RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 EIF5P55010 431 aaKnown RBP16.94■□□□□ 0.3
PTPRF-214ENST00000496043 DDR1Q08345 913 aa16.94■□□□□ 0.3
PTPRF-214ENST00000496043 MCM10Q7L590 875 aa16.94■□□□□ 0.3
PTPRF-214ENST00000496043 PNNQ9H307 717 aaKnown RBP16.94■□□□□ 0.3
PTPRF-214ENST00000496043 BCS1LQ9Y276 419 aa16.94■□□□□ 0.3
PTPRF-214ENST00000496043 UTRNP46939 3433 aa16.94■□□□□ 0.3
PTPRF-214ENST00000496043 TJP1Q07157 1748 aa16.93■□□□□ 0.3
PTPRF-214ENST00000496043 POLRMTO00411 1230 aaKnown RBP16.93■□□□□ 0.3
PTPRF-214ENST00000496043 KCNQ3O43525 872 aa16.93■□□□□ 0.3
PTPRF-214ENST00000496043 RALBP1Q15311 655 aa16.93■□□□□ 0.3
PTPRF-214ENST00000496043 NPM2Q86SE8 214 aaKnown RBP16.93■□□□□ 0.3
PTPRF-214ENST00000496043 CICQ96RK0 1608 aaPredicted RBP16.92■□□□□ 0.3
PTPRF-214ENST00000496043 COL15A1P39059 1388 aa16.92■□□□□ 0.3
PTPRF-214ENST00000496043 DDX10Q13206 875 aaKnown RBP16.92■□□□□ 0.3
PTPRF-214ENST00000496043 NFIXQ14938 502 aa16.92■□□□□ 0.3
PTPRF-214ENST00000496043 PIM2Q9P1W9 311 aa16.92■□□□□ 0.3
PTPRF-214ENST00000496043 C10orf71Q711Q0 1435 aa16.92■□□□□ 0.3
PTPRF-214ENST00000496043 A1BGP04217 495 aa16.91■□□□□ 0.3
PTPRF-214ENST00000496043 KCNA3P22001 575 aa16.91■□□□□ 0.3
PTPRF-214ENST00000496043 IL6STP40189 918 aaPredicted RBP16.91■□□□□ 0.3
PTPRF-214ENST00000496043 DCTN1Q14203 1278 aa16.91■□□□□ 0.3
PTPRF-214ENST00000496043 TAF7Q15545 349 aaPredicted RBP16.91■□□□□ 0.3
PTPRF-214ENST00000496043 BCL2L12Q9HB09 334 aa16.91■□□□□ 0.3
PTPRF-214ENST00000496043 PXDNLA1KZ92 1463 aa16.91■□□□□ 0.3
PTPRF-214ENST00000496043 SERPINB2P05120 415 aa16.9■□□□□ 0.3
PTPRF-214ENST00000496043 SNRPA1P09661 255 aaKnown RBP16.9■□□□□ 0.3
PTPRF-214ENST00000496043 ARHGAP27Q6ZUM4 889 aa16.9■□□□□ 0.3
PTPRF-214ENST00000496043 ZNF330Q9Y3S2 320 aaPredicted RBP16.9■□□□□ 0.3
PTPRF-214ENST00000496043 USP16Q9Y5T5 823 aa16.9■□□□□ 0.3
PTPRF-214ENST00000496043 C4AP0C0L4 1744 aa16.9■□□□□ 0.3
PTPRF-214ENST00000496043 GIGYF1O75420 1035 aaPredicted RBP16.89■□□□□ 0.29
PTPRF-214ENST00000496043 C1QTNF8P60827 252 aa16.89■□□□□ 0.29
PTPRF-214ENST00000496043 PLEKHF1Q96S99 279 aa16.89■□□□□ 0.29
PTPRF-214ENST00000496043 TBC1D2BQ9UPU7 963 aa16.89■□□□□ 0.29
PTPRF-214ENST00000496043 DALRD3Q5D0E6 543 aaKnown RBP16.88■□□□□ 0.29
PTPRF-214ENST00000496043 VIRMAQ69YN4 1812 aaKnown RBP16.88■□□□□ 0.29
PTPRF-214ENST00000496043 CHRNA5P30532 468 aa16.87■□□□□ 0.29
PTPRF-214ENST00000496043 NFE2L2Q16236 605 aa16.87■□□□□ 0.29
PTPRF-214ENST00000496043 BICDL1Q6ZP65 573 aa16.87■□□□□ 0.29
PTPRF-214ENST00000496043 PNISRQ8TF01 805 aaKnown RBP16.87■□□□□ 0.29
PTPRF-214ENST00000496043 GPBP1L1Q9HC44 474 aaPredicted RBP16.86■□□□□ 0.29
PTPRF-214ENST00000496043 KIF13BQ9NQT8 1826 aa16.86■□□□□ 0.29
PTPRF-214ENST00000496043 UBR2Q8IWV8 1755 aa16.85■□□□□ 0.29
PTPRF-214ENST00000496043 TBC1D9BQ66K14 1250 aa16.85■□□□□ 0.29
PTPRF-214ENST00000496043 MIS18AQ9NYP9 233 aa16.85■□□□□ 0.29
PTPRF-214ENST00000496043 MAPK8IP3Q9UPT6 1336 aa16.85■□□□□ 0.29
PTPRF-214ENST00000496043 ATP10DQ9P241 1426 aa16.85■□□□□ 0.29
PTPRF-214ENST00000496043 PRAMEF22A3QJZ6 481 aa16.84■□□□□ 0.29
PTPRF-214ENST00000496043 DZIP3Q86Y13 1208 aaKnown RBP16.84■□□□□ 0.29
PTPRF-214ENST00000496043 SIPA1L3O60292 1781 aaPredicted RBP16.83■□□□□ 0.28
PTPRF-214ENST00000496043 CAMTA2O94983 1202 aa16.83■□□□□ 0.28
PTPRF-214ENST00000496043 N4BP2Q86UW6 1770 aaPredicted RBP16.83■□□□□ 0.28
PTPRF-214ENST00000496043 ZNF526Q8TF50 670 aaPredicted RBP16.83■□□□□ 0.28
PTPRF-214ENST00000496043 SETDB2Q96T68 719 aa16.83■□□□□ 0.28
PTPRF-214ENST00000496043 GOLGB1Q14789 3259 aaKnown RBP16.83■□□□□ 0.28
PTPRF-214ENST00000496043 H0YIN7 160 aa16.82■□□□□ 0.28
PTPRF-214ENST00000496043 PIP4K2AP48426 406 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-214ENST00000496043 C2CD5Q86YS7 1000 aa16.82■□□□□ 0.28
PTPRF-214ENST00000496043 ADCY9O60503 1353 aa16.81■□□□□ 0.28
PTPRF-214ENST00000496043 MYBBP1AQ9BQG0 1328 aaKnown RBP16.81■□□□□ 0.28
PTPRF-214ENST00000496043 CLEC4GQ6UXB4 293 aa16.81■□□□□ 0.28
PTPRF-214ENST00000496043 PDZRN3Q9UPQ7 1066 aa16.81■□□□□ 0.28
PTPRF-214ENST00000496043 KIAA1551Q9HCM1 1747 aa16.8■□□□□ 0.28
PTPRF-214ENST00000496043 PDE6BP35913 854 aa16.8■□□□□ 0.28
PTPRF-214ENST00000496043 RIPK4P57078 832 aa16.8■□□□□ 0.28
PTPRF-214ENST00000496043 TTLL6Q8N841 843 aa16.8■□□□□ 0.28
PTPRF-214ENST00000496043 BRIP1Q9BX63 1249 aa16.8■□□□□ 0.28
PTPRF-214ENST00000496043 NBPF26B4DH59 902 aa16.79■□□□□ 0.28
PTPRF-214ENST00000496043 NPHP1O15259 732 aa16.79■□□□□ 0.28
PTPRF-214ENST00000496043 EIF4A1P60842 406 aaKnown RBP16.79■□□□□ 0.28
PTPRF-214ENST00000496043 C9orf131Q5VYM1 1079 aa16.79■□□□□ 0.28
PTPRF-214ENST00000496043 NBPF10Q6P3W6 841 aaKnown RBP16.79■□□□□ 0.28
PTPRF-214ENST00000496043 NBPF15Q8N660 670 aa16.79■□□□□ 0.28
PTPRF-214ENST00000496043 THUMPD2Q9BTF0 503 aaKnown RBP16.79■□□□□ 0.28
PTPRF-214ENST00000496043 ZNF652Q9Y2D9 606 aa16.79■□□□□ 0.28
PTPRF-214ENST00000496043 CARMIL3Q8ND23 1372 aa16.78■□□□□ 0.28
PTPRF-214ENST00000496043 SENP3-EIF4A1A0A087X0R7 540 aa16.78■□□□□ 0.28
PTPRF-214ENST00000496043 PRR5LQ6MZQ0 368 aa16.78■□□□□ 0.28
PTPRF-214ENST00000496043 RGL2O15211 777 aa16.77■□□□□ 0.28
PTPRF-214ENST00000496043 TMPOP42166 694 aaKnown RBP16.77■□□□□ 0.28
PTPRF-214ENST00000496043 CCDC24Q8N4L8 307 aa16.77■□□□□ 0.28
PTPRF-214ENST00000496043 ZNF622Q969S3 477 aaKnown RBP eCLIP16.77■□□□□ 0.28
PTPRF-214ENST00000496043 ST5P78524 1137 aa16.76■□□□□ 0.27
PTPRF-214ENST00000496043 LMOD3Q0VAK6 560 aa16.76■□□□□ 0.27
PTPRF-214ENST00000496043 WDR43Q15061 677 aaKnown RBP eCLIP16.76■□□□□ 0.27
PTPRF-214ENST00000496043 CNBD1Q8NA66 436 aa16.76■□□□□ 0.27
PTPRF-214ENST00000496043 TPTE2Q6XPS3 522 aa16.75■□□□□ 0.27
PTPRF-214ENST00000496043 NBPF5PQ86XG9 351 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-214ENST00000496043 NGEFQ8N5V2 710 aa16.75■□□□□ 0.27
PTPRF-214ENST00000496043 BABAM1Q9NWV8 329 aa16.75■□□□□ 0.27
PTPRF-214ENST00000496043 RNF181Q9P0P0 153 aa16.75■□□□□ 0.27
PTPRF-214ENST00000496043 TSPYL4Q9UJ04 414 aa16.75■□□□□ 0.27
PTPRF-214ENST00000496043 RRP7AQ9Y3A4 280 aaKnown RBP16.75■□□□□ 0.27
PTPRF-214ENST00000496043 RUNDC1Q96C34 613 aa16.74■□□□□ 0.27
PTPRF-214ENST00000496043 NIP7Q9Y221 180 aaKnown RBP eCLIP16.74■□□□□ 0.27
PTPRF-214ENST00000496043 NRXN2Q9P2S2 1712 aa16.73■□□□□ 0.27
PTPRF-214ENST00000496043 AFDNP55196 1824 aaKnown RBP16.73■□□□□ 0.27
PTPRF-214ENST00000496043 KIF3CO14782 793 aa16.73■□□□□ 0.27
PTPRF-214ENST00000496043 NEUROD2Q15784 382 aa16.73■□□□□ 0.27
PTPRF-214ENST00000496043 CCDC146Q8IYE0 955 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms