RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 ZPR1O75312 459 aa44.01■■■■■ 4.64
CBX4-203ENST00000494546 TEX13AQ9BXU3 409 aaPredicted RBP44.01■■■■■ 4.64
CBX4-203ENST00000494546 FKBP8Q14318 412 aa44■■■■■ 4.63
CBX4-203ENST00000494546 PARP3Q9Y6F1 533 aa44■■■■■ 4.63
CBX4-203ENST00000494546 YBX3P16989 372 aaKnown RBP eCLIP43.99■■■■■ 4.63
CBX4-203ENST00000494546 COL15A1P39059 1388 aa43.99■■■■■ 4.63
CBX4-203ENST00000494546 NFE2L2Q16236 605 aa43.98■■■■■ 4.63
CBX4-203ENST00000494546 USPL1Q5W0Q7 1092 aa43.97■■■■■ 4.63
CBX4-203ENST00000494546 TAF7Q15545 349 aaPredicted RBP43.93■■■■■ 4.62
CBX4-203ENST00000494546 NARFQ9UHQ1 456 aa43.93■■■■■ 4.62
CBX4-203ENST00000494546 WWC3Q9ULE0 1092 aa43.93■■■■■ 4.62
CBX4-203ENST00000494546 DLG5Q8TDM6 1919 aa43.91■■■■■ 4.62
CBX4-203ENST00000494546 GRIN3BO60391 1043 aa43.91■■■■■ 4.62
CBX4-203ENST00000494546 PRKRIP1Q9H875 184 aaPredicted RBP43.91■■■■■ 4.62
CBX4-203ENST00000494546 UTRNP46939 3433 aa43.91■■■■■ 4.62
CBX4-203ENST00000494546 ZNF330Q9Y3S2 320 aaPredicted RBP43.9■■■■■ 4.62
CBX4-203ENST00000494546 EIF5P55010 431 aaKnown RBP43.89■■■■■ 4.62
CBX4-203ENST00000494546 DDR1Q08345 913 aa43.89■■■■■ 4.62
CBX4-203ENST00000494546 MIS18AQ9NYP9 233 aa43.89■■■■■ 4.62
CBX4-203ENST00000494546 C10orf71Q711Q0 1435 aa43.89■■■■■ 4.62
CBX4-203ENST00000494546 A1BGP04217 495 aa43.87■■■■■ 4.61
CBX4-203ENST00000494546 THUMPD2Q9BTF0 503 aaKnown RBP43.87■■■■■ 4.61
CBX4-203ENST00000494546 CHD4Q14839 1912 aa43.86■■■■■ 4.61
CBX4-203ENST00000494546 USP16Q9Y5T5 823 aa43.86■■■■■ 4.61
CBX4-203ENST00000494546 A0A087WZG4 1122 aa43.85■■■■■ 4.61
CBX4-203ENST00000494546 PRAMEF22A3QJZ6 481 aa43.85■■■■■ 4.61
CBX4-203ENST00000494546 SNRPA1P09661 255 aaKnown RBP43.85■■■■■ 4.61
CBX4-203ENST00000494546 TM4SF1P30408 202 aa43.84■■■■■ 4.61
CBX4-203ENST00000494546 WDR43Q15061 677 aaKnown RBP eCLIP43.84■■■■■ 4.611e-5■■□□□ 14.2
CBX4-203ENST00000494546 IL6STP40189 918 aaPredicted RBP43.83■■■■■ 4.61
CBX4-203ENST00000494546 TGFB2P61812 414 aa43.83■■■■■ 4.61
CBX4-203ENST00000494546 BCL2L12Q9HB09 334 aa43.83■■■■■ 4.61
CBX4-203ENST00000494546 PXDNLA1KZ92 1463 aa43.83■■■■■ 4.61
CBX4-203ENST00000494546 KIF13BQ9NQT8 1826 aa43.83■■■■■ 4.61
CBX4-203ENST00000494546 POLRMTO00411 1230 aaKnown RBP43.82■■■■■ 4.61
CBX4-203ENST00000494546 PNISRQ8TF01 805 aaKnown RBP43.82■■■■■ 4.61
CBX4-203ENST00000494546 GOLGB1Q14789 3259 aaKnown RBP43.82■■■■■ 4.6
CBX4-203ENST00000494546 NPM2Q86SE8 214 aaKnown RBP43.81■■■■■ 4.6
CBX4-203ENST00000494546 CCDC146Q8IYE0 955 aa43.81■■■■■ 4.6
CBX4-203ENST00000494546 A0A0G2JLW4 131 aa43.8■■■■■ 4.6
CBX4-203ENST00000494546 RIPK4P57078 832 aa43.8■■■■■ 4.6
CBX4-203ENST00000494546 NFIXQ14938 502 aa43.8■■■■■ 4.6
CBX4-203ENST00000494546 TBC1D2BQ9UPU7 963 aa43.78■■■■■ 4.6
CBX4-203ENST00000494546 PIP4K2AP48426 406 aaPredicted RBP43.77■■■■■ 4.6
CBX4-203ENST00000494546 DPEP1P16444 411 aa43.76■■■■■ 4.6
CBX4-203ENST00000494546 N4BP2Q86UW6 1770 aaPredicted RBP43.75■■■■■ 4.59
CBX4-203ENST00000494546 TMPOP42166 694 aaKnown RBP43.75■■■■■ 4.59
CBX4-203ENST00000494546 KIAA1551Q9HCM1 1747 aa43.74■■■■■ 4.59
CBX4-203ENST00000494546 BICDL1Q6ZP65 573 aa43.73■■■■■ 4.59
CBX4-203ENST00000494546 ADAMTS8Q9UP79 889 aa43.73■■■■■ 4.59
CBX4-203ENST00000494546 RRP7AQ9Y3A4 280 aaKnown RBP43.73■■■■■ 4.59
CBX4-203ENST00000494546 ZNF784Q8NCA9 323 aaPredicted RBP43.72■■■■■ 4.59
CBX4-203ENST00000494546 RUNDC1Q96C34 613 aa43.71■■■■■ 4.59
CBX4-203ENST00000494546 LMOD3Q0VAK6 560 aa43.7■■■■■ 4.59
CBX4-203ENST00000494546 NEUROD2Q15784 382 aa43.7■■■■■ 4.59
CBX4-203ENST00000494546 KDM3BQ7LBC6 1761 aa43.69■■■■■ 4.59
CBX4-203ENST00000494546 ZNF316A6NFI3 1004 aaPredicted RBP43.69■■■■■ 4.58
CBX4-203ENST00000494546 SERPINB2P05120 415 aa43.69■■■■■ 4.58
CBX4-203ENST00000494546 BCS1LQ9Y276 419 aa43.69■■■■■ 4.58
CBX4-203ENST00000494546 EIF4A1P60842 406 aaKnown RBP43.68■■■■■ 4.58
CBX4-203ENST00000494546 DZIP3Q86Y13 1208 aaKnown RBP43.68■■■■■ 4.58
CBX4-203ENST00000494546 TBC1D9BQ66K14 1250 aa43.67■■■■■ 4.58
CBX4-203ENST00000494546 SCN7AQ01118 1682 aa43.65■■■■■ 4.58
CBX4-203ENST00000494546 CAMTA2O94983 1202 aa43.65■■■■■ 4.58
CBX4-203ENST00000494546 TSPYL4Q9UJ04 414 aa43.65■■■■■ 4.58
CBX4-203ENST00000494546 NBPF26B4DH59 902 aa43.64■■■■■ 4.58
CBX4-203ENST00000494546 GIGYF1O75420 1035 aaPredicted RBP43.64■■■■■ 4.58
CBX4-203ENST00000494546 NBPF10Q6P3W6 841 aaKnown RBP43.64■■■■■ 4.58
CBX4-203ENST00000494546 NBPF15Q8N660 670 aa43.64■■■■■ 4.58
CBX4-203ENST00000494546 KCNA3P22001 575 aa43.63■■■■■ 4.57
CBX4-203ENST00000494546 CHRNA5P30532 468 aa43.62■■■■■ 4.57
CBX4-203ENST00000494546 AFDNP55196 1824 aaKnown RBP43.62■■■■■ 4.57
CBX4-203ENST00000494546 PIM2Q9P1W9 311 aa43.6■■■■■ 4.57
CBX4-203ENST00000494546 LAMB4A4D0S4 1761 aa43.59■■■■■ 4.57
CBX4-203ENST00000494546 NRXN2Q9P2S2 1712 aa43.59■■■■■ 4.57
CBX4-203ENST00000494546 SETDB2Q96T68 719 aa43.56■■■■■ 4.56
CBX4-203ENST00000494546 CARMIL3Q8ND23 1372 aa43.55■■■■■ 4.56
CBX4-203ENST00000494546 BABAM1Q9NWV8 329 aa43.54■■■■■ 4.56
CBX4-203ENST00000494546 TRIM35Q9UPQ4 493 aa43.54■■■■■ 4.56
CBX4-203ENST00000494546 BCORQ6W2J9 1755 aa43.54■■■■■ 4.56
CBX4-203ENST00000494546 BRCA1P38398 1863 aaKnown RBP43.53■■■■■ 4.56
CBX4-203ENST00000494546 DALRD3Q5D0E6 543 aaKnown RBP43.53■■■■■ 4.56
CBX4-203ENST00000494546 ZNF652Q9Y2D9 606 aa43.52■■■■■ 4.56
CBX4-203ENST00000494546 ARHGAP27Q6ZUM4 889 aa43.51■■■■■ 4.56
CBX4-203ENST00000494546 NGEFQ8N5V2 710 aa43.51■■■■■ 4.56
CBX4-203ENST00000494546 NPHP1O15259 732 aa43.49■■■■■ 4.55
CBX4-203ENST00000494546 CLEC4GQ6UXB4 293 aa43.49■■■■■ 4.55
CBX4-203ENST00000494546 CCDC24Q8N4L8 307 aa43.49■■■■■ 4.55
CBX4-203ENST00000494546 LAS1LQ9Y4W2 734 aaKnown RBP43.49■■■■■ 4.55
CBX4-203ENST00000494546 PRR5LQ6MZQ0 368 aa43.48■■■■■ 4.55
CBX4-203ENST00000494546 CCDC184Q52MB2 194 aa43.47■■■■■ 4.55
CBX4-203ENST00000494546 C2CD5Q86YS7 1000 aa43.47■■■■■ 4.55
CBX4-203ENST00000494546 MYL6BP14649 208 aa43.46■■■■■ 4.55
CBX4-203ENST00000494546 CNBD1Q8NA66 436 aa43.45■■■■■ 4.55
CBX4-203ENST00000494546 APAF1O14727 1248 aa43.44■■■■■ 4.54
CBX4-203ENST00000494546 H0YIN7 160 aa43.43■■■■■ 4.54
CBX4-203ENST00000494546 EIF2S2P20042 333 aaKnown RBP43.43■■■■■ 4.54
CBX4-203ENST00000494546 ATP10DQ9P241 1426 aa43.42■■■■■ 4.54
CBX4-203ENST00000494546 CHL1O00533 1208 aa43.42■■■■■ 4.54
CBX4-203ENST00000494546 BRIP1Q9BX63 1249 aa43.42■■■■■ 4.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms