RNA–Protein interactions for RNA: ENST00000494069.1

LRCH3-219, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 783 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-219ENST00000494069 NUDCQ9Y266 331 aa11.44□□□□□ -0.58
LRCH3-219ENST00000494069 VIRMAQ69YN4 1812 aaKnown RBP11.44□□□□□ -0.58
LRCH3-219ENST00000494069 FKBP8Q14318 412 aa11.43□□□□□ -0.58
LRCH3-219ENST00000494069 ZNF496Q96IT1 587 aaPredicted RBP11.43□□□□□ -0.58
LRCH3-219ENST00000494069 ZBTB1Q9Y2K1 713 aa11.43□□□□□ -0.58
LRCH3-219ENST00000494069 SOS1Q07889 1333 aaPredicted RBP11.42□□□□□ -0.58
LRCH3-219ENST00000494069 USP42Q9H9J4 1324 aaKnown RBP11.42□□□□□ -0.58
LRCH3-219ENST00000494069 TEFQ10587 303 aa11.42□□□□□ -0.58
LRCH3-219ENST00000494069 DCTN1Q14203 1278 aa11.42□□□□□ -0.58
LRCH3-219ENST00000494069 USPL1Q5W0Q7 1092 aa11.42□□□□□ -0.58
LRCH3-219ENST00000494069 MCM10Q7L590 875 aa11.42□□□□□ -0.58
LRCH3-219ENST00000494069 CICQ96RK0 1608 aaPredicted RBP11.42□□□□□ -0.58
LRCH3-219ENST00000494069 CEMIPQ8WUJ3 1361 aa11.41□□□□□ -0.58
LRCH3-219ENST00000494069 C4AP0C0L4 1744 aa11.41□□□□□ -0.58
LRCH3-219ENST00000494069 A0A0G2JLW4 131 aa11.41□□□□□ -0.58
LRCH3-219ENST00000494069 GRIN3BO60391 1043 aa11.41□□□□□ -0.58
LRCH3-219ENST00000494069 FCHSD2O94868 740 aa11.41□□□□□ -0.58
LRCH3-219ENST00000494069 CANXP27824 592 aaKnown RBP11.41□□□□□ -0.58
LRCH3-219ENST00000494069 DDR1Q08345 913 aa11.41□□□□□ -0.58
LRCH3-219ENST00000494069 DDX10Q13206 875 aaKnown RBP11.41□□□□□ -0.58
LRCH3-219ENST00000494069 ZNF790Q6PG37 636 aa11.41□□□□□ -0.58
LRCH3-219ENST00000494069 CHD4Q14839 1912 aa11.41□□□□□ -0.58
LRCH3-219ENST00000494069 TTC5Q8N0Z6 440 aa11.4□□□□□ -0.58
LRCH3-219ENST00000494069 VSIG10Q8N0Z9 540 aa11.4□□□□□ -0.58
LRCH3-219ENST00000494069 BCL2L12Q9HB09 334 aa11.4□□□□□ -0.58
LRCH3-219ENST00000494069 PARP3Q9Y6F1 533 aa11.4□□□□□ -0.58
LRCH3-219ENST00000494069 PXDNLA1KZ92 1463 aa11.39□□□□□ -0.59
LRCH3-219ENST00000494069 PRAMEF22A3QJZ6 481 aa11.39□□□□□ -0.59
LRCH3-219ENST00000494069 BTBD11A6QL63 1104 aa11.39□□□□□ -0.59
LRCH3-219ENST00000494069 DPEP1P16444 411 aa11.39□□□□□ -0.59
LRCH3-219ENST00000494069 TM4SF1P30408 202 aa11.39□□□□□ -0.59
LRCH3-219ENST00000494069 C10orf71Q711Q0 1435 aa11.39□□□□□ -0.59
LRCH3-219ENST00000494069 HEG1Q9ULI3 1381 aa11.39□□□□□ -0.59
LRCH3-219ENST00000494069 SIPA1L3O60292 1781 aaPredicted RBP11.39□□□□□ -0.59
LRCH3-219ENST00000494069 UBR2Q8IWV8 1755 aa11.39□□□□□ -0.59
LRCH3-219ENST00000494069 POLRMTO00411 1230 aaKnown RBP11.38□□□□□ -0.59
LRCH3-219ENST00000494069 ZPR1O75312 459 aa11.38□□□□□ -0.59
LRCH3-219ENST00000494069 A1BGP04217 495 aa11.38□□□□□ -0.59
LRCH3-219ENST00000494069 PLEKHF1Q96S99 279 aa11.38□□□□□ -0.59
LRCH3-219ENST00000494069 COL15A1P39059 1388 aa11.38□□□□□ -0.59
LRCH3-219ENST00000494069 KIAA1551Q9HCM1 1747 aa11.38□□□□□ -0.59
LRCH3-219ENST00000494069 N4BP2Q86UW6 1770 aaPredicted RBP11.37□□□□□ -0.59
LRCH3-219ENST00000494069 STARD3NLO95772 234 aa11.37□□□□□ -0.59
LRCH3-219ENST00000494069 KCNA3P22001 575 aa11.37□□□□□ -0.59
LRCH3-219ENST00000494069 PIP4K2AP48426 406 aaPredicted RBP11.37□□□□□ -0.59
LRCH3-219ENST00000494069 EIF5P55010 431 aaKnown RBP11.37□□□□□ -0.59
LRCH3-219ENST00000494069 TGFB2P61812 414 aa11.37□□□□□ -0.59
LRCH3-219ENST00000494069 NFIXQ14938 502 aa11.37□□□□□ -0.59
LRCH3-219ENST00000494069 RTF1Q92541 710 aaKnown RBP11.37□□□□□ -0.59
LRCH3-219ENST00000494069 FMNL2Q96PY5 1086 aa11.37□□□□□ -0.59
LRCH3-219ENST00000494069 MIS18AQ9NYP9 233 aa11.37□□□□□ -0.59
LRCH3-219ENST00000494069 NARFQ9UHQ1 456 aa11.37□□□□□ -0.59
LRCH3-219ENST00000494069 USP16Q9Y5T5 823 aa11.37□□□□□ -0.59
LRCH3-219ENST00000494069 THUMPD2Q9BTF0 503 aaKnown RBP11.36□□□□□ -0.59
LRCH3-219ENST00000494069 BCS1LQ9Y276 419 aa11.36□□□□□ -0.59
LRCH3-219ENST00000494069 ZNF330Q9Y3S2 320 aaPredicted RBP11.36□□□□□ -0.59
LRCH3-219ENST00000494069 KIF13BQ9NQT8 1826 aa11.36□□□□□ -0.59
LRCH3-219ENST00000494069 CHRNA5P30532 468 aa11.35□□□□□ -0.59
LRCH3-219ENST00000494069 BICDL1Q6ZP65 573 aa11.35□□□□□ -0.59
LRCH3-219ENST00000494069 TBC1D2BQ9UPU7 963 aa11.35□□□□□ -0.59
LRCH3-219ENST00000494069 HTATSF1O43719 755 aaKnown RBP11.34□□□□□ -0.59
LRCH3-219ENST00000494069 RALBP1Q15311 655 aa11.34□□□□□ -0.59
LRCH3-219ENST00000494069 TEX13AQ9BXU3 409 aaPredicted RBP11.34□□□□□ -0.59
LRCH3-219ENST00000494069 SERPINB2P05120 415 aa11.33□□□□□ -0.6
LRCH3-219ENST00000494069 TAF7Q15545 349 aaPredicted RBP11.33□□□□□ -0.6
LRCH3-219ENST00000494069 NFE2L2Q16236 605 aa11.33□□□□□ -0.6
LRCH3-219ENST00000494069 TBC1D9BQ66K14 1250 aa11.33□□□□□ -0.6
LRCH3-219ENST00000494069 CCDC24Q8N4L8 307 aa11.33□□□□□ -0.6
LRCH3-219ENST00000494069 ZNF526Q8TF50 670 aaPredicted RBP11.33□□□□□ -0.6
LRCH3-219ENST00000494069 ATP10DQ9P241 1426 aa11.33□□□□□ -0.6
LRCH3-219ENST00000494069 CARMIL3Q8ND23 1372 aa11.32□□□□□ -0.6
LRCH3-219ENST00000494069 A0A087WZG4 1122 aa11.32□□□□□ -0.6
LRCH3-219ENST00000494069 NBPF26B4DH59 902 aa11.32□□□□□ -0.6
LRCH3-219ENST00000494069 CAMTA2O94983 1202 aa11.32□□□□□ -0.6
LRCH3-219ENST00000494069 SNRPA1P09661 255 aaKnown RBP11.32□□□□□ -0.6
LRCH3-219ENST00000494069 IL6STP40189 918 aaPredicted RBP11.32□□□□□ -0.6
LRCH3-219ENST00000494069 NBPF10Q6P3W6 841 aaKnown RBP11.32□□□□□ -0.6
LRCH3-219ENST00000494069 ARHGAP27Q6ZUM4 889 aa11.32□□□□□ -0.6
LRCH3-219ENST00000494069 NBPF15Q8N660 670 aa11.32□□□□□ -0.6
LRCH3-219ENST00000494069 ADCY9O60503 1353 aa11.31□□□□□ -0.6
LRCH3-219ENST00000494069 NEFMP07197 916 aa11.31□□□□□ -0.6
LRCH3-219ENST00000494069 PIM2Q9P1W9 311 aa11.31□□□□□ -0.6
LRCH3-219ENST00000494069 AFDNP55196 1824 aaKnown RBP11.3□□□□□ -0.6
LRCH3-219ENST00000494069 C1QTNF8P60827 252 aa11.3□□□□□ -0.6
LRCH3-219ENST00000494069 DZIP3Q86Y13 1208 aaKnown RBP11.3□□□□□ -0.6
LRCH3-219ENST00000494069 CCDC146Q8IYE0 955 aa11.3□□□□□ -0.6
LRCH3-219ENST00000494069 DLG5Q8TDM6 1919 aa11.3□□□□□ -0.6
LRCH3-219ENST00000494069 MYBBP1AQ9BQG0 1328 aaKnown RBP11.3□□□□□ -0.6
LRCH3-219ENST00000494069 MAPK8IP3Q9UPT6 1336 aa11.3□□□□□ -0.6
LRCH3-219ENST00000494069 BRCA1P38398 1863 aaKnown RBP11.29□□□□□ -0.6
LRCH3-219ENST00000494069 GIGYF1O75420 1035 aaPredicted RBP11.29□□□□□ -0.6
LRCH3-219ENST00000494069 DALRD3Q5D0E6 543 aaKnown RBP11.29□□□□□ -0.6
LRCH3-219ENST00000494069 REM2Q8IYK8 340 aaPredicted RBP11.29□□□□□ -0.6
LRCH3-219ENST00000494069 RRP7AQ9Y3A4 280 aaKnown RBP11.29□□□□□ -0.6
LRCH3-219ENST00000494069 NRXN2Q9P2S2 1712 aa11.29□□□□□ -0.6
LRCH3-219ENST00000494069 TMPOP42166 694 aaKnown RBP11.28□□□□□ -0.6
LRCH3-219ENST00000494069 RIPK4P57078 832 aa11.28□□□□□ -0.6
LRCH3-219ENST00000494069 EIF4A1P60842 406 aaKnown RBP11.28□□□□□ -0.6
LRCH3-219ENST00000494069 PRR5LQ6MZQ0 368 aa11.28□□□□□ -0.6
LRCH3-219ENST00000494069 POTEHQ6S545 545 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms