RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 HOXC8P31273 242 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 NUCB1Q02818 461 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 TSNAXIP1Q2TAA8 658 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 EHBP1Q8NDI1 1231 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 FRAT1Q92837 279 aaPredicted RBP4.18□□□□□ -1.74
USP53-205ENST00000509769 BLMP54132 1417 aaPredicted RBP4.18□□□□□ -1.74
USP53-205ENST00000509769 SMC2O95347 1197 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 ATP7AQ04656 1500 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 IFFO1Q0D2I5 559 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 DYNC1I2Q13409 638 aaKnown RBP4.18□□□□□ -1.74
USP53-205ENST00000509769 CCDC27Q2M243 656 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 CACNA2D4Q7Z3S7 1137 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 FYCO1Q9BQS8 1478 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 NBPF3Q9H094 633 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 EBAG9O00559 213 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 DIAPH1O60610 1272 aaKnown RBP4.18□□□□□ -1.74
USP53-205ENST00000509769 PLEKHG5O94827 1062 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 SKILP12757 684 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 C1QTNF8P60827 252 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 IKQ13123 557 aaPredicted RBP4.18□□□□□ -1.74
USP53-205ENST00000509769 NBPF6Q5VWK0 638 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 CEP128Q6ZU80 1094 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 PHLDB2Q86SQ0 1253 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 NBPF5PQ86XG9 351 aaPredicted RBP4.18□□□□□ -1.74
USP53-205ENST00000509769 STMN2Q93045 179 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 NBPF4Q96M43 638 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 DHX29Q7Z478 1369 aaKnown RBP4.17□□□□□ -1.74
USP53-205ENST00000509769 PPFIA2O75334 1257 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 EIF5P55010 431 aaKnown RBP4.17□□□□□ -1.74
USP53-205ENST00000509769 CAMK4Q16566 473 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 GORABQ5T7V8 394 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 TAX1BP1Q86VP1 789 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 WDR63Q8IWG1 891 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 CCAR1Q8IX12 1150 aaKnown RBP4.17□□□□□ -1.74
USP53-205ENST00000509769 USP6NLQ92738 828 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 ANAPC15P60006 121 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 PDCD2Q16342 344 aaPredicted RBP4.17□□□□□ -1.74
USP53-205ENST00000509769 CCDC181Q5TID7 509 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 MSL1Q68DK7 614 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 JMYQ8N9B5 988 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 FAM210AQ96ND0 272 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 TAOK3Q9H2K8 898 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 BCAP29Q9UHQ4 241 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 DAAM1Q9Y4D1 1078 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 MAP4K4O95819 1239 aaPredicted RBP4.17□□□□□ -1.74
USP53-205ENST00000509769 RLBP1P12271 317 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 CNGA1P29973 690 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 GBP1P32455 592 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 LACTBP83111 547 aaPredicted RBP4.17□□□□□ -1.74
USP53-205ENST00000509769 CKAP4Q07065 602 aaKnown RBP4.17□□□□□ -1.74
USP53-205ENST00000509769 PPP1R9BQ96SB3 815 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 STIM2Q9P246 746 aa4.17□□□□□ -1.74
USP53-205ENST00000509769 POTEB3A0JP26 581 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 NBPF7P0C2Y1 421 aaPredicted RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 TMF1P82094 1093 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 TRIM29Q14134 588 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 HSP90AB4PQ58FF6 505 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 POTEBQ6S5H4 581 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 NBPF11Q86T75 865 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 ZNF397Q8NF99 534 aaPredicted RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 SMARCC2Q8TAQ2 1214 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 C16orf45Q96MC5 204 aaPredicted RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 ZNF396Q96N95 335 aaPredicted RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 QTRT2Q9H974 415 aaKnown RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 FAN1Q9Y2M0 1017 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 CASQ2O14958 399 aaPredicted RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 CCDC172P0C7W6 258 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 ZFXP17010 805 aaPredicted RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 HMGB2P26583 209 aaKnown RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 IRX1P78414 480 aaPredicted RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 PROSER2Q86WR7 435 aaPredicted RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 TRIM63Q969Q1 353 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 CCDC97Q96F63 343 aaPredicted RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 SSBP05455 408 aaKnown RBP eCLIP4.16□□□□□ -1.74
USP53-205ENST00000509769 ZKSCAN1P17029 563 aaPredicted RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 CETN2P41208 172 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 PPP4R3BQ5MIZ7 849 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 MIER3Q7Z3K6 550 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 CCDC68Q9H2F9 335 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 RAI14Q9P0K7 980 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 MTUS1Q9ULD2 1270 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 CTAGE5O15320 804 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 ATF3P18847 181 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 TMED1Q13445 227 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 TRPC3Q13507 836 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 PTPN14Q15678 1187 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 SLC4A8Q2Y0W8 1093 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 ARHGAP24Q8N264 748 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 DNAI2Q9GZS0 605 aa4.16□□□□□ -1.74
USP53-205ENST00000509769 SENP3Q9H4L4 574 aaPredicted RBP4.16□□□□□ -1.74
USP53-205ENST00000509769 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.16□□□□□ -1.74
USP53-205ENST00000509769 UNC13BO14795 1591 aa4.15□□□□□ -1.74
USP53-205ENST00000509769 USO1O60763 962 aaKnown RBP4.15□□□□□ -1.74
USP53-205ENST00000509769 TNNT1P13805 278 aa4.15□□□□□ -1.74
USP53-205ENST00000509769 GFAPP14136 432 aa4.15□□□□□ -1.74
USP53-205ENST00000509769 LRRC23Q53EV4 343 aaPredicted RBP4.15□□□□□ -1.74
USP53-205ENST00000509769 INTS3Q68E01 1043 aaKnown RBP4.15□□□□□ -1.74
USP53-205ENST00000509769 TTC19Q6DKK2 380 aaPredicted RBP4.15□□□□□ -1.74
USP53-205ENST00000509769 NAA16Q6N069 864 aaPredicted RBP4.15□□□□□ -1.74
USP53-205ENST00000509769 CCDC121Q6ZUS5 278 aa4.15□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms