218ENST00000515460 EDARADDQ8WWZ3 215 aa9.1□□□□□ -0.95
NUP54-218ENST00000515460 ZCCHC2Q9C0B9 1178 aaKnown RBP9.1□□□□□ -0.95
NUP54-218ENST00000515460 IGHA1P01876 353 aa9.09□□□□□ -0.95
NUP54-218ENST00000515460 FOXK2Q01167 660 aa9.09□□□□□ -0.95
NUP54-218ENST00000515460 EML3Q32P44 896 aa9.09□□□□□ -0.95
NUP54-218ENST00000515460 POM121Q96HA1 1249 aa9.09□□□□□ -0.95
NUP54-218ENST00000515460 NDFIP2Q9NV92 336 aa9.09□□□□□ -0.95
NUP54-218ENST00000515460 GDF2Q9UK05 429 aaPredicted RBP9.09□□□□□ -0.95
NUP54-218ENST00000515460 A6NJY4 79 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 ATP4AP20648 1035 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 AMPD1P23109 780 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 PSME1Q06323 249 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 PLA2G4EQ3MJ16 856 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 FIGNL1Q6PIW4 674 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 GOLGA6L1Q8N7Z2 621 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 CABP1Q9NZU7 370 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 GGA1Q9UJY5 639 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 PCDHGC4Q9Y5F7 938 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 PCDHGA11Q9Y5H2 935 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 PARP3Q9Y6F1 533 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 USP3Q9Y6I4 520 aa9.08□□□□□ -0.96
NUP54-218ENST00000515460 A0A1W2PNR3 127 aa9.07□□□□□ -0.96
NUP54-218ENST00000515460 CDK2AP1O14519 115 aa9.07□□□□□ -0.96
NUP54-218ENST00000515460 NBPF1Q3BBV0 1214 aa9.07□□□□□ -0.96
NUP54-218ENST00000515460 DEPDC4Q8N2C3 294 aa9.07□□□□□ -0.96
NUP54-218ENST00000515460 C1orf216Q8TAB5 229 aa9.07□□□□□ -0.96
NUP54-218ENST00000515460 SLC4A9Q96Q91 983 aa9.07□□□□□ -0.96
NUP54-218ENST00000515460 ALG2Q9H553 416 aa9.07□□□□□ -0.96
NUP54-218ENST00000515460 ATXN7O15265 892 aaPredicted RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms