RNA–Protein interactions for RNA: ENST00000512813.5

CLCN3-208, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-208ENST00000512813 MAP2K2P36507 400 aa13.57□□□□□ -0.24
CLCN3-208ENST00000512813 NKX1-1Q15270 411 aaPredicted RBP13.57□□□□□ -0.24
CLCN3-208ENST00000512813 ADAMTS7Q9UKP4 1686 aa13.56□□□□□ -0.24
CLCN3-208ENST00000512813 DLL1O00548 723 aa13.56□□□□□ -0.24
CLCN3-208ENST00000512813 EAPPQ56P03 285 aaPredicted RBP13.56□□□□□ -0.24
CLCN3-208ENST00000512813 CYP4F22Q6NT55 531 aa13.56□□□□□ -0.24
CLCN3-208ENST00000512813 PAXIP1Q6ZW49 1069 aaPredicted RBP13.56□□□□□ -0.24
CLCN3-208ENST00000512813 CNTROBQ8N137 903 aa13.56□□□□□ -0.24
CLCN3-208ENST00000512813 NBPF15Q8N660 670 aa13.56□□□□□ -0.24
CLCN3-208ENST00000512813 TMOD3Q9NYL9 352 aa13.56□□□□□ -0.24
CLCN3-208ENST00000512813 USP42Q9H9J4 1324 aaKnown RBP13.56□□□□□ -0.24
CLCN3-208ENST00000512813 LTBP3Q9NS15 1303 aa13.56□□□□□ -0.24
CLCN3-208ENST00000512813 MYH14Q7Z406 1995 aaKnown RBP13.55□□□□□ -0.24
CLCN3-208ENST00000512813 AMPHP49418 695 aa13.55□□□□□ -0.24
CLCN3-208ENST00000512813 AFDNP55196 1824 aaKnown RBP13.55□□□□□ -0.24
CLCN3-208ENST00000512813 GRM1Q13255 1194 aa13.54□□□□□ -0.24
CLCN3-208ENST00000512813 SLC4A9Q96Q91 983 aa13.54□□□□□ -0.24
CLCN3-208ENST00000512813 DDX21Q9NR30 783 aaKnown RBP eCLIP13.54□□□□□ -0.24
CLCN3-208ENST00000512813 ATG3Q9NT62 314 aa13.54□□□□□ -0.24
CLCN3-208ENST00000512813 SRP68Q9UHB9 627 aaKnown RBP13.54□□□□□ -0.24
CLCN3-208ENST00000512813 CLEC11AQ9Y240 323 aa13.54□□□□□ -0.24
CLCN3-208ENST00000512813 AOC2O75106 756 aa13.53□□□□□ -0.24
CLCN3-208ENST00000512813 TM4SF1P30408 202 aa13.53□□□□□ -0.24
CLCN3-208ENST00000512813 FXR1P51114 621 aaKnown RBP eCLIP13.53□□□□□ -0.24
CLCN3-208ENST00000512813 BRPF1P55201 1214 aaPredicted RBP13.53□□□□□ -0.24
CLCN3-208ENST00000512813 MAP1SQ66K74 1059 aaPredicted RBP13.53□□□□□ -0.24
CLCN3-208ENST00000512813 PNMA8AQ86V59 439 aaPredicted RBP13.52□□□□□ -0.25
CLCN3-208ENST00000512813 HACL1Q9UJ83 578 aa13.52□□□□□ -0.25
CLCN3-208ENST00000512813 EPHX2P34913 555 aa13.51□□□□□ -0.25
CLCN3-208ENST00000512813 TAOK3Q9H2K8 898 aa13.51□□□□□ -0.25
CLCN3-208ENST00000512813 C2CD5Q86YS7 1000 aa13.5□□□□□ -0.25
CLCN3-208ENST00000512813 TLL2Q9Y6L7 1015 aa13.5□□□□□ -0.25
CLCN3-208ENST00000512813 A0A0C4DFX4 3053 aa13.49□□□□□ -0.25
CLCN3-208ENST00000512813 INSRP06213 1382 aa13.49□□□□□ -0.25
CLCN3-208ENST00000512813 TRPM7Q96QT4 1865 aa13.49□□□□□ -0.25
CLCN3-208ENST00000512813 H0YIN7 160 aa13.48□□□□□ -0.25
CLCN3-208ENST00000512813 C21orf2O43822 256 aa13.48□□□□□ -0.25
CLCN3-208ENST00000512813 HDGFL2Q7Z4V5 671 aaPredicted RBP13.48□□□□□ -0.25
CLCN3-208ENST00000512813 NCAPD2Q15021 1401 aa13.47□□□□□ -0.25
CLCN3-208ENST00000512813 A0A1W2PP64 1363 aa13.46□□□□□ -0.25
CLCN3-208ENST00000512813 CARMIL3Q8ND23 1372 aa13.46□□□□□ -0.25
CLCN3-208ENST00000512813 FBLN1P23142 703 aa13.46□□□□□ -0.25
CLCN3-208ENST00000512813 RBM42Q9BTD8 480 aaKnown RBP13.46□□□□□ -0.25
CLCN3-208ENST00000512813 COL11A2P13942 1736 aaPredicted RBP13.46□□□□□ -0.25
CLCN3-208ENST00000512813 ZNF541Q9H0D2 1346 aa13.45□□□□□ -0.26
CLCN3-208ENST00000512813 CRKLP46109 303 aaKnown RBP13.45□□□□□ -0.26
CLCN3-208ENST00000512813 CST9Q5W186 159 aa13.45□□□□□ -0.26
CLCN3-208ENST00000512813 CIAPIN1Q6FI81 312 aa13.45□□□□□ -0.26
CLCN3-208ENST00000512813 COG3Q96JB2 828 aa13.45□□□□□ -0.26
CLCN3-208ENST00000512813 SPG7Q9UQ90 795 aa13.45□□□□□ -0.26
CLCN3-208ENST00000512813 ANKRD31Q8N7Z5 1873 aa13.44□□□□□ -0.26
CLCN3-208ENST00000512813 RNF123Q5XPI4 1314 aa13.44□□□□□ -0.26
CLCN3-208ENST00000512813 FMR1Q06787 632 aaKnown RBP eCLIP13.44□□□□□ -0.26
CLCN3-208ENST00000512813 NFIXQ14938 502 aa13.44□□□□□ -0.26
CLCN3-208ENST00000512813 HHIPL1Q96JK4 782 aa13.44□□□□□ -0.26
CLCN3-208ENST00000512813 SZT2Q5T011 3432 aa13.43□□□□□ -0.26
CLCN3-208ENST00000512813 TJP1Q07157 1748 aa13.43□□□□□ -0.26
CLCN3-208ENST00000512813 SAPCD2Q86UD0 394 aa13.43□□□□□ -0.26
CLCN3-208ENST00000512813 ARFGEF2Q9Y6D5 1785 aa13.43□□□□□ -0.26
CLCN3-208ENST00000512813 SERPINB2P05120 415 aa13.42□□□□□ -0.26
CLCN3-208ENST00000512813 USPL1Q5W0Q7 1092 aa13.42□□□□□ -0.26
CLCN3-208ENST00000512813 TERF2IPQ9NYB0 399 aa13.42□□□□□ -0.26
CLCN3-208ENST00000512813 PDZRN3Q9UPQ7 1066 aa13.42□□□□□ -0.26
CLCN3-208ENST00000512813 ZPR1O75312 459 aa13.41□□□□□ -0.26
CLCN3-208ENST00000512813 PHKG2P15735 406 aa13.41□□□□□ -0.26
CLCN3-208ENST00000512813 RRS1Q15050 365 aaKnown RBP13.41□□□□□ -0.26
CLCN3-208ENST00000512813 SOGA3Q5TF21 947 aa13.41□□□□□ -0.26
CLCN3-208ENST00000512813 SLC17A8Q8NDX2 589 aa13.41□□□□□ -0.26
CLCN3-208ENST00000512813 ZNF622Q969S3 477 aaKnown RBP eCLIP13.41□□□□□ -0.26
CLCN3-208ENST00000512813 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.41□□□□□ -0.263e-8■■■□□ 17.5
CLCN3-208ENST00000512813 CTU1Q7Z7A3 348 aaKnown RBP13.4□□□□□ -0.26
CLCN3-208ENST00000512813 IFNL2Q8IZJ0 200 aa13.4□□□□□ -0.26
CLCN3-208ENST00000512813 TMC1Q8TDI8 760 aa13.4□□□□□ -0.26
CLCN3-208ENST00000512813 SLC12A5Q9H2X9 1139 aa13.4□□□□□ -0.26
CLCN3-208ENST00000512813 SAGE1Q9NXZ1 904 aa13.4□□□□□ -0.26
CLCN3-208ENST00000512813 HPS5Q9UPZ3 1129 aa13.4□□□□□ -0.26
CLCN3-208ENST00000512813 SLX4Q8IY92 1834 aa13.39□□□□□ -0.27
CLCN3-208ENST00000512813 TRAF5O00463 557 aa13.39□□□□□ -0.27
CLCN3-208ENST00000512813 NOGQ13253 232 aa13.39□□□□□ -0.27
CLCN3-208ENST00000512813 HSP90AB2PQ58FF8 381 aa13.39□□□□□ -0.27
CLCN3-208ENST00000512813 FLT4P35916 1363 aa13.39□□□□□ -0.27
CLCN3-208ENST00000512813 TRIOBPQ9H2D6 2365 aa13.39□□□□□ -0.27
CLCN3-208ENST00000512813 MKI67P46013 3256 aaKnown RBP13.38□□□□□ -0.27
CLCN3-208ENST00000512813 CACNA1SQ13698 1873 aa13.38□□□□□ -0.27
CLCN3-208ENST00000512813 BCORQ6W2J9 1755 aa13.38□□□□□ -0.27
CLCN3-208ENST00000512813 KIF24Q5T7B8 1368 aa13.38□□□□□ -0.27
CLCN3-208ENST00000512813 TONSLQ96HA7 1378 aa13.38□□□□□ -0.27
CLCN3-208ENST00000512813 PITPNM2Q9BZ72 1349 aa13.38□□□□□ -0.27
CLCN3-208ENST00000512813 ERVV-2B6SEH9 535 aa13.37□□□□□ -0.27
CLCN3-208ENST00000512813 PDE6BP35913 854 aa13.37□□□□□ -0.27
CLCN3-208ENST00000512813 INTS5Q6P9B9 1019 aaKnown RBP13.37□□□□□ -0.27
CLCN3-208ENST00000512813 GPC2Q8N158 579 aa13.37□□□□□ -0.27
CLCN3-208ENST00000512813 NARFQ9UHQ1 456 aa13.37□□□□□ -0.27
CLCN3-208ENST00000512813 SOS1Q07889 1333 aaPredicted RBP13.37□□□□□ -0.27
CLCN3-208ENST00000512813 RAB3GAP2Q9H2M9 1393 aa13.36□□□□□ -0.27
CLCN3-208ENST00000512813 PRPF40BQ6NWY9 871 aaKnown RBP13.36□□□□□ -0.27
CLCN3-208ENST00000512813 ZIC5Q96T25 663 aa13.36□□□□□ -0.27
CLCN3-208ENST00000512813 BRIP1Q9BX63 1249 aa13.36□□□□□ -0.27
CLCN3-208ENST00000512813 SCN11AQ9UI33 1791 aa13.35□□□□□ -0.27
CLCN3-208ENST00000512813 FZD9O00144 591 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms