RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 DUSP27Q5VZP5 1158 aa10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 NECTIN2Q92692 538 aa10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 SLC4A9Q96Q91 983 aa10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 TFCP2L1Q9NZI6 479 aa10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 ZNF330Q9Y3S2 320 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 USP16Q9Y5T5 823 aa10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 SIPA1L3O60292 1781 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 EXOSC9Q06265 439 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-206ENST00000505705 KRT24Q2M2I5 525 aa10.6□□□□□ -0.71
LIMCH1-206ENST00000505705 LINC00116Q8NCU8 138 aa10.6□□□□□ -0.71
LIMCH1-206ENST00000505705 ARXQ96QS3 562 aa10.6□□□□□ -0.71
LIMCH1-206ENST00000505705 CHMP4AQ9BY43 222 aa10.6□□□□□ -0.71
LIMCH1-206ENST00000505705 KCPQ6ZWJ8 1503 aa10.59□□□□□ -0.71
LIMCH1-206ENST00000505705 PHF14O94880 888 aa10.59□□□□□ -0.71
LIMCH1-206ENST00000505705 CANXP27824 592 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-206ENST00000505705 CRKLP46109 303 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-206ENST00000505705 TWISTNBQ3B726 338 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-206ENST00000505705 HDGFL1Q5TGJ6 251 aa10.59□□□□□ -0.71
LIMCH1-206ENST00000505705 C8orf58Q8NAV2 365 aa10.59□□□□□ -0.71
LIMCH1-206ENST00000505705 PAPPAQ13219 1627 aa10.58□□□□□ -0.72
LIMCH1-206ENST00000505705 KDM3BQ7LBC6 1761 aa10.58□□□□□ -0.72
LIMCH1-206ENST00000505705 GNPATO15228 680 aa10.58□□□□□ -0.72
LIMCH1-206ENST00000505705 A1BGP04217 495 aa10.58□□□□□ -0.72
LIMCH1-206ENST00000505705 HOXB7P09629 217 aa10.58□□□□□ -0.72
LIMCH1-206ENST00000505705 CYP19A1P11511 503 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-206ENST00000505705 SLC15A2Q16348 729 aa10.58□□□□□ -0.72
LIMCH1-206ENST00000505705 TSPYL6Q8N831 410 aa10.58□□□□□ -0.72
LIMCH1-206ENST00000505705 CCDC87Q9NVE4 849 aa10.58□□□□□ -0.72
LIMCH1-206ENST00000505705 RTCBQ9Y3I0 505 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-206ENST00000505705 LY75O60449 1722 aa10.58□□□□□ -0.72
LIMCH1-206ENST00000505705 RGPD3A6NKT7 1758 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-206ENST00000505705 RGPD4Q7Z3J3 1758 aa10.57□□□□□ -0.72
LIMCH1-206ENST00000505705 MYL6BP14649 208 aa10.57□□□□□ -0.72
LIMCH1-206ENST00000505705 PIP4K2AP48426 406 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-206ENST00000505705 TRAPPC3LQ5T215 181 aa10.57□□□□□ -0.72
LIMCH1-206ENST00000505705 RC3H1Q5TC82 1133 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-206ENST00000505705 CCDC30Q5VVM6 783 aa10.57□□□□□ -0.72
LIMCH1-206ENST00000505705 STK31Q9BXU1 1019 aa10.57□□□□□ -0.72
LIMCH1-206ENST00000505705 ZBTB1Q9Y2K1 713 aa10.57□□□□□ -0.72
LIMCH1-206ENST00000505705 CNTNAP4Q9C0A0 1308 aa10.57□□□□□ -0.72
LIMCH1-206ENST00000505705 RPS6KA4O75676 772 aa10.56□□□□□ -0.72
LIMCH1-206ENST00000505705 ZNF827Q17R98 1081 aa10.56□□□□□ -0.72
LIMCH1-206ENST00000505705 AKT1S1Q96B36 256 aa10.56□□□□□ -0.72
LIMCH1-206ENST00000505705 ANO8Q9HCE9 1232 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-206ENST00000505705 UBR2Q8IWV8 1755 aa10.56□□□□□ -0.72
LIMCH1-206ENST00000505705 SOS1Q07889 1333 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-206ENST00000505705 TCERG1O14776 1098 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-206ENST00000505705 VAMP4O75379 141 aa10.55□□□□□ -0.72
LIMCH1-206ENST00000505705 RFC4P35249 363 aa10.55□□□□□ -0.72
LIMCH1-206ENST00000505705 R3HDM1Q15032 1099 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-206ENST00000505705 INTS5Q6P9B9 1019 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-206ENST00000505705 TRMT2AQ8IZ69 625 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-206ENST00000505705 FLAD1Q8NFF5 587 aa10.55□□□□□ -0.72
LIMCH1-206ENST00000505705 DBF4Q9UBU7 674 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-206ENST00000505705 C5P01031 1676 aa10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 A0A087WZG4 1122 aa10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 PSDA5PKW4 1024 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 ZPR1O75312 459 aa10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 C4BP0C0L5 1744 aa10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 SSFA2P28290 1259 aa10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 IL6STP40189 918 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 AIMP1Q12904 312 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 SMIM5Q71RC9 77 aa10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 CHPF2Q9P2E5 772 aa10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 ERBB4Q15303 1308 aa10.54□□□□□ -0.72
LIMCH1-206ENST00000505705 ZNF831Q5JPB2 1677 aa10.53□□□□□ -0.72
LIMCH1-206ENST00000505705 RREB1Q92766 1687 aa10.53□□□□□ -0.72
LIMCH1-206ENST00000505705 TJP1Q07157 1748 aa10.53□□□□□ -0.72
LIMCH1-206ENST00000505705 ANXA1P04083 346 aa10.53□□□□□ -0.72
LIMCH1-206ENST00000505705 ARHGEF1Q92888 912 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-206ENST00000505705 DDX21Q9NR30 783 aaKnown RBP eCLIP10.53□□□□□ -0.72
LIMCH1-206ENST00000505705 HYPKQ9NX55 129 aa10.53□□□□□ -0.72
LIMCH1-206ENST00000505705 NUP188Q5SRE5 1749 aa10.53□□□□□ -0.72
LIMCH1-206ENST00000505705 TAF1LQ8IZX4 1826 aa10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 NBPF26B4DH59 902 aa10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 MYCNP04198 464 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 CT47B1P0C2W7 299 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 NBPF10Q6P3W6 841 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 KIF6Q6ZMV9 814 aa10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 DZIP3Q86Y13 1208 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 COL23A1Q86Y22 540 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 NBPF15Q8N660 670 aa10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 TBC1D2BQ9UPU7 963 aa10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 PNPLA7Q6ZV29 1317 aa10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 COL15A1P39059 1388 aa10.52□□□□□ -0.73
LIMCH1-206ENST00000505705 EIF5P55010 431 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-206ENST00000505705 PDIA6Q15084 440 aa10.51□□□□□ -0.73
LIMCH1-206ENST00000505705 PROSER3Q2NL68 480 aa10.51□□□□□ -0.73
LIMCH1-206ENST00000505705 USPL1Q5W0Q7 1092 aa10.51□□□□□ -0.73
LIMCH1-206ENST00000505705 COPS6Q7L5N1 327 aa10.51□□□□□ -0.73
LIMCH1-206ENST00000505705 XAGE3Q8WTP9 111 aa10.51□□□□□ -0.73
LIMCH1-206ENST00000505705 ZNF428Q96B54 188 aa10.51□□□□□ -0.73
LIMCH1-206ENST00000505705 BCL2L13Q9BXK5 485 aa10.51□□□□□ -0.73
LIMCH1-206ENST00000505705 SMC4Q9NTJ3 1288 aa10.51□□□□□ -0.73
LIMCH1-206ENST00000505705 COL5A3P25940 1745 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-206ENST00000505705 LAMB4A4D0S4 1761 aa10.5□□□□□ -0.73
LIMCH1-206ENST00000505705 DDX58O95786 925 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-206ENST00000505705 AMIGO3Q86WK7 504 aa10.5□□□□□ -0.73
LIMCH1-206ENST00000505705 PHAXQ9H814 394 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms