RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 IPO8O15397 1037 aaKnown RBP16.19■□□□□ 0.18
VPS52-220ENST00000493674 RLBP1P12271 317 aa16.19■□□□□ 0.18
VPS52-220ENST00000493674 HDGFL1Q5TGJ6 251 aa16.19■□□□□ 0.18
VPS52-220ENST00000493674 FRAT1Q92837 279 aaPredicted RBP16.19■□□□□ 0.18
VPS52-220ENST00000493674 UPF1Q92900 1129 aaKnown RBP eCLIP16.19■□□□□ 0.18
VPS52-220ENST00000493674 ATG3Q9NT62 314 aa16.19■□□□□ 0.18
VPS52-220ENST00000493674 PTPRCP08575 1304 aa16.19■□□□□ 0.18
VPS52-220ENST00000493674 PRAMEF22A3QJZ6 481 aa16.18■□□□□ 0.18
VPS52-220ENST00000493674 TCERG1O14776 1098 aaKnown RBP16.18■□□□□ 0.18
VPS52-220ENST00000493674 SNRPA1P09661 255 aaKnown RBP16.18■□□□□ 0.18
VPS52-220ENST00000493674 MS4A1P11836 297 aa16.18■□□□□ 0.18
VPS52-220ENST00000493674 CCDC125Q86Z20 511 aa16.18■□□□□ 0.18
VPS52-220ENST00000493674 CRBNQ96SW2 442 aa16.18■□□□□ 0.18
VPS52-220ENST00000493674 NUP98P52948 1817 aa16.17■□□□□ 0.18
VPS52-220ENST00000493674 CANXP27824 592 aaKnown RBP16.17■□□□□ 0.18
VPS52-220ENST00000493674 PRIM1P49642 420 aaKnown RBP16.17■□□□□ 0.18
VPS52-220ENST00000493674 VSIG10Q8N0Z9 540 aa16.17■□□□□ 0.18
VPS52-220ENST00000493674 EXOC6Q8TAG9 804 aa16.17■□□□□ 0.18
VPS52-220ENST00000493674 PANK1Q8TE04 598 aa16.17■□□□□ 0.18
VPS52-220ENST00000493674 STK31Q9BXU1 1019 aa16.17■□□□□ 0.18
VPS52-220ENST00000493674 BCORQ6W2J9 1755 aa16.16■□□□□ 0.18
VPS52-220ENST00000493674 SLC4A2P04920 1241 aa16.16■□□□□ 0.18
VPS52-220ENST00000493674 G2E3Q7L622 706 aa16.16■□□□□ 0.18
VPS52-220ENST00000493674 DZIP1LQ8IYY4 767 aaKnown RBP16.16■□□□□ 0.18
VPS52-220ENST00000493674 ASAP1Q9ULH1 1129 aa16.16■□□□□ 0.18
VPS52-220ENST00000493674 ERBB4Q15303 1308 aa16.16■□□□□ 0.18
VPS52-220ENST00000493674 PDIA6Q15084 440 aa16.15■□□□□ 0.18
VPS52-220ENST00000493674 API5Q9BZZ5 524 aaKnown RBP16.15■□□□□ 0.18
VPS52-220ENST00000493674 CHPF2Q9P2E5 772 aa16.15■□□□□ 0.18
VPS52-220ENST00000493674 LRP10Q7Z4F1 713 aa16.14■□□□□ 0.17
VPS52-220ENST00000493674 DDX21Q9NR30 783 aaKnown RBP eCLIP16.14■□□□□ 0.17
VPS52-220ENST00000493674 DBF4Q9UBU7 674 aaPredicted RBP16.14■□□□□ 0.17
VPS52-220ENST00000493674 EIF2S2P20042 333 aaKnown RBP16.13■□□□□ 0.17
VPS52-220ENST00000493674 FLIIQ13045 1269 aa16.13■□□□□ 0.17
VPS52-220ENST00000493674 MVPQ14764 893 aaKnown RBP16.13■□□□□ 0.17
VPS52-220ENST00000493674 FAM196AQ6ZSG2 479 aa16.13■□□□□ 0.17
VPS52-220ENST00000493674 NECTIN2Q92692 538 aa16.13■□□□□ 0.17
VPS52-220ENST00000493674 ACSBG1Q96GR2 724 aa16.13■□□□□ 0.17
VPS52-220ENST00000493674 SLC4A9Q96Q91 983 aa16.13■□□□□ 0.17
VPS52-220ENST00000493674 PPP4R2Q9NY27 417 aa16.13■□□□□ 0.17
VPS52-220ENST00000493674 USP16Q9Y5T5 823 aa16.13■□□□□ 0.17
VPS52-220ENST00000493674 KCNQ2O43526 872 aa16.12■□□□□ 0.17
VPS52-220ENST00000493674 PROSER3Q2NL68 480 aa16.12■□□□□ 0.17
VPS52-220ENST00000493674 TMEM57Q8N5G2 664 aa16.12■□□□□ 0.17
VPS52-220ENST00000493674 CLUAP1Q96AJ1 413 aa16.12■□□□□ 0.17
VPS52-220ENST00000493674 UBR3Q6ZT12 1888 aa16.12■□□□□ 0.17
VPS52-220ENST00000493674 AAMPQ13685 434 aa16.11■□□□□ 0.17
VPS52-220ENST00000493674 INTS3Q68E01 1043 aaKnown RBP16.11■□□□□ 0.17
VPS52-220ENST00000493674 FTSJ3Q8IY81 847 aaKnown RBP16.11■□□□□ 0.17
VPS52-220ENST00000493674 SYTL4Q96C24 671 aaPredicted RBP16.11■□□□□ 0.17
VPS52-220ENST00000493674 HYPKQ9NX55 129 aa16.11■□□□□ 0.17
VPS52-220ENST00000493674 COG6Q9Y2V7 657 aa16.11■□□□□ 0.17
VPS52-220ENST00000493674 PALLDQ8WX93 1383 aa16.11■□□□□ 0.17
VPS52-220ENST00000493674 C4AP0C0L4 1744 aa16.11■□□□□ 0.17
VPS52-220ENST00000493674 C4BP0C0L5 1744 aa16.11■□□□□ 0.17
VPS52-220ENST00000493674 ATP10DQ9P241 1426 aa16.11■□□□□ 0.17
VPS52-220ENST00000493674 PTCD1O75127 700 aaKnown RBP16.1■□□□□ 0.17
VPS52-220ENST00000493674 TEX13AQ9BXU3 409 aaPredicted RBP16.1■□□□□ 0.17
VPS52-220ENST00000493674 PHAXQ9H814 394 aaKnown RBP16.1■□□□□ 0.17
VPS52-220ENST00000493674 ADCY9O60503 1353 aa16.1■□□□□ 0.17
VPS52-220ENST00000493674 IBTKQ9P2D0 1353 aaPredicted RBP16.1■□□□□ 0.17
VPS52-220ENST00000493674 SCN7AQ01118 1682 aa16.09■□□□□ 0.17
VPS52-220ENST00000493674 NBPF26B4DH59 902 aa16.09■□□□□ 0.17
VPS52-220ENST00000493674 SF3B2Q13435 895 aaKnown RBP16.09■□□□□ 0.17
VPS52-220ENST00000493674 NBPF14Q5TI25 921 aa16.09■□□□□ 0.17
VPS52-220ENST00000493674 NBPF10Q6P3W6 841 aaKnown RBP16.09■□□□□ 0.17
VPS52-220ENST00000493674 NBPF15Q8N660 670 aa16.09■□□□□ 0.17
VPS52-220ENST00000493674 SMARCC1Q92922 1105 aaPredicted RBP16.09■□□□□ 0.17
VPS52-220ENST00000493674 DDX19BQ9UMR2 479 aa16.09■□□□□ 0.17
VPS52-220ENST00000493674 TUBGCP6Q96RT7 1819 aa16.09■□□□□ 0.17
VPS52-220ENST00000493674 CASZ1Q86V15 1759 aa16.08■□□□□ 0.17
VPS52-220ENST00000493674 ANXA1P04083 346 aa16.08■□□□□ 0.16
VPS52-220ENST00000493674 PTF1AQ7RTS3 328 aa16.08■□□□□ 0.16
VPS52-220ENST00000493674 DNAJC10Q8IXB1 793 aa16.08■□□□□ 0.16
VPS52-220ENST00000493674 CYP19A1P11511 503 aaPredicted RBP16.07■□□□□ 0.16
VPS52-220ENST00000493674 FKBP5Q13451 457 aaPredicted RBP16.07■□□□□ 0.16
VPS52-220ENST00000493674 FAM182BQ5T319 152 aa16.07■□□□□ 0.16
VPS52-220ENST00000493674 MYH3P11055 1940 aa16.07■□□□□ 0.16
VPS52-220ENST00000493674 LOC102724428A0A0B4J2F2 783 aa16.06■□□□□ 0.16
VPS52-220ENST00000493674 SIK1P57059 783 aa16.06■□□□□ 0.16
VPS52-220ENST00000493674 RBM42Q9BTD8 480 aaKnown RBP16.06■□□□□ 0.16
VPS52-220ENST00000493674 F6X3S4 739 aa16.05■□□□□ 0.16
VPS52-220ENST00000493674 ITPRIPQ8IWB1 547 aa16.05■□□□□ 0.16
VPS52-220ENST00000493674 BCL11BQ9C0K0 894 aaPredicted RBP16.05■□□□□ 0.16
VPS52-220ENST00000493674 ZBTB40Q9NUA8 1239 aa16.05■□□□□ 0.16
VPS52-220ENST00000493674 ZBTB7BO15156 539 aaPredicted RBP16.04■□□□□ 0.16
VPS52-220ENST00000493674 STARD3NLO95772 234 aa16.04■□□□□ 0.16
VPS52-220ENST00000493674 A1BGP04217 495 aa16.04■□□□□ 0.16
VPS52-220ENST00000493674 BAG6P46379 1132 aa16.04■□□□□ 0.16
VPS52-220ENST00000493674 CCT4P50991 539 aaKnown RBP16.04■□□□□ 0.16
VPS52-220ENST00000493674 LAMB2P55268 1798 aa16.04■□□□□ 0.16
VPS52-220ENST00000493674 QSER1Q2KHR3 1735 aa16.03■□□□□ 0.16
VPS52-220ENST00000493674 ITPK1Q13572 414 aa16.03■□□□□ 0.16
VPS52-220ENST00000493674 KSR2Q6VAB6 950 aa16.03■□□□□ 0.16
VPS52-220ENST00000493674 DNAAF4Q8WXU2 420 aa16.03■□□□□ 0.16
VPS52-220ENST00000493674 PI4KAP2A4QPH2 592 aa16.02■□□□□ 0.16
VPS52-220ENST00000493674 MYL6BP14649 208 aa16.02■□□□□ 0.16
VPS52-220ENST00000493674 PI4KAP1Q8N8J0 262 aa16.02■□□□□ 0.16
VPS52-220ENST00000493674 XAGE3Q8WTP9 111 aa16.02■□□□□ 0.16
VPS52-220ENST00000493674 CHMP4BQ9H444 224 aaKnown RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms