RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 ZNF75DP51815 510 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 ARID5BQ14865 1188 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 MAP3K11Q16584 847 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 FAM173BQ6P4H8 233 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 LRRCC1Q9C099 1032 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 CABP1Q9NZU7 370 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 CALCOCO1Q9P1Z2 691 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 EFCAB6Q5THR3 1501 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 CFAP65Q6ZU64 1925 aaKnown RBP13.93□□□□□ -0.18
HDAC4-210ENST00000493582 RASEFQ8IZ41 740 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 SALL3Q9BXA9 1300 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 MTMR6Q9Y217 621 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 SLC4A2P04920 1241 aa13.92□□□□□ -0.18
HDAC4-210ENST00000493582 GJB2P29033 226 aa13.92□□□□□ -0.18
HDAC4-210ENST00000493582 CCDC83Q8IWF9 413 aa13.92□□□□□ -0.18
HDAC4-210ENST00000493582 NUP62CLQ9H1M0 184 aa13.92□□□□□ -0.18
HDAC4-210ENST00000493582 LIMCH1Q9UPQ0 1083 aa13.92□□□□□ -0.18
HDAC4-210ENST00000493582 TULP2O00295 520 aa13.92□□□□□ -0.18
HDAC4-210ENST00000493582 TRIM34Q9BYJ4 488 aa13.92□□□□□ -0.18
HDAC4-210ENST00000493582 CLIP2Q9UDT6 1046 aa13.92□□□□□ -0.18
HDAC4-210ENST00000493582 SNX14Q9Y5W7 946 aa13.92□□□□□ -0.18
HDAC4-210ENST00000493582 ADGRB3O60242 1522 aa13.92□□□□□ -0.18
HDAC4-210ENST00000493582 PPLO60437 1756 aa13.92□□□□□ -0.18
HDAC4-210ENST00000493582 HDGFL2Q7Z4V5 671 aaPredicted RBP13.91□□□□□ -0.18
HDAC4-210ENST00000493582 FERMT3Q86UX7 667 aa13.91□□□□□ -0.18
HDAC4-210ENST00000493582 PLA2G4DQ86XP0 818 aa13.91□□□□□ -0.18
HDAC4-210ENST00000493582 TTC14Q96N46 770 aa13.91□□□□□ -0.18
HDAC4-210ENST00000493582 FAM53CQ9NYF3 392 aa13.91□□□□□ -0.18
HDAC4-210ENST00000493582 TTC6Q86TZ1 520 aa13.91□□□□□ -0.18
HDAC4-210ENST00000493582 ZNF446Q9NWS9 450 aa13.91□□□□□ -0.18
HDAC4-210ENST00000493582 TRMT1Q9NXH9 659 aaKnown RBP13.91□□□□□ -0.18
HDAC4-210ENST00000493582 HNRNPH2P55795 449 aaKnown RBP13.91□□□□□ -0.18
HDAC4-210ENST00000493582 RIMS2Q9UQ26 1411 aa13.91□□□□□ -0.18
HDAC4-210ENST00000493582 IL13P35225 146 aa13.9□□□□□ -0.18
HDAC4-210ENST00000493582 IL17RAQ96F46 866 aa13.9□□□□□ -0.18
HDAC4-210ENST00000493582 TNMDQ9H2S6 317 aa13.9□□□□□ -0.18
HDAC4-210ENST00000493582 DACT1Q9NYF0 836 aa13.9□□□□□ -0.18
HDAC4-210ENST00000493582 PNMA6EA0A0J9YXQ4 647 aa13.9□□□□□ -0.18
HDAC4-210ENST00000493582 PTPN14Q15678 1187 aa13.9□□□□□ -0.18
HDAC4-210ENST00000493582 G2E3Q7L622 706 aa13.9□□□□□ -0.18
HDAC4-210ENST00000493582 CERS3Q8IU89 383 aa13.9□□□□□ -0.18
HDAC4-210ENST00000493582 GTF3C6Q969F1 213 aa13.9□□□□□ -0.18
HDAC4-210ENST00000493582 LMOD3Q0VAK6 560 aa13.89□□□□□ -0.19
HDAC4-210ENST00000493582 NOL10Q9BSC4 688 aaKnown RBP13.89□□□□□ -0.19
HDAC4-210ENST00000493582 IL1RAPL2Q9NP60 686 aa13.89□□□□□ -0.19
HDAC4-210ENST00000493582 CD163L1Q9NR16 1453 aa13.89□□□□□ -0.19
HDAC4-210ENST00000493582 GLI2P10070 1586 aa13.89□□□□□ -0.19
HDAC4-210ENST00000493582 SLC20A2Q08357 652 aa13.89□□□□□ -0.19
HDAC4-210ENST00000493582 KIAA0232Q92628 1395 aa13.89□□□□□ -0.19
HDAC4-210ENST00000493582 RAD50Q92878 1312 aa13.89□□□□□ -0.19
HDAC4-210ENST00000493582 DDX54Q8TDD1 881 aaKnown RBP13.89□□□□□ -0.19
HDAC4-210ENST00000493582 PRAM1Q96QH2 718 aa13.89□□□□□ -0.19
HDAC4-210ENST00000493582 DNAJC25Q9H1X3 360 aa13.89□□□□□ -0.19
HDAC4-210ENST00000493582 SSH2Q76I76 1423 aa13.88□□□□□ -0.19
HDAC4-210ENST00000493582 ZNF165P49910 485 aa13.88□□□□□ -0.19
HDAC4-210ENST00000493582 MCM10Q7L590 875 aa13.88□□□□□ -0.19
HDAC4-210ENST00000493582 LRRC8AQ8IWT6 810 aa13.88□□□□□ -0.19
HDAC4-210ENST00000493582 MIS18AQ9NYP9 233 aa13.88□□□□□ -0.19
HDAC4-210ENST00000493582 CASTP20810 708 aaKnown RBP13.88□□□□□ -0.19
HDAC4-210ENST00000493582 GGT6Q6P531 493 aa13.88□□□□□ -0.19
HDAC4-210ENST00000493582 NUTM1Q86Y26 1132 aa13.88□□□□□ -0.19
HDAC4-210ENST00000493582 ARAP3Q8WWN8 1544 aa13.88□□□□□ -0.19
HDAC4-210ENST00000493582 GNAI2P04899 355 aa13.87□□□□□ -0.19
HDAC4-210ENST00000493582 CYP2C19P33261 490 aa13.87□□□□□ -0.19
HDAC4-210ENST00000493582 KIF1BPQ96EK5 621 aa13.87□□□□□ -0.19
HDAC4-210ENST00000493582 TFIP11Q9UBB9 837 aaKnown RBP13.87□□□□□ -0.19
HDAC4-210ENST00000493582 SPG7Q9UQ90 795 aa13.87□□□□□ -0.19
HDAC4-210ENST00000493582 PTPRCP08575 1304 aa13.87□□□□□ -0.19
HDAC4-210ENST00000493582 VGFO15240 615 aaPredicted RBP13.87□□□□□ -0.19
HDAC4-210ENST00000493582 NECAB1Q8N987 351 aa13.87□□□□□ -0.19
HDAC4-210ENST00000493582 ERO1AQ96HE7 468 aa13.87□□□□□ -0.19
HDAC4-210ENST00000493582 CAMSAP1Q5T5Y3 1602 aa13.87□□□□□ -0.19
HDAC4-210ENST00000493582 FANCAO15360 1455 aa13.87□□□□□ -0.19
HDAC4-210ENST00000493582 ARHGEF28Q8N1W1 1705 aaKnown RBP13.87□□□□□ -0.19
HDAC4-210ENST00000493582 SKILP12757 684 aa13.87□□□□□ -0.19
HDAC4-210ENST00000493582 SYTL4Q96C24 671 aaPredicted RBP13.87□□□□□ -0.19
HDAC4-210ENST00000493582 HYPKQ9NX55 129 aa13.87□□□□□ -0.19
HDAC4-210ENST00000493582 ERBB3P21860 1342 aa13.86□□□□□ -0.19
HDAC4-210ENST00000493582 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.86□□□□□ -0.19
HDAC4-210ENST00000493582 ERCC6LQ2NKX8 1250 aa13.86□□□□□ -0.19
HDAC4-210ENST00000493582 NYAP1Q6ZVC0 841 aa13.86□□□□□ -0.19
HDAC4-210ENST00000493582 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.86□□□□□ -0.19
HDAC4-210ENST00000493582 CDK19Q9BWU1 502 aa13.86□□□□□ -0.19
HDAC4-210ENST00000493582 ZRANB1Q9UGI0 708 aa13.86□□□□□ -0.19
HDAC4-210ENST00000493582 ZFYVE9O95405 1425 aa13.86□□□□□ -0.19
HDAC4-210ENST00000493582 GOLGA6L4A6NEF3 574 aa13.86□□□□□ -0.19
HDAC4-210ENST00000493582 KLHL34Q8N239 644 aa13.86□□□□□ -0.19
HDAC4-210ENST00000493582 TDRD7Q8NHU6 1098 aaKnown RBP13.86□□□□□ -0.19
HDAC4-210ENST00000493582 RPGRIP1LQ68CZ1 1315 aa13.86□□□□□ -0.19
HDAC4-210ENST00000493582 KRT85P78386 507 aa13.85□□□□□ -0.19
HDAC4-210ENST00000493582 RRS1Q15050 365 aaKnown RBP13.85□□□□□ -0.19
HDAC4-210ENST00000493582 FILIP1Q7Z7B0 1213 aa13.85□□□□□ -0.19
HDAC4-210ENST00000493582 STAP2Q9UGK3 403 aa13.85□□□□□ -0.19
HDAC4-210ENST00000493582 UHRF1BP1LA0JNW5 1464 aa13.85□□□□□ -0.19
HDAC4-210ENST00000493582 SGSM2O43147 1006 aa13.85□□□□□ -0.19
HDAC4-210ENST00000493582 SLU7O95391 586 aaKnown RBP13.85□□□□□ -0.19
HDAC4-210ENST00000493582 LARP1BQ659C4 914 aaKnown RBP13.85□□□□□ -0.19
HDAC4-210ENST00000493582 FEZ2Q9UHY8 353 aaPredicted RBP13.85□□□□□ -0.19
HDAC4-210ENST00000493582 USP16Q9Y5T5 823 aa13.85□□□□□ -0.19
HDAC4-210ENST00000493582 ADCK5Q3MIX3 580 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms