RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 LRSAM1Q6UWE0 723 aa8.22□□□□□ -1.09
VPS13B-205ENST00000493587 NLRP13Q86W25 1043 aa8.22□□□□□ -1.09
VPS13B-205ENST00000493587 C16orf45Q96MC5 204 aaPredicted RBP8.22□□□□□ -1.09
VPS13B-205ENST00000493587 IFT57Q9NWB7 429 aa8.22□□□□□ -1.09
VPS13B-205ENST00000493587 SPC24Q8NBT2 197 aa8.21□□□□□ -1.09
VPS13B-205ENST00000493587 SPINK5Q9NQ38 1064 aaPredicted RBP8.21□□□□□ -1.09
VPS13B-205ENST00000493587 NKTRP30414 1462 aaKnown RBP8.21□□□□□ -1.1
VPS13B-205ENST00000493587 ZNF397Q8NF99 534 aaPredicted RBP8.21□□□□□ -1.1
VPS13B-205ENST00000493587 NSD2O96028 1365 aa8.21□□□□□ -1.1
VPS13B-205ENST00000493587 IBTKQ9P2D0 1353 aaPredicted RBP8.21□□□□□ -1.1
VPS13B-205ENST00000493587 ZSCAN26Q16670 478 aa8.2□□□□□ -1.1
VPS13B-205ENST00000493587 FBXO31Q5XUX0 539 aaPredicted RBP8.2□□□□□ -1.1
VPS13B-205ENST00000493587 POLKQ9UBT6 870 aa8.2□□□□□ -1.1
VPS13B-205ENST00000493587 COG6Q9Y2V7 657 aa8.2□□□□□ -1.1
VPS13B-205ENST00000493587 LTN1O94822 1766 aa8.2□□□□□ -1.1
VPS13B-205ENST00000493587 TTC36A6NLP5 189 aa8.2□□□□□ -1.1
VPS13B-205ENST00000493587 REC8O95072 547 aa8.2□□□□□ -1.1
VPS13B-205ENST00000493587 PPP2R1AP30153 589 aa8.2□□□□□ -1.1
VPS13B-205ENST00000493587 NBPF9Q3BBW0 867 aa8.2□□□□□ -1.1
VPS13B-205ENST00000493587 NBPF6Q5VWK0 638 aa8.2□□□□□ -1.1
VPS13B-205ENST00000493587 NBPF5PQ86XG9 351 aaPredicted RBP8.2□□□□□ -1.1
VPS13B-205ENST00000493587 NBPF4Q96M43 638 aa8.2□□□□□ -1.1
VPS13B-205ENST00000493587 ZNF692Q9BU19 519 aaPredicted RBP8.2□□□□□ -1.1
VPS13B-205ENST00000493587 ATP2B1P20020 1258 aa8.19□□□□□ -1.1
VPS13B-205ENST00000493587 MNAT1P51948 309 aa8.19□□□□□ -1.1
VPS13B-205ENST00000493587 NBPF11Q86T75 865 aa8.19□□□□□ -1.1
VPS13B-205ENST00000493587 PRPF38AQ8NAV1 312 aaKnown RBP8.19□□□□□ -1.1
VPS13B-205ENST00000493587 PDZRN3Q9UPQ7 1066 aa8.19□□□□□ -1.1
VPS13B-205ENST00000493587 ADCY5O95622 1261 aa8.19□□□□□ -1.1
VPS13B-205ENST00000493587 TPM4P67936 248 aa8.19□□□□□ -1.1
VPS13B-205ENST00000493587 SMC5Q8IY18 1101 aa8.19□□□□□ -1.1
VPS13B-205ENST00000493587 DRC7Q8IY82 874 aa8.19□□□□□ -1.1
VPS13B-205ENST00000493587 RRP15Q9Y3B9 282 aaKnown RBP8.19□□□□□ -1.1
VPS13B-205ENST00000493587 FAM208AQ9UK61 1670 aaKnown RBP8.19□□□□□ -1.1
VPS13B-205ENST00000493587 SETQ01105 290 aaPredicted RBP8.19□□□□□ -1.1
VPS13B-205ENST00000493587 BMS1Q14692 1282 aaKnown RBP8.19□□□□□ -1.1
VPS13B-205ENST00000493587 SYAP1Q96A49 352 aaPredicted RBP8.19□□□□□ -1.1
VPS13B-205ENST00000493587 LCMT1Q9UIC8 334 aa8.19□□□□□ -1.1
VPS13B-205ENST00000493587 PTPRUQ92729 1446 aa8.18□□□□□ -1.1
VPS13B-205ENST00000493587 PPP1R12AO14974 1030 aaPredicted RBP8.18□□□□□ -1.1
VPS13B-205ENST00000493587 TMF1P82094 1093 aa8.18□□□□□ -1.1
VPS13B-205ENST00000493587 CLUAP1Q96AJ1 413 aa8.18□□□□□ -1.1
VPS13B-205ENST00000493587 MED4Q9NPJ6 270 aa8.18□□□□□ -1.1
VPS13B-205ENST00000493587 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.18□□□□□ -1.1
VPS13B-205ENST00000493587 GIMAP7Q8NHV1 300 aa8.18□□□□□ -1.1
VPS13B-205ENST00000493587 DNAAF4Q8WXU2 420 aa8.18□□□□□ -1.1
VPS13B-205ENST00000493587 PRDM16Q9HAZ2 1276 aa8.18□□□□□ -1.1
VPS13B-205ENST00000493587 CTIFO43310 598 aaKnown RBP8.17□□□□□ -1.1
VPS13B-205ENST00000493587 PAIP2Q9BPZ3 127 aaKnown RBP8.17□□□□□ -1.1
VPS13B-205ENST00000493587 KDM3BQ7LBC6 1761 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 CEP170BQ9Y4F5 1589 aaPredicted RBP8.17□□□□□ -1.1
VPS13B-205ENST00000493587 NEBLO76041 1014 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 CT47B1P0C2W7 299 aaPredicted RBP8.17□□□□□ -1.1
VPS13B-205ENST00000493587 LEKR1Q6ZMV7 388 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 PMFBP1Q8TBY8 1022 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 AK7Q96M32 723 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 SLC24A3Q9HC58 644 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 ALS2Q96Q42 1657 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 MED1Q15648 1581 aaPredicted RBP8.17□□□□□ -1.1
VPS13B-205ENST00000493587 PTCH1Q13635 1447 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 PPIP5K1Q6PFW1 1433 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 RGPD2P0DJD1 1756 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 SMTNL1A8MU46 457 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 K7ELQ4 463 aaPredicted RBP8.17□□□□□ -1.1
VPS13B-205ENST00000493587 LIG1P18858 919 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 NUCB2P80303 420 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 TPD52L1Q16890 204 aaPredicted RBP8.17□□□□□ -1.1
VPS13B-205ENST00000493587 A0A1W2PP64 1363 aa8.17□□□□□ -1.1
VPS13B-205ENST00000493587 LMAN1P49257 510 aa8.16□□□□□ -1.1
VPS13B-205ENST00000493587 FOXD4L6Q3SYB3 417 aaPredicted RBP8.16□□□□□ -1.1
VPS13B-205ENST00000493587 TTC19Q6DKK2 380 aaPredicted RBP8.16□□□□□ -1.1
VPS13B-205ENST00000493587 FOXD4L3Q6VB84 417 aaPredicted RBP8.16□□□□□ -1.1
VPS13B-205ENST00000493587 IRAK4Q9NWZ3 460 aa8.16□□□□□ -1.1
VPS13B-205ENST00000493587 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.16□□□□□ -1.1
VPS13B-205ENST00000493587 KNSTRNQ9Y448 316 aa8.16□□□□□ -1.1
VPS13B-205ENST00000493587 NSD3Q9BZ95 1437 aa8.16□□□□□ -1.1
VPS13B-205ENST00000493587 MCTP2Q6DN12 878 aa8.16□□□□□ -1.1
VPS13B-205ENST00000493587 PANK1Q8TE04 598 aa8.16□□□□□ -1.1
VPS13B-205ENST00000493587 TMEM63CQ9P1W3 806 aa8.16□□□□□ -1.1
VPS13B-205ENST00000493587 CGNL1Q0VF96 1302 aa8.16□□□□□ -1.1
VPS13B-205ENST00000493587 CACNA1FO60840 1977 aa8.16□□□□□ -1.1
VPS13B-205ENST00000493587 KMT5BQ4FZB7 885 aa8.16□□□□□ -1.1
VPS13B-205ENST00000493587 RIMS2Q9UQ26 1411 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 BCAR3O75815 825 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 SRLQ86TD4 932 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 PYCARDQ9ULZ3 195 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 ZMYM3Q14202 1370 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 TPM1P09493 284 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 GOLGA2Q08379 1002 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 ELF2Q15723 593 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 DUSP27Q5VZP5 1158 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 LMBRD1Q9NUN5 540 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 SPTLC3Q9NUV7 552 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 ZNF446Q9NWS9 450 aa8.15□□□□□ -1.1
VPS13B-205ENST00000493587 CDK12Q9NYV4 1490 aaPredicted RBP8.15□□□□□ -1.11
VPS13B-205ENST00000493587 IPO8O15397 1037 aaKnown RBP8.15□□□□□ -1.11
VPS13B-205ENST00000493587 CASC1Q6TDU7 716 aa8.15□□□□□ -1.11
VPS13B-205ENST00000493587 PACS2Q86VP3 889 aa8.15□□□□□ -1.11
VPS13B-205ENST00000493587 RWDD1Q9H446 243 aaPredicted RBP8.15□□□□□ -1.11
VPS13B-205ENST00000493587 COL18A1P39060 1754 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms