RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 DPEP1P16444 411 aa17.36■□□□□ 0.37
TCOF1-209ENST00000506630 RC3H1Q5TC82 1133 aaKnown RBP17.36■□□□□ 0.37
TCOF1-209ENST00000506630 C16orf71Q8IYS4 520 aaPredicted RBP17.36■□□□□ 0.37
TCOF1-209ENST00000506630 DNAJC5GQ8N7S2 189 aa17.36■□□□□ 0.37
TCOF1-209ENST00000506630 IL17REQ8NFR9 667 aa17.36■□□□□ 0.37
TCOF1-209ENST00000506630 ARHGEF1Q92888 912 aaKnown RBP17.36■□□□□ 0.37
TCOF1-209ENST00000506630 PLEKHF1Q96S99 279 aa17.36■□□□□ 0.37
TCOF1-209ENST00000506630 NMRK2Q9NPI5 230 aa17.36■□□□□ 0.37
TCOF1-209ENST00000506630 SLC39A6Q13433 755 aa17.35■□□□□ 0.37
TCOF1-209ENST00000506630 CEMIPQ8WUJ3 1361 aa17.35■□□□□ 0.37
TCOF1-209ENST00000506630 C10orf71Q711Q0 1435 aa17.35■□□□□ 0.37
TCOF1-209ENST00000506630 KCPQ6ZWJ8 1503 aa17.35■□□□□ 0.37
TCOF1-209ENST00000506630 RPS6KA4O75676 772 aa17.34■□□□□ 0.37
TCOF1-209ENST00000506630 GYS1P13807 737 aa17.33■□□□□ 0.36
TCOF1-209ENST00000506630 NFE2L2Q16236 605 aa17.33■□□□□ 0.36
TCOF1-209ENST00000506630 C9orf131Q5VYM1 1079 aa17.33■□□□□ 0.36
TCOF1-209ENST00000506630 MCM10Q7L590 875 aa17.33■□□□□ 0.36
TCOF1-209ENST00000506630 RBM46Q8TBY0 533 aaKnown RBP17.33■□□□□ 0.36
TCOF1-209ENST00000506630 C4AP0C0L4 1744 aa17.33■□□□□ 0.36
TCOF1-209ENST00000506630 CNTNAP4Q9C0A0 1308 aa17.32■□□□□ 0.36
TCOF1-209ENST00000506630 DCTN1Q14203 1278 aa17.32■□□□□ 0.36
TCOF1-209ENST00000506630 CCDC146Q8IYE0 955 aa17.32■□□□□ 0.36
TCOF1-209ENST00000506630 TTC5Q8N0Z6 440 aa17.32■□□□□ 0.36
TCOF1-209ENST00000506630 PIM2Q9P1W9 311 aa17.32■□□□□ 0.36
TCOF1-209ENST00000506630 KDM3BQ7LBC6 1761 aa17.32■□□□□ 0.36
TCOF1-209ENST00000506630 KIF13BQ9NQT8 1826 aa17.31■□□□□ 0.36
TCOF1-209ENST00000506630 KDM2BQ8NHM5 1336 aa17.3■□□□□ 0.36
TCOF1-209ENST00000506630 HTATSF1O43719 755 aaKnown RBP17.3■□□□□ 0.36
TCOF1-209ENST00000506630 FSTL1Q12841 308 aa17.3■□□□□ 0.36
TCOF1-209ENST00000506630 BTBD11A6QL63 1104 aa17.29■□□□□ 0.36
TCOF1-209ENST00000506630 DALRD3Q5D0E6 543 aaKnown RBP17.29■□□□□ 0.36
TCOF1-209ENST00000506630 DNAJC10Q8IXB1 793 aa17.29■□□□□ 0.36
TCOF1-209ENST00000506630 ADAMTS8Q9UP79 889 aa17.29■□□□□ 0.36
TCOF1-209ENST00000506630 N4BP2Q86UW6 1770 aaPredicted RBP17.29■□□□□ 0.36
TCOF1-209ENST00000506630 KIAA1551Q9HCM1 1747 aa17.28■□□□□ 0.36
TCOF1-209ENST00000506630 KCNA3P22001 575 aa17.28■□□□□ 0.36
TCOF1-209ENST00000506630 CRKLP46109 303 aaKnown RBP17.28■□□□□ 0.36
TCOF1-209ENST00000506630 INTS5Q6P9B9 1019 aaKnown RBP17.28■□□□□ 0.36
TCOF1-209ENST00000506630 ZNF790Q6PG37 636 aa17.28■□□□□ 0.36
TCOF1-209ENST00000506630 RUNDC1Q96C34 613 aa17.28■□□□□ 0.36
TCOF1-209ENST00000506630 KLRG1Q96E93 195 aa17.28■□□□□ 0.36
TCOF1-209ENST00000506630 SRP68Q9UHB9 627 aaKnown RBP17.28■□□□□ 0.36
TCOF1-209ENST00000506630 LAMB4A4D0S4 1761 aa17.28■□□□□ 0.36
TCOF1-209ENST00000506630 CCDC184Q52MB2 194 aa17.27■□□□□ 0.36
TCOF1-209ENST00000506630 RNF181Q9P0P0 153 aa17.27■□□□□ 0.36
TCOF1-209ENST00000506630 KCNA4P22459 653 aa17.26■□□□□ 0.35
TCOF1-209ENST00000506630 TMPOP42166 694 aaKnown RBP17.26■□□□□ 0.35
TCOF1-209ENST00000506630 RIPK4P57078 832 aa17.26■□□□□ 0.35
TCOF1-209ENST00000506630 RRP7AQ9Y3A4 280 aaKnown RBP17.26■□□□□ 0.35
TCOF1-209ENST00000506630 NEUROD2Q15784 382 aa17.25■□□□□ 0.35
TCOF1-209ENST00000506630 THUMPD2Q9BTF0 503 aaKnown RBP17.25■□□□□ 0.35
TCOF1-209ENST00000506630 MRS2Q9HD23 443 aa17.25■□□□□ 0.35
TCOF1-209ENST00000506630 HEG1Q9ULI3 1381 aa17.25■□□□□ 0.35
TCOF1-209ENST00000506630 KCNQ3O43525 872 aa17.24■□□□□ 0.35
TCOF1-209ENST00000506630 HTRA3P83110 453 aa17.24■□□□□ 0.35
TCOF1-209ENST00000506630 LMOD3Q0VAK6 560 aa17.24■□□□□ 0.35
TCOF1-209ENST00000506630 FKBP8Q14318 412 aa17.24■□□□□ 0.35
TCOF1-209ENST00000506630 VSIG10Q8N0Z9 540 aa17.24■□□□□ 0.35
TCOF1-209ENST00000506630 JMYQ8N9B5 988 aa17.24■□□□□ 0.35
TCOF1-209ENST00000506630 ZNF496Q96IT1 587 aaPredicted RBP17.24■□□□□ 0.35
TCOF1-209ENST00000506630 FMNL2Q96PY5 1086 aa17.24■□□□□ 0.35
TCOF1-209ENST00000506630 RRAGCQ9HB90 399 aa17.24■□□□□ 0.35
TCOF1-209ENST00000506630 USP42Q9H9J4 1324 aaKnown RBP17.23■□□□□ 0.35
TCOF1-209ENST00000506630 CYP19A1P11511 503 aaPredicted RBP17.23■□□□□ 0.35
TCOF1-209ENST00000506630 TAF7Q15545 349 aaPredicted RBP17.23■□□□□ 0.35
TCOF1-209ENST00000506630 WDR90Q96KV7 1748 aa17.22■□□□□ 0.35
TCOF1-209ENST00000506630 CHRNA5P30532 468 aa17.22■□□□□ 0.35
TCOF1-209ENST00000506630 DDR1Q08345 913 aa17.22■□□□□ 0.35
TCOF1-209ENST00000506630 COL13A1Q5TAT6 717 aaPredicted RBP17.22■□□□□ 0.35
TCOF1-209ENST00000506630 ZPR1O75312 459 aa17.21■□□□□ 0.35
TCOF1-209ENST00000506630 SMC1BQ8NDV3 1235 aa17.21■□□□□ 0.35
TCOF1-209ENST00000506630 MIS18AQ9NYP9 233 aa17.21■□□□□ 0.35
TCOF1-209ENST00000506630 ZBTB1Q9Y2K1 713 aa17.21■□□□□ 0.35
TCOF1-209ENST00000506630 PNISRQ8TF01 805 aaKnown RBP17.2■□□□□ 0.34
TCOF1-209ENST00000506630 BRCA1P38398 1863 aaKnown RBP17.19■□□□□ 0.34
TCOF1-209ENST00000506630 POLRMTO00411 1230 aaKnown RBP17.19■□□□□ 0.34
TCOF1-209ENST00000506630 TEX13AQ9BXU3 409 aaPredicted RBP17.19■□□□□ 0.34
TCOF1-209ENST00000506630 ARFGEF1Q9Y6D6 1849 aa17.19■□□□□ 0.34
TCOF1-209ENST00000506630 SOS1Q07889 1333 aaPredicted RBP17.19■□□□□ 0.34
TCOF1-209ENST00000506630 ZC3H4Q9UPT8 1303 aaKnown RBP17.19■□□□□ 0.34
TCOF1-209ENST00000506630 STARD3NLO95772 234 aa17.18■□□□□ 0.34
TCOF1-209ENST00000506630 TM4SF1P30408 202 aa17.18■□□□□ 0.34
TCOF1-209ENST00000506630 USPL1Q5W0Q7 1092 aa17.18■□□□□ 0.34
TCOF1-209ENST00000506630 BCL2L12Q9HB09 334 aa17.18■□□□□ 0.34
TCOF1-209ENST00000506630 COL15A1P39059 1388 aa17.17■□□□□ 0.34
TCOF1-209ENST00000506630 SCN7AQ01118 1682 aa17.17■□□□□ 0.34
TCOF1-209ENST00000506630 APAF1O14727 1248 aa17.17■□□□□ 0.34
TCOF1-209ENST00000506630 CAPN15O75808 1086 aa17.17■□□□□ 0.34
TCOF1-209ENST00000506630 CANXP27824 592 aaKnown RBP17.17■□□□□ 0.34
TCOF1-209ENST00000506630 TNS4Q8IZW8 715 aa17.17■□□□□ 0.34
TCOF1-209ENST00000506630 TSPYL4Q9UJ04 414 aa17.17■□□□□ 0.34
TCOF1-209ENST00000506630 TRIM35Q9UPQ4 493 aa17.17■□□□□ 0.34
TCOF1-209ENST00000506630 BCORQ6W2J9 1755 aa17.17■□□□□ 0.34
TCOF1-209ENST00000506630 PRAMEF22A3QJZ6 481 aa17.16■□□□□ 0.34
TCOF1-209ENST00000506630 SNRPA1P09661 255 aaKnown RBP17.16■□□□□ 0.34
TCOF1-209ENST00000506630 VEGFAP15692 232 aaPredicted RBP17.16■□□□□ 0.34
TCOF1-209ENST00000506630 LMNB1P20700 586 aa17.16■□□□□ 0.34
TCOF1-209ENST00000506630 AFDNP55196 1824 aaKnown RBP17.15■□□□□ 0.34
TCOF1-209ENST00000506630 ZNF330Q9Y3S2 320 aaPredicted RBP17.15■□□□□ 0.34
TCOF1-209ENST00000506630 USP16Q9Y5T5 823 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 686.5 ms