RNA–Protein interactions for RNA: ENST00000490484.7

RBM39-236, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 871 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-236	ENST00000490484	ZPR1	O75312	459 aa		13.79	□□□□□ -0.2
RBM39-236	ENST00000490484	DDR1	Q08345	913 aa		13.79	□□□□□ -0.2
RBM39-236	ENST00000490484	USPL1	Q5W0Q7	1092 aa		13.79	□□□□□ -0.2
RBM39-236	ENST00000490484	RTF1	Q92541	710 aa	Known RBP	13.79	□□□□□ -0.2
RBM39-236	ENST00000490484	SCN7A	Q01118	1682 aa		13.79	□□□□□ -0.2
RBM39-236	ENST00000490484	STARD3NL	O95772	234 aa		13.78	□□□□□ -0.2
RBM39-236	ENST00000490484	CANX	P27824	592 aa	Known RBP	13.78	□□□□□ -0.2
RBM39-236	ENST00000490484	DDX10	Q13206	875 aa	Known RBP	13.78	□□□□□ -0.2
RBM39-236	ENST00000490484	DCTN1	Q14203	1278 aa		13.78	□□□□□ -0.2
RBM39-236	ENST00000490484	FMNL2	Q96PY5	1086 aa		13.78	□□□□□ -0.2
RBM39-236	ENST00000490484	KCNQ3	O43525	872 aa		13.77	□□□□□ -0.21
RBM39-236	ENST00000490484	NEFM	P07197	916 aa		13.77	□□□□□ -0.21
RBM39-236	ENST00000490484	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.77	□□□□□ -0.21
RBM39-236	ENST00000490484	DLG5	Q8TDM6	1919 aa		13.76	□□□□□ -0.21
RBM39-236	ENST00000490484	BRCA1	P38398	1863 aa	Known RBP	13.76	□□□□□ -0.21
RBM39-236	ENST00000490484		A0A0G2JLW4	131 aa		13.76	□□□□□ -0.21
RBM39-236	ENST00000490484	NARF	Q9UHQ1	456 aa		13.76	□□□□□ -0.21
RBM39-236	ENST00000490484	POLRMT	O00411	1230 aa	Known RBP	13.75	□□□□□ -0.21
RBM39-236	ENST00000490484	DPEP1	P16444	411 aa		13.75	□□□□□ -0.21
RBM39-236	ENST00000490484	TGFB2	P61812	414 aa		13.75	□□□□□ -0.21
RBM39-236	ENST00000490484	RALBP1	Q15311	655 aa		13.75	□□□□□ -0.21
RBM39-236	ENST00000490484	AFDN	P55196	1824 aa	Known RBP	13.74	□□□□□ -0.21
RBM39-236	ENST00000490484	MAPK8IP3	Q9UPT6	1336 aa		13.74	□□□□□ -0.21
RBM39-236	ENST00000490484	EIF5	P55010	431 aa	Known RBP	13.74	□□□□□ -0.21
RBM39-236	ENST00000490484	NFIX	Q14938	502 aa		13.74	□□□□□ -0.21
RBM39-236	ENST00000490484	PLEKHF1	Q96S99	279 aa		13.74	□□□□□ -0.21
RBM39-236	ENST00000490484	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.74	□□□□□ -0.21
RBM39-236	ENST00000490484	BCL2L12	Q9HB09	334 aa		13.74	□□□□□ -0.21
RBM39-236	ENST00000490484	BCS1L	Q9Y276	419 aa		13.74	□□□□□ -0.21
RBM39-236	ENST00000490484	ATP10D	Q9P241	1426 aa		13.73	□□□□□ -0.21
RBM39-236	ENST00000490484	NRXN2	Q9P2S2	1712 aa		13.73	□□□□□ -0.21
RBM39-236	ENST00000490484	PRAMEF22	A3QJZ6	481 aa		13.73	□□□□□ -0.21
RBM39-236	ENST00000490484	HTATSF1	O43719	755 aa	Known RBP	13.73	□□□□□ -0.21
RBM39-236	ENST00000490484	TM4SF1	P30408	202 aa		13.73	□□□□□ -0.21
RBM39-236	ENST00000490484	LAMB4	A4D0S4	1761 aa		13.73	□□□□□ -0.21
RBM39-236	ENST00000490484	BCOR	Q6W2J9	1755 aa		13.73	□□□□□ -0.21
RBM39-236	ENST00000490484	KDM3B	Q7LBC6	1761 aa		13.73	□□□□□ -0.21
RBM39-236	ENST00000490484	ADCY9	O60503	1353 aa		13.72	□□□□□ -0.21
RBM39-236	ENST00000490484	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.72	□□□□□ -0.21
RBM39-236	ENST00000490484		A0A087WZG4	1122 aa		13.72	□□□□□ -0.21
RBM39-236	ENST00000490484	A1BG	P04217	495 aa		13.72	□□□□□ -0.21
RBM39-236	ENST00000490484	IL6ST	P40189	918 aa	Predicted RBP	13.72	□□□□□ -0.21
RBM39-236	ENST00000490484	PIP4K2A	P48426	406 aa	Predicted RBP	13.72	□□□□□ -0.21
RBM39-236	ENST00000490484	BICDL1	Q6ZP65	573 aa		13.72	□□□□□ -0.21
RBM39-236	ENST00000490484	CHRNA5	P30532	468 aa		13.71	□□□□□ -0.21
RBM39-236	ENST00000490484	NFE2L2	Q16236	605 aa		13.71	□□□□□ -0.21
RBM39-236	ENST00000490484	NPM2	Q86SE8	214 aa	Known RBP	13.71	□□□□□ -0.21
RBM39-236	ENST00000490484	THUMPD2	Q9BTF0	503 aa	Known RBP	13.71	□□□□□ -0.21
RBM39-236	ENST00000490484	MIS18A	Q9NYP9	233 aa		13.71	□□□□□ -0.21
RBM39-236	ENST00000490484	TBC1D2B	Q9UPU7	963 aa		13.71	□□□□□ -0.21
RBM39-236	ENST00000490484	CARMIL3	Q8ND23	1372 aa		13.71	□□□□□ -0.22
RBM39-236	ENST00000490484	ARFGEF1	Q9Y6D6	1849 aa		13.7	□□□□□ -0.22
RBM39-236	ENST00000490484	SNRPA1	P09661	255 aa	Known RBP	13.7	□□□□□ -0.22
RBM39-236	ENST00000490484	KCNA3	P22001	575 aa		13.7	□□□□□ -0.22
RBM39-236	ENST00000490484	PNN	Q9H307	717 aa	Known RBP	13.7	□□□□□ -0.22
RBM39-236	ENST00000490484	USP16	Q9Y5T5	823 aa		13.7	□□□□□ -0.22
RBM39-236	ENST00000490484	DLEC1	Q9Y238	1755 aa		13.69	□□□□□ -0.22
RBM39-236	ENST00000490484	GIGYF1	O75420	1035 aa	Predicted RBP	13.69	□□□□□ -0.22
RBM39-236	ENST00000490484	SERPINB2	P05120	415 aa		13.69	□□□□□ -0.22
RBM39-236	ENST00000490484	TAF7	Q15545	349 aa	Predicted RBP	13.69	□□□□□ -0.22
RBM39-236	ENST00000490484	TBC1D9B	Q66K14	1250 aa		13.69	□□□□□ -0.22
RBM39-236	ENST00000490484	ZNF526	Q8TF50	670 aa	Predicted RBP	13.69	□□□□□ -0.22
RBM39-236	ENST00000490484	DALRD3	Q5D0E6	543 aa	Known RBP	13.68	□□□□□ -0.22
RBM39-236	ENST00000490484	DZIP3	Q86Y13	1208 aa	Known RBP	13.68	□□□□□ -0.22
RBM39-236	ENST00000490484	PIM2	Q9P1W9	311 aa		13.68	□□□□□ -0.22
RBM39-236	ENST00000490484	CAMTA2	O94983	1202 aa		13.67	□□□□□ -0.22
RBM39-236	ENST00000490484	ARHGAP27	Q6ZUM4	889 aa		13.67	□□□□□ -0.22
RBM39-236	ENST00000490484	PNISR	Q8TF01	805 aa	Known RBP	13.67	□□□□□ -0.22
RBM39-236	ENST00000490484	COL11A2	P13942	1736 aa	Predicted RBP	13.67	□□□□□ -0.22
RBM39-236	ENST00000490484	ANKRD31	Q8N7Z5	1873 aa		13.66	□□□□□ -0.22
RBM39-236	ENST00000490484	CCDC146	Q8IYE0	955 aa		13.66	□□□□□ -0.22
RBM39-236	ENST00000490484	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.66	□□□□□ -0.22
RBM39-236	ENST00000490484	NBPF26	B4DH59	902 aa		13.65	□□□□□ -0.22
RBM39-236	ENST00000490484	RIPK4	P57078	832 aa		13.65	□□□□□ -0.22
RBM39-236	ENST00000490484	WDR43	Q15061	677 aa	Known RBP eCLIP	13.65	□□□□□ -0.22	3e-7	■■□□□ 11.8
RBM39-236	ENST00000490484	NBPF10	Q6P3W6	841 aa	Known RBP	13.65	□□□□□ -0.22
RBM39-236	ENST00000490484	CCDC24	Q8N4L8	307 aa		13.65	□□□□□ -0.22
RBM39-236	ENST00000490484	NBPF15	Q8N660	670 aa		13.65	□□□□□ -0.22
RBM39-236	ENST00000490484	NPHP1	O15259	732 aa		13.64	□□□□□ -0.23
RBM39-236	ENST00000490484	C1QTNF8	P60827	252 aa		13.64	□□□□□ -0.23
RBM39-236	ENST00000490484	EIF4A1	P60842	406 aa	Known RBP	13.64	□□□□□ -0.23
RBM39-236	ENST00000490484	PRR5L	Q6MZQ0	368 aa		13.64	□□□□□ -0.23
RBM39-236	ENST00000490484	C2CD5	Q86YS7	1000 aa		13.64	□□□□□ -0.23
RBM39-236	ENST00000490484	CNBD1	Q8NA66	436 aa		13.64	□□□□□ -0.23
RBM39-236	ENST00000490484	SETDB2	Q96T68	719 aa		13.64	□□□□□ -0.23
RBM39-236	ENST00000490484	RRP7A	Q9Y3A4	280 aa	Known RBP	13.64	□□□□□ -0.23
RBM39-236	ENST00000490484	TMPO	P42166	694 aa	Known RBP	13.63	□□□□□ -0.23
RBM39-236	ENST00000490484	LMOD3	Q0VAK6	560 aa		13.63	□□□□□ -0.23
RBM39-236	ENST00000490484	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.63	□□□□□ -0.23
RBM39-236	ENST00000490484	TSPYL4	Q9UJ04	414 aa		13.63	□□□□□ -0.23
RBM39-236	ENST00000490484	ZNF652	Q9Y2D9	606 aa		13.63	□□□□□ -0.23
RBM39-236	ENST00000490484		H0YIN7	160 aa		13.62	□□□□□ -0.23
RBM39-236	ENST00000490484	NEUROD2	Q15784	382 aa		13.62	□□□□□ -0.23
RBM39-236	ENST00000490484	ST5	P78524	1137 aa		13.61	□□□□□ -0.23
RBM39-236	ENST00000490484	NGEF	Q8N5V2	710 aa		13.61	□□□□□ -0.23
RBM39-236	ENST00000490484	SENP3-EIF4A1	A0A087X0R7	540 aa		13.6	□□□□□ -0.23
RBM39-236	ENST00000490484	PDE6B	P35913	854 aa		13.6	□□□□□ -0.23
RBM39-236	ENST00000490484	RASSF7	Q02833	373 aa		13.6	□□□□□ -0.23
RBM39-236	ENST00000490484	CACNA1S	Q13698	1873 aa		13.6	□□□□□ -0.23
RBM39-236	ENST00000490484	C9orf131	Q5VYM1	1079 aa		13.6	□□□□□ -0.23

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