RNA–Protein interactions for RNA: ENST00000504044.1

NFKB1-204, Transcript of nuclear factor kappa B subunit 1, humanhuman

TSL 2

Gene NFKB1, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-204ENST00000504044 SNRPA1P09661 255 aaKnown RBP23.59■■□□□ 1.37
NFKB1-204ENST00000504044 ZBTB1Q9Y2K1 713 aa23.59■■□□□ 1.37
NFKB1-204ENST00000504044 COL15A1P39059 1388 aa23.58■■□□□ 1.37
NFKB1-204ENST00000504044 CANXP27824 592 aaKnown RBP23.58■■□□□ 1.37
NFKB1-204ENST00000504044 RIPK4P57078 832 aa23.58■■□□□ 1.37
NFKB1-204ENST00000504044 PELP1Q8IZL8 1130 aaKnown RBP23.57■■□□□ 1.36
NFKB1-204ENST00000504044 RUNDC1Q96C34 613 aa23.57■■□□□ 1.36
NFKB1-204ENST00000504044 ANP32CO43423 234 aa23.56■■□□□ 1.36
NFKB1-204ENST00000504044 NARFQ9UHQ1 456 aa23.56■■□□□ 1.36
NFKB1-204ENST00000504044 VIRMAQ69YN4 1812 aaKnown RBP23.56■■□□□ 1.36
NFKB1-204ENST00000504044 UBR2Q8IWV8 1755 aa23.55■■□□□ 1.36
NFKB1-204ENST00000504044 NLGN2Q8NFZ4 835 aa23.55■■□□□ 1.36
NFKB1-204ENST00000504044 GRIN3BO60391 1043 aa23.54■■□□□ 1.36
NFKB1-204ENST00000504044 IL6STP40189 918 aaPredicted RBP23.54■■□□□ 1.36
NFKB1-204ENST00000504044 TMPOP42166 694 aaKnown RBP23.54■■□□□ 1.36
NFKB1-204ENST00000504044 USPL1Q5W0Q7 1092 aa23.54■■□□□ 1.36
NFKB1-204ENST00000504044 SRP68Q9UHB9 627 aaKnown RBP23.54■■□□□ 1.36
NFKB1-204ENST00000504044 ZNF330Q9Y3S2 320 aaPredicted RBP23.54■■□□□ 1.36
NFKB1-204ENST00000504044 KCNQ3O43525 872 aa23.53■■□□□ 1.36
NFKB1-204ENST00000504044 SIPA1L3O60292 1781 aaPredicted RBP23.52■■□□□ 1.36
NFKB1-204ENST00000504044 YY1P25490 414 aa23.52■■□□□ 1.36
NFKB1-204ENST00000504044 EIF5P55010 431 aaKnown RBP23.52■■□□□ 1.36
NFKB1-204ENST00000504044 BABAM1Q9NWV8 329 aa23.52■■□□□ 1.36
NFKB1-204ENST00000504044 ADAMTS8Q9UP79 889 aa23.52■■□□□ 1.36
NFKB1-204ENST00000504044 CCDC146Q8IYE0 955 aa23.51■■□□□ 1.35
NFKB1-204ENST00000504044 MYH14Q7Z406 1995 aaKnown RBP23.51■■□□□ 1.35
NFKB1-204ENST00000504044 TGFB2P61812 414 aa23.5■■□□□ 1.35
NFKB1-204ENST00000504044 FKBP8Q14318 412 aa23.5■■□□□ 1.35
NFKB1-204ENST00000504044 NEUROD2Q15784 382 aa23.49■■□□□ 1.35
NFKB1-204ENST00000504044 TSPYL4Q9UJ04 414 aa23.49■■□□□ 1.35
NFKB1-204ENST00000504044 THUMPD2Q9BTF0 503 aaKnown RBP23.48■■□□□ 1.35
NFKB1-204ENST00000504044 MIS18AQ9NYP9 233 aa23.48■■□□□ 1.35
NFKB1-204ENST00000504044 USP16Q9Y5T5 823 aa23.48■■□□□ 1.35
NFKB1-204ENST00000504044 A1BGP04217 495 aa23.47■■□□□ 1.35
NFKB1-204ENST00000504044 C4AP0C0L4 1744 aa23.46■■□□□ 1.35
NFKB1-204ENST00000504044 RRP7AQ9Y3A4 280 aaKnown RBP23.46■■□□□ 1.35
NFKB1-204ENST00000504044 C10orf71Q711Q0 1435 aa23.45■■□□□ 1.34
NFKB1-204ENST00000504044 TM4SF1P30408 202 aa23.45■■□□□ 1.34
NFKB1-204ENST00000504044 EIF4A1P60842 406 aaKnown RBP23.45■■□□□ 1.34
NFKB1-204ENST00000504044 ZNF652Q9Y2D9 606 aa23.45■■□□□ 1.34
NFKB1-204ENST00000504044 POLRMTO00411 1230 aaKnown RBP23.44■■□□□ 1.34
NFKB1-204ENST00000504044 CALD1Q05682 793 aaKnown RBP23.44■■□□□ 1.34
NFKB1-204ENST00000504044 DZIP3Q86Y13 1208 aaKnown RBP23.44■■□□□ 1.34
NFKB1-204ENST00000504044 TBC1D2BQ9UPU7 963 aa23.44■■□□□ 1.34
NFKB1-204ENST00000504044 GIGYF1O75420 1035 aaPredicted RBP23.43■■□□□ 1.34
NFKB1-204ENST00000504044 NFIXQ14938 502 aa23.43■■□□□ 1.34
NFKB1-204ENST00000504044 DDR1Q08345 913 aa23.42■■□□□ 1.34
NFKB1-204ENST00000504044 PRAMEF22A3QJZ6 481 aa23.41■■□□□ 1.34
NFKB1-204ENST00000504044 RGL2O15211 777 aa23.41■■□□□ 1.34
NFKB1-204ENST00000504044 NPHP1O15259 732 aa23.41■■□□□ 1.34
NFKB1-204ENST00000504044 SERPINB2P05120 415 aa23.4■■□□□ 1.34
NFKB1-204ENST00000504044 CLEC4GQ6UXB4 293 aa23.4■■□□□ 1.34
NFKB1-204ENST00000504044 BICDL1Q6ZP65 573 aa23.4■■□□□ 1.34
NFKB1-204ENST00000504044 MRS2Q9HD23 443 aa23.4■■□□□ 1.34
NFKB1-204ENST00000504044 DLG5Q8TDM6 1919 aa23.39■■□□□ 1.34
NFKB1-204ENST00000504044 ERBB4Q15303 1308 aa23.39■■□□□ 1.34
NFKB1-204ENST00000504044 YBX3P16989 372 aaKnown RBP eCLIP23.39■■□□□ 1.33
NFKB1-204ENST00000504044 SETDB2Q96T68 719 aa23.39■■□□□ 1.33
NFKB1-204ENST00000504044 BCL2L12Q9HB09 334 aa23.39■■□□□ 1.33
NFKB1-204ENST00000504044 CAMTA2O94983 1202 aa23.38■■□□□ 1.33
NFKB1-204ENST00000504044 LAS1LQ9Y4W2 734 aaKnown RBP23.38■■□□□ 1.33
NFKB1-204ENST00000504044 CARMIL3Q8ND23 1372 aa23.38■■□□□ 1.33
NFKB1-204ENST00000504044 PXDNLA1KZ92 1463 aa23.37■■□□□ 1.33
NFKB1-204ENST00000504044 A0A0G2JLW4 131 aa23.37■■□□□ 1.33
NFKB1-204ENST00000504044 APAF1O14727 1248 aa23.37■■□□□ 1.33
NFKB1-204ENST00000504044 TRIM35Q9UPQ4 493 aa23.37■■□□□ 1.33
NFKB1-204ENST00000504044 DPEP1P16444 411 aa23.36■■□□□ 1.33
NFKB1-204ENST00000504044 PIP4K2AP48426 406 aaPredicted RBP23.36■■□□□ 1.33
NFKB1-204ENST00000504044 TBC1D9BQ66K14 1250 aa23.36■■□□□ 1.33
NFKB1-204ENST00000504044 KIF6Q6ZMV9 814 aa23.36■■□□□ 1.33
NFKB1-204ENST00000504044 PIM2Q9P1W9 311 aa23.36■■□□□ 1.33
NFKB1-204ENST00000504044 PDZRN3Q9UPQ7 1066 aa23.36■■□□□ 1.33
NFKB1-204ENST00000504044 BCS1LQ9Y276 419 aa23.36■■□□□ 1.33
NFKB1-204ENST00000504044 CHL1O00533 1208 aa23.35■■□□□ 1.33
NFKB1-204ENST00000504044 KDM3BQ7LBC6 1761 aa23.35■■□□□ 1.33
NFKB1-204ENST00000504044 NBPF26B4DH59 902 aa23.34■■□□□ 1.33
NFKB1-204ENST00000504044 NBPF10Q6P3W6 841 aaKnown RBP23.34■■□□□ 1.33
NFKB1-204ENST00000504044 NBPF15Q8N660 670 aa23.34■■□□□ 1.33
NFKB1-204ENST00000504044 CFAP44Q96MT7 982 aa23.34■■□□□ 1.33
NFKB1-204ENST00000504044 WWC3Q9ULE0 1092 aa23.34■■□□□ 1.33
NFKB1-204ENST00000504044 ST5P78524 1137 aa23.33■■□□□ 1.33
NFKB1-204ENST00000504044 CNBD1Q8NA66 436 aa23.33■■□□□ 1.33
NFKB1-204ENST00000504044 EIF2S2P20042 333 aaKnown RBP23.32■■□□□ 1.32
NFKB1-204ENST00000504044 GNAI1P63096 354 aa23.32■■□□□ 1.32
NFKB1-204ENST00000504044 DALRD3Q5D0E6 543 aaKnown RBP23.32■■□□□ 1.32
NFKB1-204ENST00000504044 SCN7AQ01118 1682 aa23.32■■□□□ 1.32
NFKB1-204ENST00000504044 ERVV-1B6SEH8 477 aa23.31■■□□□ 1.32
NFKB1-204ENST00000504044 HOXB7P09629 217 aa23.31■■□□□ 1.32
NFKB1-204ENST00000504044 MYL6BP14649 208 aa23.31■■□□□ 1.32
NFKB1-204ENST00000504044 PDE6BP35913 854 aa23.31■■□□□ 1.32
NFKB1-204ENST00000504044 NGEFQ8N5V2 710 aa23.31■■□□□ 1.32
NFKB1-204ENST00000504044 CHMP4AQ9BY43 222 aa23.31■■□□□ 1.32
NFKB1-204ENST00000504044 KIF13BQ9NQT8 1826 aa23.31■■□□□ 1.32
NFKB1-204ENST00000504044 LAMB4A4D0S4 1761 aa23.3■■□□□ 1.32
NFKB1-204ENST00000504044 H0YIN7 160 aa23.3■■□□□ 1.32
NFKB1-204ENST00000504044 NBPF5PQ86XG9 351 aaPredicted RBP23.3■■□□□ 1.32
NFKB1-204ENST00000504044 BRIP1Q9BX63 1249 aa23.3■■□□□ 1.32
NFKB1-204ENST00000504044 IFT57Q9NWB7 429 aa23.3■■□□□ 1.32
NFKB1-204ENST00000504044 NIP7Q9Y221 180 aaKnown RBP eCLIP23.29■■□□□ 1.32
NFKB1-204ENST00000504044 TPTE2Q6XPS3 522 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms