RNA–Protein interactions for RNA: ENST00000493916.1

SNIP1-203, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 4

Gene SNIP1, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-203ENST00000493916 COL15A1P39059 1388 aa29.88■■■□□ 2.37
SNIP1-203ENST00000493916 MMP10P09238 476 aa29.87■■■□□ 2.37
SNIP1-203ENST00000493916 KDM3BQ7LBC6 1761 aa29.86■■■□□ 2.37
SNIP1-203ENST00000493916 NLGN2Q8NFZ4 835 aa29.86■■■□□ 2.37
SNIP1-203ENST00000493916 PNISRQ8TF01 805 aaKnown RBP29.85■■■□□ 2.37
SNIP1-203ENST00000493916 RUNDC1Q96C34 613 aa29.85■■■□□ 2.37
SNIP1-203ENST00000493916 SRP68Q9UHB9 627 aaKnown RBP29.85■■■□□ 2.37
SNIP1-203ENST00000493916 ADAMTS8Q9UP79 889 aa29.85■■■□□ 2.37
SNIP1-203ENST00000493916 TMPOP42166 694 aaKnown RBP29.84■■■□□ 2.37
SNIP1-203ENST00000493916 RIPK4P57078 832 aa29.84■■■□□ 2.37
SNIP1-203ENST00000493916 LMOD3Q0VAK6 560 aa29.83■■■□□ 2.37
SNIP1-203ENST00000493916 CCDC146Q8IYE0 955 aa29.83■■■□□ 2.37
SNIP1-203ENST00000493916 THUMPD2Q9BTF0 503 aaKnown RBP29.83■■■□□ 2.37
SNIP1-203ENST00000493916 CANXP27824 592 aaKnown RBP29.82■■■□□ 2.36
SNIP1-203ENST00000493916 ZPR1O75312 459 aa29.81■■■□□ 2.36
SNIP1-203ENST00000493916 SNRPA1P09661 255 aaKnown RBP29.81■■■□□ 2.36
SNIP1-203ENST00000493916 EIF5P55010 431 aaKnown RBP29.81■■■□□ 2.36
SNIP1-203ENST00000493916 NARFQ9UHQ1 456 aa29.81■■■□□ 2.36
SNIP1-203ENST00000493916 FKBP8Q14318 412 aa29.79■■■□□ 2.36
SNIP1-203ENST00000493916 USPL1Q5W0Q7 1092 aa29.79■■■□□ 2.36
SNIP1-203ENST00000493916 MIS18AQ9NYP9 233 aa29.79■■■□□ 2.36
SNIP1-203ENST00000493916 KIF13BQ9NQT8 1826 aa29.78■■■□□ 2.36
SNIP1-203ENST00000493916 A0A087WZG4 1122 aa29.78■■■□□ 2.36
SNIP1-203ENST00000493916 IL6STP40189 918 aaPredicted RBP29.78■■■□□ 2.36
SNIP1-203ENST00000493916 C10orf71Q711Q0 1435 aa29.78■■■□□ 2.36
SNIP1-203ENST00000493916 LAMB4A4D0S4 1761 aa29.77■■■□□ 2.36
SNIP1-203ENST00000493916 PRAMEF22A3QJZ6 481 aa29.77■■■□□ 2.36
SNIP1-203ENST00000493916 USP16Q9Y5T5 823 aa29.77■■■□□ 2.36
SNIP1-203ENST00000493916 PARP3Q9Y6F1 533 aa29.77■■■□□ 2.36
SNIP1-203ENST00000493916 SCN7AQ01118 1682 aa29.76■■■□□ 2.36
SNIP1-203ENST00000493916 A1BGP04217 495 aa29.76■■■□□ 2.35
SNIP1-203ENST00000493916 RRP7AQ9Y3A4 280 aaKnown RBP29.76■■■□□ 2.35
SNIP1-203ENST00000493916 ANP32CO43423 234 aa29.75■■■□□ 2.35
SNIP1-203ENST00000493916 UTRNP46939 3433 aa29.75■■■□□ 2.35
SNIP1-203ENST00000493916 GOLGB1Q14789 3259 aaKnown RBP29.75■■■□□ 2.35
SNIP1-203ENST00000493916 BABAM1Q9NWV8 329 aa29.74■■■□□ 2.35
SNIP1-203ENST00000493916 TM4SF1P30408 202 aa29.73■■■□□ 2.35
SNIP1-203ENST00000493916 EIF4A1P60842 406 aaKnown RBP29.73■■■□□ 2.35
SNIP1-203ENST00000493916 DDR1Q08345 913 aa29.73■■■□□ 2.35
SNIP1-203ENST00000493916 GPR162Q16538 588 aa29.73■■■□□ 2.35
SNIP1-203ENST00000493916 BCL2L12Q9HB09 334 aa29.72■■■□□ 2.35
SNIP1-203ENST00000493916 TRIM35Q9UPQ4 493 aa29.72■■■□□ 2.35
SNIP1-203ENST00000493916 NEUROD2Q15784 382 aa29.71■■■□□ 2.35
SNIP1-203ENST00000493916 CCDC184Q52MB2 194 aa29.71■■■□□ 2.35
SNIP1-203ENST00000493916 TSPYL4Q9UJ04 414 aa29.71■■■□□ 2.35
SNIP1-203ENST00000493916 KIAA1551Q9HCM1 1747 aa29.71■■■□□ 2.35
SNIP1-203ENST00000493916 POLRMTO00411 1230 aaKnown RBP29.7■■■□□ 2.35
SNIP1-203ENST00000493916 GIGYF1O75420 1035 aaPredicted RBP29.7■■■□□ 2.35
SNIP1-203ENST00000493916 PXDNLA1KZ92 1463 aa29.69■■■□□ 2.34
SNIP1-203ENST00000493916 ZNF330Q9Y3S2 320 aaPredicted RBP29.69■■■□□ 2.34
SNIP1-203ENST00000493916 BCORQ6W2J9 1755 aa29.68■■■□□ 2.34
SNIP1-203ENST00000493916 NFIXQ14938 502 aa29.68■■■□□ 2.34
SNIP1-203ENST00000493916 NPM2Q86SE8 214 aaKnown RBP29.68■■■□□ 2.34
SNIP1-203ENST00000493916 PELP1Q8IZL8 1130 aaKnown RBP29.68■■■□□ 2.34
SNIP1-203ENST00000493916 TGFB2P61812 414 aa29.67■■■□□ 2.34
SNIP1-203ENST00000493916 NRXN2Q9P2S2 1712 aa29.67■■■□□ 2.34
SNIP1-203ENST00000493916 YBX3P16989 372 aaKnown RBP eCLIP29.66■■■□□ 2.34
SNIP1-203ENST00000493916 TBC1D2BQ9UPU7 963 aa29.66■■■□□ 2.34
SNIP1-203ENST00000493916 NBPF26B4DH59 902 aa29.65■■■□□ 2.34
SNIP1-203ENST00000493916 CAMTA2O94983 1202 aa29.65■■■□□ 2.34
SNIP1-203ENST00000493916 PIP4K2AP48426 406 aaPredicted RBP29.65■■■□□ 2.34
SNIP1-203ENST00000493916 NBPF10Q6P3W6 841 aaKnown RBP29.65■■■□□ 2.34
SNIP1-203ENST00000493916 NBPF15Q8N660 670 aa29.65■■■□□ 2.34
SNIP1-203ENST00000493916 APAF1O14727 1248 aa29.63■■■□□ 2.33
SNIP1-203ENST00000493916 GRIN3BO60391 1043 aa29.63■■■□□ 2.33
SNIP1-203ENST00000493916 YY1P25490 414 aa29.63■■■□□ 2.33
SNIP1-203ENST00000493916 DZIP3Q86Y13 1208 aaKnown RBP29.63■■■□□ 2.33
SNIP1-203ENST00000493916 CHL1O00533 1208 aa29.62■■■□□ 2.33
SNIP1-203ENST00000493916 MRS2Q9HD23 443 aa29.62■■■□□ 2.33
SNIP1-203ENST00000493916 AFDNP55196 1824 aaKnown RBP29.61■■■□□ 2.33
SNIP1-203ENST00000493916 N4BP2Q86UW6 1770 aaPredicted RBP29.61■■■□□ 2.33
SNIP1-203ENST00000493916 TBC1D9BQ66K14 1250 aa29.6■■■□□ 2.33
SNIP1-203ENST00000493916 RGL2O15211 777 aa29.59■■■□□ 2.33
SNIP1-203ENST00000493916 ERBB4Q15303 1308 aa29.59■■■□□ 2.33
SNIP1-203ENST00000493916 CHD4Q14839 1912 aa29.59■■■□□ 2.33
SNIP1-203ENST00000493916 SERPINB2P05120 415 aa29.58■■■□□ 2.33
SNIP1-203ENST00000493916 CARMIL3Q8ND23 1372 aa29.58■■■□□ 2.33
SNIP1-203ENST00000493916 A0A0G2JLW4 131 aa29.57■■■□□ 2.32
SNIP1-203ENST00000493916 DPEP1P16444 411 aa29.57■■■□□ 2.32
SNIP1-203ENST00000493916 CLEC4GQ6UXB4 293 aa29.57■■■□□ 2.32
SNIP1-203ENST00000493916 BICDL1Q6ZP65 573 aa29.56■■■□□ 2.32
SNIP1-203ENST00000493916 CFAP44Q96MT7 982 aa29.56■■■□□ 2.32
SNIP1-203ENST00000493916 BRCA1P38398 1863 aaKnown RBP29.56■■■□□ 2.32
SNIP1-203ENST00000493916 ZNF652Q9Y2D9 606 aa29.55■■■□□ 2.32
SNIP1-203ENST00000493916 LAS1LQ9Y4W2 734 aaKnown RBP29.55■■■□□ 2.32
SNIP1-203ENST00000493916 CALD1Q05682 793 aaKnown RBP29.54■■■□□ 2.32
SNIP1-203ENST00000493916 KCNA3P22001 575 aa29.53■■■□□ 2.32
SNIP1-203ENST00000493916 SETDB2Q96T68 719 aa29.53■■■□□ 2.32
SNIP1-203ENST00000493916 ZNF853P0CG23 659 aa29.52■■■□□ 2.32
SNIP1-203ENST00000493916 WWC3Q9ULE0 1092 aa29.52■■■□□ 2.32
SNIP1-203ENST00000493916 IFT57Q9NWB7 429 aa29.51■■■□□ 2.31
SNIP1-203ENST00000493916 HOXB7P09629 217 aa29.49■■■□□ 2.31
SNIP1-203ENST00000493916 MYL6BP14649 208 aa29.49■■■□□ 2.31
SNIP1-203ENST00000493916 MBIPQ9NS73 344 aa29.49■■■□□ 2.31
SNIP1-203ENST00000493916 ERVV-1B6SEH8 477 aa29.48■■■□□ 2.31
SNIP1-203ENST00000493916 EIF2S2P20042 333 aaKnown RBP29.48■■■□□ 2.31
SNIP1-203ENST00000493916 PDIA6Q15084 440 aa29.48■■■□□ 2.31
SNIP1-203ENST00000493916 CCDC27Q2M243 656 aa29.48■■■□□ 2.31
SNIP1-203ENST00000493916 KRT24Q2M2I5 525 aa29.48■■■□□ 2.31
SNIP1-203ENST00000493916 NCBP3Q53F19 620 aaKnown RBP29.48■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms