RNA–Protein interactions for RNA: ENST00000506858.2

SCAMP1-202, Transcript of secretory carrier membrane protein 1, humanhuman

TSL 1 (best)

Gene SCAMP1, Length 1,603 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP1-202ENST00000506858 DNAJC10Q8IXB1 793 aa11.5□□□□□ -0.57
SCAMP1-202ENST00000506858 TSPYL6Q8N831 410 aa11.5□□□□□ -0.57
SCAMP1-202ENST00000506858 C8orf58Q8NAV2 365 aa11.5□□□□□ -0.57
SCAMP1-202ENST00000506858 NECTIN2Q92692 538 aa11.5□□□□□ -0.57
SCAMP1-202ENST00000506858 IFT57Q9NWB7 429 aa11.5□□□□□ -0.57
SCAMP1-202ENST00000506858 CCNL1Q9UK58 526 aaPredicted RBP11.5□□□□□ -0.57
SCAMP1-202ENST00000506858 TCERG1O14776 1098 aaKnown RBP11.49□□□□□ -0.57
SCAMP1-202ENST00000506858 GNAI1P63096 354 aa11.49□□□□□ -0.57
SCAMP1-202ENST00000506858 GOLGA2Q08379 1002 aa11.49□□□□□ -0.57
SCAMP1-202ENST00000506858 SMARCC1Q92922 1105 aaPredicted RBP11.49□□□□□ -0.57
SCAMP1-202ENST00000506858 TNS1Q9HBL0 1735 aaKnown RBP11.49□□□□□ -0.57
SCAMP1-202ENST00000506858 PLSCR1O15162 318 aa11.49□□□□□ -0.57
SCAMP1-202ENST00000506858 EXOSC9Q06265 439 aaKnown RBP11.49□□□□□ -0.57
SCAMP1-202ENST00000506858 SLFN5Q08AF3 891 aa11.49□□□□□ -0.57
SCAMP1-202ENST00000506858 LINC00116Q8NCU8 138 aa11.49□□□□□ -0.57
SCAMP1-202ENST00000506858 USP16Q9Y5T5 823 aa11.49□□□□□ -0.57
SCAMP1-202ENST00000506858 SIPA1L3O60292 1781 aaPredicted RBP11.49□□□□□ -0.57
SCAMP1-202ENST00000506858 FANCIQ9NVI1 1328 aa11.48□□□□□ -0.57
SCAMP1-202ENST00000506858 EIF2S2P20042 333 aaKnown RBP11.48□□□□□ -0.57
SCAMP1-202ENST00000506858 CALD1Q05682 793 aaKnown RBP11.48□□□□□ -0.57
SCAMP1-202ENST00000506858 FMNL2Q96PY5 1086 aa11.48□□□□□ -0.57
SCAMP1-202ENST00000506858 KCPQ6ZWJ8 1503 aa11.47□□□□□ -0.57
SCAMP1-202ENST00000506858 A1BGP04217 495 aa11.47□□□□□ -0.57
SCAMP1-202ENST00000506858 AMIGO3Q86WK7 504 aa11.47□□□□□ -0.57
SCAMP1-202ENST00000506858 CCDC125Q86Z20 511 aa11.47□□□□□ -0.57
SCAMP1-202ENST00000506858 NGEFQ8N5V2 710 aa11.47□□□□□ -0.57
SCAMP1-202ENST00000506858 IL16Q14005 1332 aa11.47□□□□□ -0.57
SCAMP1-202ENST00000506858 ZBED9Q6R2W3 1325 aa11.47□□□□□ -0.57
SCAMP1-202ENST00000506858 HEG1Q9ULI3 1381 aa11.47□□□□□ -0.57
SCAMP1-202ENST00000506858 GIGYF1O75420 1035 aaPredicted RBP11.46□□□□□ -0.57
SCAMP1-202ENST00000506858 ANXA1P04083 346 aa11.46□□□□□ -0.57
SCAMP1-202ENST00000506858 DUSP27Q5VZP5 1158 aa11.46□□□□□ -0.57
SCAMP1-202ENST00000506858 ANO8Q9HCE9 1232 aaPredicted RBP11.46□□□□□ -0.57
SCAMP1-202ENST00000506858 SOCS7O14512 581 aa11.46□□□□□ -0.58
SCAMP1-202ENST00000506858 ZNF827Q17R98 1081 aa11.46□□□□□ -0.58
SCAMP1-202ENST00000506858 E9PSI1 815 aa11.45□□□□□ -0.58
SCAMP1-202ENST00000506858 SNRPA1P09661 255 aaKnown RBP11.45□□□□□ -0.58
SCAMP1-202ENST00000506858 CYP19A1P11511 503 aaPredicted RBP11.45□□□□□ -0.58
SCAMP1-202ENST00000506858 TRMT2AQ8IZ69 625 aaKnown RBP11.45□□□□□ -0.58
SCAMP1-202ENST00000506858 CANXP27824 592 aaKnown RBP11.44□□□□□ -0.58
SCAMP1-202ENST00000506858 INTS5Q6P9B9 1019 aaKnown RBP11.44□□□□□ -0.58
SCAMP1-202ENST00000506858 MYH16Q9H6N6 1097 aa11.44□□□□□ -0.58
SCAMP1-202ENST00000506858 BABAM1Q9NWV8 329 aa11.44□□□□□ -0.58
SCAMP1-202ENST00000506858 KDM3BQ7LBC6 1761 aa11.44□□□□□ -0.58
SCAMP1-202ENST00000506858 PAPPAQ13219 1627 aa11.43□□□□□ -0.58
SCAMP1-202ENST00000506858 CRKLP46109 303 aaKnown RBP11.43□□□□□ -0.58
SCAMP1-202ENST00000506858 PROSER3Q2NL68 480 aa11.43□□□□□ -0.58
SCAMP1-202ENST00000506858 TWISTNBQ3B726 338 aaPredicted RBP11.43□□□□□ -0.58
SCAMP1-202ENST00000506858 SLC27A3Q5K4L6 730 aa11.43□□□□□ -0.58
SCAMP1-202ENST00000506858 PDGFDQ9GZP0 370 aaPredicted RBP11.43□□□□□ -0.58
SCAMP1-202ENST00000506858 ZBTB1Q9Y2K1 713 aa11.43□□□□□ -0.58
SCAMP1-202ENST00000506858 ZNF330Q9Y3S2 320 aaPredicted RBP11.43□□□□□ -0.58
SCAMP1-202ENST00000506858 PSDA5PKW4 1024 aaPredicted RBP11.42□□□□□ -0.58
SCAMP1-202ENST00000506858 NBPF26B4DH59 902 aa11.42□□□□□ -0.58
SCAMP1-202ENST00000506858 VAMP4O75379 141 aa11.42□□□□□ -0.58
SCAMP1-202ENST00000506858 PHF14O94880 888 aa11.42□□□□□ -0.58
SCAMP1-202ENST00000506858 MYL6BP14649 208 aa11.42□□□□□ -0.58
SCAMP1-202ENST00000506858 NBPF14Q5TI25 921 aa11.42□□□□□ -0.58
SCAMP1-202ENST00000506858 NBPF10Q6P3W6 841 aaKnown RBP11.42□□□□□ -0.58
SCAMP1-202ENST00000506858 NBPF15Q8N660 670 aa11.42□□□□□ -0.58
SCAMP1-202ENST00000506858 GNPATO15228 680 aa11.42□□□□□ -0.58
SCAMP1-202ENST00000506858 VSIG10Q8N0Z9 540 aa11.42□□□□□ -0.58
SCAMP1-202ENST00000506858 LY75O60449 1722 aa11.41□□□□□ -0.58
SCAMP1-202ENST00000506858 UBR2Q8IWV8 1755 aa11.41□□□□□ -0.58
SCAMP1-202ENST00000506858 STARD3NLO95772 234 aa11.41□□□□□ -0.58
SCAMP1-202ENST00000506858 HDGFL1Q5TGJ6 251 aa11.41□□□□□ -0.58
SCAMP1-202ENST00000506858 ARXQ96QS3 562 aa11.41□□□□□ -0.58
SCAMP1-202ENST00000506858 BCL2L13Q9BXK5 485 aa11.41□□□□□ -0.58
SCAMP1-202ENST00000506858 CCDC87Q9NVE4 849 aa11.41□□□□□ -0.58
SCAMP1-202ENST00000506858 CHPF2Q9P2E5 772 aa11.41□□□□□ -0.58
SCAMP1-202ENST00000506858 MYH14Q7Z406 1995 aaKnown RBP11.4□□□□□ -0.58
SCAMP1-202ENST00000506858 TJP1Q07157 1748 aa11.4□□□□□ -0.58
SCAMP1-202ENST00000506858 C5P01031 1676 aa11.4□□□□□ -0.58
SCAMP1-202ENST00000506858 R3HDM1Q15032 1099 aaKnown RBP11.4□□□□□ -0.58
SCAMP1-202ENST00000506858 PDIA6Q15084 440 aa11.4□□□□□ -0.58
SCAMP1-202ENST00000506858 AK7Q96M32 723 aa11.4□□□□□ -0.58
SCAMP1-202ENST00000506858 TFCP2L1Q9NZI6 479 aa11.4□□□□□ -0.58
SCAMP1-202ENST00000506858 SLC15A2Q16348 729 aa11.39□□□□□ -0.59
SCAMP1-202ENST00000506858 G2E3Q7L622 706 aa11.39□□□□□ -0.59
SCAMP1-202ENST00000506858 SRCAPQ6ZRS2 3230 aa11.39□□□□□ -0.59
SCAMP1-202ENST00000506858 AIMP1Q12904 312 aaKnown RBP11.38□□□□□ -0.59
SCAMP1-202ENST00000506858 ZNF428Q96B54 188 aa11.38□□□□□ -0.59
SCAMP1-202ENST00000506858 TEX13AQ9BXU3 409 aaPredicted RBP11.38□□□□□ -0.59
SCAMP1-202ENST00000506858 PHAXQ9H814 394 aaKnown RBP11.38□□□□□ -0.59
SCAMP1-202ENST00000506858 STK32BQ9NY57 414 aa11.38□□□□□ -0.59
SCAMP1-202ENST00000506858 SRP68Q9UHB9 627 aaKnown RBP11.38□□□□□ -0.59
SCAMP1-202ENST00000506858 TBC1D2BQ9UPU7 963 aa11.38□□□□□ -0.59
SCAMP1-202ENST00000506858 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.38□□□□□ -0.59
SCAMP1-202ENST00000506858 TTLL7Q6ZT98 887 aa11.38□□□□□ -0.59
SCAMP1-202ENST00000506858 COL23A1Q86Y22 540 aaPredicted RBP11.38□□□□□ -0.59
SCAMP1-202ENST00000506858 CNTNAP4Q9C0A0 1308 aa11.37□□□□□ -0.59
SCAMP1-202ENST00000506858 RPS6KA4O75676 772 aa11.37□□□□□ -0.59
SCAMP1-202ENST00000506858 EIF5P55010 431 aaKnown RBP11.37□□□□□ -0.59
SCAMP1-202ENST00000506858 RC3H1Q5TC82 1133 aaKnown RBP11.37□□□□□ -0.59
SCAMP1-202ENST00000506858 SSH1Q8WYL5 1049 aa11.37□□□□□ -0.59
SCAMP1-202ENST00000506858 ARHGEF1Q92888 912 aaKnown RBP11.37□□□□□ -0.59
SCAMP1-202ENST00000506858 RTCBQ9Y3I0 505 aaKnown RBP11.37□□□□□ -0.59
SCAMP1-202ENST00000506858 C4BP0C0L5 1744 aa11.37□□□□□ -0.59
SCAMP1-202ENST00000506858 NUP188Q5SRE5 1749 aa11.37□□□□□ -0.59
SCAMP1-202ENST00000506858 TAF1LQ8IZX4 1826 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms