RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 VIRMAQ69YN4 1812 aaKnown RBP9.69□□□□□ -0.86
SYNE1-231ENST00000498751 ITPRIPQ8IWB1 547 aa9.69□□□□□ -0.86
SYNE1-231ENST00000498751 GCC1Q96CN9 775 aa9.69□□□□□ -0.86
SYNE1-231ENST00000498751 L3MBTL3Q96JM7 780 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-231ENST00000498751 ZNF335Q9H4Z2 1342 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-231ENST00000498751 SLAIN2Q9P270 581 aa9.69□□□□□ -0.86
SYNE1-231ENST00000498751 AHDC1Q5TGY3 1603 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-231ENST00000498751 C8orf34Q49A92 452 aa9.68□□□□□ -0.86
SYNE1-231ENST00000498751 CCDC30Q5VVM6 783 aa9.68□□□□□ -0.86
SYNE1-231ENST00000498751 EFCAB3Q8N7B9 438 aa9.68□□□□□ -0.86
SYNE1-231ENST00000498751 PLSCR2Q9NRY7 297 aa9.68□□□□□ -0.86
SYNE1-231ENST00000498751 COL22A1Q8NFW1 1626 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-231ENST00000498751 ATP10DQ9P241 1426 aa9.67□□□□□ -0.86
SYNE1-231ENST00000498751 RNMTO43148 476 aaKnown RBP9.67□□□□□ -0.86
SYNE1-231ENST00000498751 ST18O60284 1047 aa9.67□□□□□ -0.86
SYNE1-231ENST00000498751 EIF4A1P60842 406 aaKnown RBP9.67□□□□□ -0.86
SYNE1-231ENST00000498751 C3orf67Q6ZVT6 689 aa9.67□□□□□ -0.86
SYNE1-231ENST00000498751 RPAP2Q8IXW5 612 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-231ENST00000498751 RGPD5Q99666 1765 aa9.67□□□□□ -0.86
SYNE1-231ENST00000498751 LTBP4Q8N2S1 1624 aa9.67□□□□□ -0.86
SYNE1-231ENST00000498751 SCN11AQ9UI33 1791 aa9.66□□□□□ -0.86
SYNE1-231ENST00000498751 CCT4P50991 539 aaKnown RBP9.66□□□□□ -0.86
SYNE1-231ENST00000498751 XPCQ01831 940 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-231ENST00000498751 LRRC59Q96AG4 307 aaKnown RBP9.66□□□□□ -0.86
SYNE1-231ENST00000498751 PDZRN3Q9UPQ7 1066 aa9.66□□□□□ -0.86
SYNE1-231ENST00000498751 COL5A2P05997 1499 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-231ENST00000498751 WDR17Q8IZU2 1322 aa9.65□□□□□ -0.86
SYNE1-231ENST00000498751 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-231ENST00000498751 NUCB1Q02818 461 aa9.65□□□□□ -0.86
SYNE1-231ENST00000498751 KRT24Q2M2I5 525 aa9.65□□□□□ -0.86
SYNE1-231ENST00000498751 ZNF530Q6P9A1 599 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-231ENST00000498751 ZFP91Q96JP5 570 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-231ENST00000498751 STK31Q9BXU1 1019 aa9.65□□□□□ -0.86
SYNE1-231ENST00000498751 ELL2O00472 640 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-231ENST00000498751 HSP90AB1P08238 724 aaKnown RBP9.64□□□□□ -0.87
SYNE1-231ENST00000498751 C1orf141Q5JVX7 400 aa9.64□□□□□ -0.87
SYNE1-231ENST00000498751 USHBP1Q8N6Y0 703 aa9.64□□□□□ -0.87
SYNE1-231ENST00000498751 ANKRD44Q8N8A2 993 aa9.64□□□□□ -0.87
SYNE1-231ENST00000498751 LTV1Q96GA3 475 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-231ENST00000498751 SPG7Q9UQ90 795 aa9.64□□□□□ -0.87
SYNE1-231ENST00000498751 MEGF6O75095 1541 aa9.64□□□□□ -0.87
SYNE1-231ENST00000498751 KDM6AO15550 1401 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-231ENST00000498751 PHKG2P15735 406 aa9.63□□□□□ -0.87
SYNE1-231ENST00000498751 TATP17735 454 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-231ENST00000498751 ZC3H6P61129 1189 aaKnown RBP9.63□□□□□ -0.87
SYNE1-231ENST00000498751 TEFQ10587 303 aa9.63□□□□□ -0.87
SYNE1-231ENST00000498751 FLIIQ13045 1269 aa9.63□□□□□ -0.87
SYNE1-231ENST00000498751 NKX1-1Q15270 411 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-231ENST00000498751 SIRT2Q8IXJ6 389 aa9.63□□□□□ -0.87
SYNE1-231ENST00000498751 IFNL2Q8IZJ0 200 aa9.63□□□□□ -0.87
SYNE1-231ENST00000498751 RAPGEF4Q8WZA2 1011 aa9.63□□□□□ -0.87
SYNE1-231ENST00000498751 DCTPP1Q9H773 170 aa9.63□□□□□ -0.87
SYNE1-231ENST00000498751 LGR6Q9HBX8 967 aa9.63□□□□□ -0.87
SYNE1-231ENST00000498751 ANP32AP39687 249 aaKnown RBP9.62□□□□□ -0.87
SYNE1-231ENST00000498751 DCAF5Q96JK2 942 aa9.62□□□□□ -0.87
SYNE1-231ENST00000498751 IPO9Q96P70 1041 aaKnown RBP9.62□□□□□ -0.87
SYNE1-231ENST00000498751 CARD10Q9BWT7 1032 aa9.62□□□□□ -0.87
SYNE1-231ENST00000498751 BTBD11A6QL63 1104 aa9.61□□□□□ -0.87
SYNE1-231ENST00000498751 GIGYF1O75420 1035 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-231ENST00000498751 LMOD2Q6P5Q4 547 aa9.61□□□□□ -0.87
SYNE1-231ENST00000498751 CHD1LQ86WJ1 897 aa9.61□□□□□ -0.87
SYNE1-231ENST00000498751 DDX17Q92841 729 aaKnown RBP9.61□□□□□ -0.87
SYNE1-231ENST00000498751 SLC52A2Q9HAB3 445 aa9.61□□□□□ -0.87
SYNE1-231ENST00000498751 MIS18AQ9NYP9 233 aa9.61□□□□□ -0.87
SYNE1-231ENST00000498751 BOLA1Q9Y3E2 137 aa9.61□□□□□ -0.87
SYNE1-231ENST00000498751 GLI3P10071 1580 aa9.61□□□□□ -0.87
SYNE1-231ENST00000498751 PLCH1Q4KWH8 1693 aa9.61□□□□□ -0.87
SYNE1-231ENST00000498751 COL14A1Q05707 1796 aaKnown RBP9.6□□□□□ -0.87
SYNE1-231ENST00000498751 PAPPAQ13219 1627 aa9.6□□□□□ -0.87
SYNE1-231ENST00000498751 GNAI3P08754 354 aa9.6□□□□□ -0.87
SYNE1-231ENST00000498751 BMP2KLQ5H9B9 411 aa9.6□□□□□ -0.87
SYNE1-231ENST00000498751 HDGFL1Q5TGJ6 251 aa9.6□□□□□ -0.87
SYNE1-231ENST00000498751 CEP85Q6P2H3 762 aa9.6□□□□□ -0.87
SYNE1-231ENST00000498751 G2E3Q7L622 706 aa9.6□□□□□ -0.87
SYNE1-231ENST00000498751 PCDH10Q9P2E7 1040 aa9.6□□□□□ -0.87
SYNE1-231ENST00000498751 DBF4Q9UBU7 674 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-231ENST00000498751 LRP6O75581 1613 aa9.6□□□□□ -0.87
SYNE1-231ENST00000498751 ERBB4Q15303 1308 aa9.59□□□□□ -0.87
SYNE1-231ENST00000498751 DISP2A7MBM2 1401 aa9.59□□□□□ -0.87
SYNE1-231ENST00000498751 EIF5BO60841 1220 aaKnown RBP9.59□□□□□ -0.87
SYNE1-231ENST00000498751 RGS3P49796 1198 aa9.59□□□□□ -0.87
SYNE1-231ENST00000498751 DDRGK1Q96HY6 314 aa9.59□□□□□ -0.87
SYNE1-231ENST00000498751 SHANK3Q9BYB0 1731 aa9.59□□□□□ -0.87
SYNE1-231ENST00000498751 PCDH11XQ9BZA7 1347 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 PCDH11YQ9BZA8 1340 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 ROBO1Q9Y6N7 1651 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 TNS2Q63HR2 1409 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 UBR2Q8IWV8 1755 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 ERVV-2B6SEH9 535 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 SNPHO15079 494 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 CYP27B1O15528 508 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 HMMRO75330 724 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 ZNF790Q6PG37 636 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 MPRIPQ6WCQ1 1025 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 SKAP1Q86WV1 359 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 CABLES1Q8TDN4 633 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 MS4A4AQ96JQ5 239 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 OSBPL3Q9H4L5 887 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 PRDM11Q9NQV5 511 aa9.58□□□□□ -0.88
SYNE1-231ENST00000498751 DDX21Q9NR30 783 aaKnown RBP eCLIP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms