RNA–Protein interactions for RNA: ENST00000513525.1

CCL28-203, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best) BASIC

Gene CCL28, Length 1,518 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-203ENST00000513525 ASAP1Q9ULH1 1129 aa13.33□□□□□ -0.28
CCL28-203ENST00000513525 COL3A1P02461 1466 aaPredicted RBP13.32□□□□□ -0.28
CCL28-203ENST00000513525 MTHFSP49914 203 aa13.32□□□□□ -0.28
CCL28-203ENST00000513525 SULT6B1Q6IMI4 303 aa13.32□□□□□ -0.28
CCL28-203ENST00000513525 ZNF530Q6P9A1 599 aaPredicted RBP13.32□□□□□ -0.28
CCL28-203ENST00000513525 RASEFQ8IZ41 740 aa13.32□□□□□ -0.28
CCL28-203ENST00000513525 AK7Q96M32 723 aa13.32□□□□□ -0.28
CCL28-203ENST00000513525 ATG3Q9NT62 314 aa13.32□□□□□ -0.28
CCL28-203ENST00000513525 SSFA2P28290 1259 aa13.31□□□□□ -0.28
CCL28-203ENST00000513525 LINC00116Q8NCU8 138 aa13.31□□□□□ -0.28
CCL28-203ENST00000513525 SIPA1L3O60292 1781 aaPredicted RBP13.31□□□□□ -0.28
CCL28-203ENST00000513525 UBR2Q8IWV8 1755 aa13.31□□□□□ -0.28
CCL28-203ENST00000513525 MRC1P22897 1456 aa13.3□□□□□ -0.28
CCL28-203ENST00000513525 ATP6V1AP38606 617 aa13.3□□□□□ -0.28
CCL28-203ENST00000513525 ITPK1Q13572 414 aa13.3□□□□□ -0.28
CCL28-203ENST00000513525 C1orf141Q5JVX7 400 aa13.3□□□□□ -0.28
CCL28-203ENST00000513525 CC2D1BQ5T0F9 858 aaKnown RBP13.29□□□□□ -0.28
CCL28-203ENST00000513525 AMIGO3Q86WK7 504 aa13.29□□□□□ -0.28
CCL28-203ENST00000513525 COLQQ9Y215 455 aaPredicted RBP13.29□□□□□ -0.28
CCL28-203ENST00000513525 KIAA1551Q9HCM1 1747 aa13.28□□□□□ -0.28
CCL28-203ENST00000513525 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.28□□□□□ -0.28
CCL28-203ENST00000513525 CENPBP07199 599 aaPredicted RBP13.28□□□□□ -0.28
CCL28-203ENST00000513525 CABP4P57796 275 aa13.28□□□□□ -0.28
CCL28-203ENST00000513525 MSL1Q68DK7 614 aa13.28□□□□□ -0.28
CCL28-203ENST00000513525 DIAPH1O60610 1272 aaKnown RBP13.27□□□□□ -0.29
CCL28-203ENST00000513525 AKAP4Q5JQC9 854 aa13.27□□□□□ -0.29
CCL28-203ENST00000513525 CDAN1Q8IWY9 1227 aa13.27□□□□□ -0.29
CCL28-203ENST00000513525 KLHL34Q8N239 644 aa13.27□□□□□ -0.29
CCL28-203ENST00000513525 SLC4A9Q96Q91 983 aa13.27□□□□□ -0.29
CCL28-203ENST00000513525 TRIM35Q9UPQ4 493 aa13.27□□□□□ -0.29
CCL28-203ENST00000513525 BRCA1P38398 1863 aaKnown RBP13.26□□□□□ -0.29
CCL28-203ENST00000513525 GNPATO15228 680 aa13.26□□□□□ -0.29
CCL28-203ENST00000513525 PHF14O94880 888 aa13.26□□□□□ -0.29
CCL28-203ENST00000513525 RC3H1Q5TC82 1133 aaKnown RBP13.26□□□□□ -0.29
CCL28-203ENST00000513525 NLGN2Q8NFZ4 835 aa13.26□□□□□ -0.29
CCL28-203ENST00000513525 ZBTB47Q9UFB7 747 aaPredicted RBP13.26□□□□□ -0.29
CCL28-203ENST00000513525 PCDHB13Q9Y5F0 798 aa13.26□□□□□ -0.29
CCL28-203ENST00000513525 CNTNAP4Q9C0A0 1308 aa13.26□□□□□ -0.29
CCL28-203ENST00000513525 CD2APQ9Y5K6 639 aa13.25□□□□□ -0.29
CCL28-203ENST00000513525 N4BP2Q86UW6 1770 aaPredicted RBP13.25□□□□□ -0.29
CCL28-203ENST00000513525 HMOX1P09601 288 aa13.24□□□□□ -0.29
CCL28-203ENST00000513525 GPR162Q16538 588 aa13.24□□□□□ -0.29
CCL28-203ENST00000513525 SMIM5Q71RC9 77 aa13.24□□□□□ -0.29
CCL28-203ENST00000513525 NFATC2IPQ8NCF5 419 aa13.24□□□□□ -0.29
CCL28-203ENST00000513525 RTCBQ9Y3I0 505 aaKnown RBP13.23□□□□□ -0.29
CCL28-203ENST00000513525 KCPQ6ZWJ8 1503 aa13.23□□□□□ -0.29
CCL28-203ENST00000513525 PLCD3Q8N3E9 789 aa13.23□□□□□ -0.29
CCL28-203ENST00000513525 SLC52A2Q9HAB3 445 aa13.23□□□□□ -0.29
CCL28-203ENST00000513525 DLG5Q8TDM6 1919 aa13.22□□□□□ -0.29
CCL28-203ENST00000513525 RNMTO43148 476 aaKnown RBP13.22□□□□□ -0.29
CCL28-203ENST00000513525 RPS6KA4O75676 772 aa13.22□□□□□ -0.29
CCL28-203ENST00000513525 MTHFSDQ2M296 383 aaKnown RBP13.22□□□□□ -0.29
CCL28-203ENST00000513525 AFDNP55196 1824 aaKnown RBP13.21□□□□□ -0.29
CCL28-203ENST00000513525 ARFGEF1Q9Y6D6 1849 aa13.21□□□□□ -0.29
CCL28-203ENST00000513525 PTCD1O75127 700 aaKnown RBP13.21□□□□□ -0.29
CCL28-203ENST00000513525 DDX10Q13206 875 aaKnown RBP13.21□□□□□ -0.29
CCL28-203ENST00000513525 TRAPPC3LQ5T215 181 aa13.21□□□□□ -0.29
CCL28-203ENST00000513525 SLAIN1Q8ND83 568 aa13.21□□□□□ -0.29
CCL28-203ENST00000513525 LGR6Q9HBX8 967 aa13.21□□□□□ -0.29
CCL28-203ENST00000513525 GRIN3BO60391 1043 aa13.2□□□□□ -0.3
CCL28-203ENST00000513525 YBX3P16989 372 aaKnown RBP eCLIP13.19□□□□□ -0.3
CCL28-203ENST00000513525 CRKLP46109 303 aaKnown RBP13.19□□□□□ -0.3
CCL28-203ENST00000513525 NLGN1Q8N2Q7 840 aa13.19□□□□□ -0.3
CCL28-203ENST00000513525 ZNF784Q8NCA9 323 aaPredicted RBP13.19□□□□□ -0.3
CCL28-203ENST00000513525 ARHGEF1Q92888 912 aaKnown RBP13.19□□□□□ -0.3
CCL28-203ENST00000513525 U2SURPO15042 1029 aaKnown RBP13.18□□□□□ -0.3
CCL28-203ENST00000513525 NRXN2Q9P2S2 1712 aa13.18□□□□□ -0.3
CCL28-203ENST00000513525 C10orf71Q711Q0 1435 aa13.18□□□□□ -0.3
CCL28-203ENST00000513525 MMP10P09238 476 aa13.18□□□□□ -0.3
CCL28-203ENST00000513525 GYS1P13807 737 aa13.18□□□□□ -0.3
CCL28-203ENST00000513525 RFC4P35249 363 aa13.18□□□□□ -0.3
CCL28-203ENST00000513525 CNGB1Q14028 1251 aaPredicted RBP13.18□□□□□ -0.3
CCL28-203ENST00000513525 GAS2L2Q8NHY3 880 aa13.18□□□□□ -0.3
CCL28-203ENST00000513525 CFAP53Q96M91 514 aa13.18□□□□□ -0.3
CCL28-203ENST00000513525 PLCG2P16885 1265 aa13.17□□□□□ -0.3
CCL28-203ENST00000513525 DLEC1Q9Y238 1755 aa13.16□□□□□ -0.3
CCL28-203ENST00000513525 SCN7AQ01118 1682 aa13.16□□□□□ -0.3
CCL28-203ENST00000513525 PXDNLA1KZ92 1463 aa13.16□□□□□ -0.3
CCL28-203ENST00000513525 PPP2R1AP30153 589 aa13.16□□□□□ -0.3
CCL28-203ENST00000513525 VSIG10Q8N0Z9 540 aa13.16□□□□□ -0.3
CCL28-203ENST00000513525 USP42Q9H9J4 1324 aaKnown RBP13.15□□□□□ -0.3
CCL28-203ENST00000513525 GNAT3A8MTJ3 354 aa13.15□□□□□ -0.3
CCL28-203ENST00000513525 SLC39A6Q13433 755 aa13.15□□□□□ -0.3
CCL28-203ENST00000513525 INTS5Q6P9B9 1019 aaKnown RBP13.15□□□□□ -0.3
CCL28-203ENST00000513525 DNAJC10Q8IXB1 793 aa13.15□□□□□ -0.3
CCL28-203ENST00000513525 RSPH6AQ9H0K4 717 aa13.15□□□□□ -0.3
CCL28-203ENST00000513525 CCDC87Q9NVE4 849 aa13.15□□□□□ -0.3
CCL28-203ENST00000513525 CEMIPQ8WUJ3 1361 aa13.15□□□□□ -0.3
CCL28-203ENST00000513525 BCORQ6W2J9 1755 aa13.15□□□□□ -0.3
CCL28-203ENST00000513525 CYP19A1P11511 503 aaPredicted RBP13.14□□□□□ -0.31
CCL28-203ENST00000513525 NUDCQ9Y266 331 aa13.14□□□□□ -0.31
CCL28-203ENST00000513525 SOS1Q07889 1333 aaPredicted RBP13.14□□□□□ -0.31
CCL28-203ENST00000513525 CCER2I3L3R5 266 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 ST18O60284 1047 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 TGFB2P61812 414 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 IL17REQ8NFR9 667 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 FAM212AQ96EL1 285 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 TMEM106CQ9BVX2 250 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 LAMB4A4D0S4 1761 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 SBF1O95248 1867 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms